POLICY PLATFORM The case for paracoccidioidomycosis to be accepted as a neglected tropical (fungal) disease 1 2 1,3,4 Joshua Griffiths , Arnaldo Lopes Colombo , David W. Denning * ID 1 The University of Manchester, Manchester, United Kingdom, 2 Division of Infectious Diseases, Universidade Federal de São Paulo, São Paulo, Brazil, 3 National Aspergillosis Centre, Wythenshawe Hospital, Manchester Academic Health Science Centre, Manchester, United Kingdom, 4 Global Action Fund for Fungal Infections, Geneva, Switzerland * email@example.com, ddenning@GAFFI.org Introduction The World Health Organization’s (WHO) neglected tropical disease (NTD) portfolio is a diverse group of diseases with profound impacts on affected populations. The diseases are rec- ognised as being both a symptom of poverty and a powerful contributor to the ‘poverty trap’— a complex and self-perpetuating phenomenon of the interrelated burdens of disease, conflict, a1111111111 poverty, and low educational attainment [1–3]. In 2017, chromoblastomycosis was accepted as a1111111111 an NTD, following the example of mycetoma, by the Strategic and Technical Advisory Group a1111111111 for NTDs (STAG-NTD) and WHO Executive Board with ‘other deep mycoses’ . a1111111111 Paracoccidioidomycosis (PCM) is a deep mycosis endemic to Latin America. Autochtho- a1111111111 nous cases are exclusive to the tropical and subtropical zone from Mexico (23˚ north) to Argentina (35˚ south) (Fig 1), and it is more common in areas with a high rainfall and subject to flooding . It is caused by members of the Paracoccidioides genus, a dimorphic fungi found in soil that includes two different species: Paracoccidioides brasiliensis and P. lutzii. It OPENACCESS predominantly affects males  from rural communities, or those who have had prolonged Citation: Griffiths J, Lopes Colombo A, Denning contact with a rural environment, aged between 30 and 60 years old [7–9]. DW (2019) The case for paracoccidioidomycosis The impact of this fungus in South America is widespread and devastating. Although to be accepted as a neglected tropical (fungal) already recognised by PLOS Neglected Tropical Diseases as a major NTD, we argue here that disease. PLoS Negl Trop Dis 13(5): e0007195. WHO and the Pan-American Health Organization (PAHO) should explicitly recognise PCM https://doi.org/10.1371/journal.pntd.0007195 as an NTD. Editor: Thuy Le, Yale University School of Medicine, UNITED STATES Public health impact and association with poverty Published: May 16, 2019 Previous reviews of the epidemiology of PCM have attempted to estimate the incidence of the Copyright:© 2019 Griffiths et al. This is an open disease using case series [5,10]. Large series published from geographic areas with stable access article distributed under the terms of the endemicity suggest incidence rates of 1–4 cases/100,000 inhabitants per year in Brazil and Creative Commons Attribution License, which permits unrestricted use, distribution, and Colombia [8,11,12]. In hyperendemic areas from Brazil, annual incidence rates may be as high reproduction in any medium, provided the original as 9–40 cases/100,000 inhabitants [10,13]. PCM caused 1,853 deaths in Brazil from 1996 to author and source are credited. 2006 . In two recent large epidemiological studies, the mortality of PCM was between 6.1% Funding: The authors received no specific funding  and 7.6% . for this work. Several of the predisposing factors for PCM may be related to poverty. First, as the conidia- producing form of Paracoccidioides spp. resides in soil and host-to-host transmission does not Competing interests: The authors have declared that no competing interests exist. occur, PCM predominately affects those who have had prolonged contact with soil in endemic PLOS Neglected Tropical Diseases | https://doi.org/10.1371/journal.pntd.0007195 May 16, 2019 1 / 10 Fig 1. Distribution of paracoccidioidomycosis in South America. Image credit: with permission from Leading International Fungal Education (www.LIFE-worldwide.org). https://doi.org/10.1371/journal.pntd.0007195.g001 regions. This explains why the vast majority of cases are seen in patients who have lived or worked rurally—93.5% in a 1,000-case series published in 2011 . It has been described as an occupational disease of farmers . In addition to smoking, high alcohol intake predisposes to the progression of latent foci to active disease . Malnutrition is also thought to be a con- tributor to the development of the disease . Sequelae in different organs are frequently found as a result of late diagnosis of the fungal infection [15,17]. The sequelae of this disease during a sufferer’s economically most productive period can be significant. Combined with the potentially high cost of prolonged treatment, these factors contribute to this disease’s poverty-inducing potential. The sequelae of this dis- ease are often the result of chronic inflammatory processes, leading to the accumulation of col- lagen in fibrosis—which may profoundly impact organ function and cannot be treated by antifungal medication . Pulmonary involvement is common and may be confused with tuberculosis, leading to delayed diagnosis (Fig 2). PCM-associated pulmonary fibrosis is PLOS Neglected Tropical Diseases | https://doi.org/10.1371/journal.pntd.0007195 May 16, 2019 2 / 10 Fig 2. CT scan of pulmonary paracoccidioidomycosis with bilateral small nodules, ground glass changes, and a small cavity in the right upper lobe. CT, computed tomography. https://doi.org/10.1371/journal.pntd.0007195.g002 irreversible, and its restriction of patients’ activities of daily living can be profound . Lung fibrosis occurs in up to 53% of treated patients with pulmonary PCM . By using high-reso- lution computed tomography to evaluate 50 consecutive patients with PCM after successful treatment with antifungal drugs, residual radiological abnormalities were found in almost all PLOS Neglected Tropical Diseases | https://doi.org/10.1371/journal.pntd.0007195 May 16, 2019 3 / 10 patients, including architectural distortion (90%), reticulate and septal thickening (88%), cen- trilobular and paraseptal emphysema (84%), and parenchymal bands (74%) . Adrenal involvement is also very common in PCM. At autopsy, P. brasiliensis has been demonstrated by direct visualisation of adrenal tissue in up to 90% of patients. In total, 14%–48% of patients with PCM have asymptomatic adrenal dysfunction, demonstrated by limited cortisol response to adrenocorticotropic hormone (ACTH) stimulation, and 3%–7% of patients develop Addi- son disease [21,22]. Neuroparacoccidioidomycosis (Fig 3) can be particularly disabling, and the risk of sequelae in this form of the disease is high. It may produce motor deficits, epilepsy, or significantly raised intracranial pressure requiring ventral shunting . Dysphonia with vocal cord lesions , laryngeal obstruction necessitating tracheostomy, synechia of the but- tocks following perianal lesions, and the particularly disfiguring microstomia following facial lesions are among the other sequelae described . Unlike other systemic mycoses such as histoplasmosis and cryptococcosis, an increased incidence of PCM in HIV-infected individuals has not been demonstrated, despite the epide- miological overlap of the two diseases . The clinical course of the disease in patients coin- fected with PCM and HIV tends to be more severe. Additionally, patients usually present with pulmonary lesions (a feature of the chronic form, which otherwise is almost the exclusive form affecting those over 30 years old) as well as generalised lymphadenopathy, splenomegaly, bone lesions, and skin lesions as a result of haematogenous dissemination (a feature of the acute/ subacute form of the disease, which tends to affect children) . In a 2009 retrospective case control study, the mortality in HIV-positive PCM patients was 12.2% (directly attributable to PCM, 24.4% all-cause mortality) compared with 6% in HIV-negative PCM patients . The relapse rate is also usually higher in HIV-infected patients than that reported in normal hosts, and much longer treatment regimens are usually required. Control and Prevention: Ongoing research and development needs Diagnosis. The ‘gold standard’ for the diagnosis of PCM is direct visualisation of the fun- gal yeast cells surrounded by multiple budding daughter cells (the ‘pilot’s wheel’) or isolation of the fungal agent in culture of clinical samples or tissue (Fig 4) . The difficulties of dem- onstrating the fungus in clinical samples and the length of time that confirmation by culture requires means that serological tests have vital application in both the diagnosis of PCM and in monitoring treatment response (Table 1) . Double immunodiffusion (DID) is the serologi- cal test of choice for the diagnosis of PCM. There are some key current problems in the sero- logical diagnosis of PCM. The first is that the new insights into the complexity of the Paracoccidioides genus are shedding light on the wide variation in antigen production. For example, the antigenic 43-kDa glycoprotein gp-43 is the main antigen used in this test in the serological diagnosis of PCM, but some isolates in the Paracoccidioides spp. complex produce either very low levels of or no gp-43 antigens—particularly P. lutzii . gp-43 is therefore not recommended as a single-antigen preparation for diagnosis. Furthermore, preparation of the antigens for serological diagnosis is not standardised with variations in production, resulting in substantial variation in immunogenicity. Mixtures of unidentified antigens are often used, which may impair the tests’ sensitivity and specificity because of cross-reactivity with the sera from patients with other mycoses . These two factors combined help explain the large interlaboratory variations in diagnosis recently demonstrated. In 2014, Vidal and colleagues compared serological diagnosis between six major Brazilian reference centres. It was found that there was a high rate of major discor- dance (20%), which can affect clinical decision-making. Those centres using antigens from pooled isolates performed better . PLOS Neglected Tropical Diseases | https://doi.org/10.1371/journal.pntd.0007195 May 16, 2019 4 / 10 Fig 3. Centrally located neuroparacoccidioidomycosis in the posterior fossa measuring 2.4 × 1.8 cm. https://doi.org/10.1371/journal.pntd.0007195.g003 New PCM serum markers and a standardization of the diagnostic approach are required in order to effectively diagnose PCM and thereby manage it at a public health level. Past attempts at standardisation have foundered, as reference centres have used ‘in-house’ methodologies for many years, often with little feedback from clinicians, and there is little impetus for change . Using standardised, purified, cloned antigens may be a way forward, rather than standardising ‘in-house’ antigen production. Using purified antigens reduces the risk of cross-reactivity, thereby increasing specificity, and their use, particularly in combination, can lead to high levels of sensitiv- ity and specificity . Otherwise, ‘point-of-care’ tests would certainly be more suitable for pro- viding early diagnosis in endemic regions. PLOS Neglected Tropical Diseases | https://doi.org/10.1371/journal.pntd.0007195 May 16, 2019 5 / 10 Fig 4. Lung biopsy stained by methenamine silver (Gomori–Grocott) illustrating large yeast cells surrounded by multiple budding. Photomicrograph provided by Prof Rimarcs Gomes Ferreira, Department of Pathology-Escola Paulista de Medicina-UNIFESP. UNIFESP, Universidade Federal de São Paulo. https://doi.org/10.1371/journal.pntd.0007195.g004 Education at all levels of the healthcare system is also required, and a free online course on microscopy and histology has recently been launched by Leading Fungal Education Interna- tional in four languages (www.microfungi.net). Treatment There is a lack of a high-quality body of evidence guiding the treatment of PCM. It is respon- sive to many antifungal medications. In mild to moderate disease, a 200-mg dose of itracona- zole was recommended as the first-line choice in the 2017 Brazilian consensus guidelines . In severe PCM, the use of intravenous amphotericin B preparations, either as deoxycholate or in a lipid formulation, or alternatively intravenous cotrimoxazole was recommended, although there are very few data published . Only two randomised trials of treatment regimens for PCM have been conducted, one comparing itraconazole and voriconazole  and the other comparing itraconazole, ketoconazole, and sulfadiazine . Neither had the statistical power to demonstrate superiority of one treatment over the other. The most recent guidelines are based on numerous noncomparative studies and expert opinions and two studies comparing itraconazole and cotrimoxazole. The first dual-cohort, nonrandomised study compared itraconazole (200 mg once daily) and cotrimoxazole (1,440 mg every 12 hours) in 177 patients in the induction and mainte- nance phases of treatment. Although no difference was found in efficacy and effectiveness of reaching either clinical cure in the induction phase or serological cure in the maintenance phase, itraconozole induced cure more quickly in both phases (105 days versus 159 days to PLOS Neglected Tropical Diseases | https://doi.org/10.1371/journal.pntd.0007195 May 16, 2019 6 / 10 Table 1. Diagnostic methods for PCM and evaluation of value and drawbacks. Diagnostic methods Sensitivity Specificity Pros Cons Serology (DID, CIE, 69%–100% 80%– • Correlates with the severity of disease • No commercial kits available IIF) 100% • Monitor therapeutic response • No standardization, impairing reproducibility and • Inexpensive repetitiveness No validated serological techniques for P. lutzii • May be negative in immunosuppressive conditions • Cross-reaction with histoplasmosis and aspergillosis Specific antigen 100% 96% • Provides diagnosis in immunocompromised patients • Expensive when compared with conventional detection with negative production of specific antibodies methods gp43kDa and • Provides diagnosis in biological materials with low • Not available for routine diagnosis of PCM gp70kDa burden of infection by detecting specific fungal antigens (serum, BAL, CSF) Fresh examination/ 48%–75%, HIGH • Immediate results • Requires skilled professionals to read the exam direct microscopy worst in • Samples are easy to obtain Micromorphology of P. brasiliensis/P. lutzii sputum • Inexpensive pathogens are not distinguished Culture 25%–44% 100% • Provides material for further evaluation of species, • 2–6 weeks of incubation antifungal susceptibility, and virulence • Biohazard concerns Histopathology 65%–97% HIGH • May help to define the severity of disease (compact • Invasive procedure is required for biopsy granuloma versus loose granuloma) Small forms of Paracoccidioides spp. might be • Requires skilled professionals confounded with Histoplasma capsulatum or Cryptococcus neoformans Molecular methods HIGH HIGH • Provides species identification • Expensive when compared with conventional (PCR) • Provides diagnosis in biological materials with low methods burden of infection • Not available for routine diagnosis of PCM Abbreviations: BAL, bronchoalveolar lavage; CIE, counterimmune electrophoresis; CSF, cerebrospinal fluid; DID, double immunodiffusion; gp43kDa, gp43kDa gene of P. brasiliensis; gp70kDa, gp70kDa gene of P. brasiliensis; IIF, indirect immunofluorescence test; PCM, paracoccidioidomycosis. https://doi.org/10.1371/journal.pntd.0007195.t001 clinical cure [p = 0.001], 161 days versus 495 days [p = 0.02]). It was also associated with fewer side effects (6.4% versus 20% [p = 0.03]) . Another comparative cohort study of 200 patients was performed comparing once-daily itraconazole and twice-daily cotrimoxazole . Itraconazole was significantly superior, and the time to cure was 11 months shorter with itraconazole (12 months versus 23 months). Adherence to treatment could be one factor responsible for better outcomes . Generic itraconazole is only 1.6 times more expensive than cotrimoxazole in Brazil when this shortened treatment regime is taken into account. Given a better side effect profile and probable superiority, it is recommended as a first-line therapy . However, sulfamethoxazole-trimetho- prim is currently distributed free of charge by the Brazilian Ministry of Health  and, as such, is much more commonly used. This anomaly should be modernised. There are other research areas requiring considerable development and funding that have the potential to benefit from a WHO NTD disease status. Prolonged treatment is currently required for the recovery of cell-mediated immunity. There has been some promising work on the development of a therapeutic vaccine that would induce immunity in experimental models and in vitro, which might eventually allow significantly shorter treatment regimes . There is also some evidence in the literature that PCM patients with severe inflammation may benefit from adjunctive therapy with corticosteroids . Epidemiology and prevention The 2017 Brazilian guidelines for the management of PCM called for the development of a national registry of cases and the institution of compulsory notification . Such a registry PLOS Neglected Tropical Diseases | https://doi.org/10.1371/journal.pntd.0007195 May 16, 2019 7 / 10 would be beneficial in many ways, giving a more accurate understanding of the size and spread of the problem and allowing more effective strategic healthcare provision planning and com- mensurate allocation of resources. Prevention of PCM is a challenge given the very high rates of infection and the apparent ease of exposure to the fungus in rural areas. Current recommendations advise avoiding expo- sure to soil dust in endemic areas if possible (particularly in children and the immunocompro- mised) and the use of N95 respirators or well-sealed cabins in agricultural machinery for rural workers otherwise unable to avoid exposure in hyperendemic areas. Health education programmes, particularly in hyperendemic areas, could tackle both exposure to the fungus and the usual delayed presentation of the chronic disease to medical attention. These pro- grammes could also be extended to urban centres receiving high volumes of migrants from these areas. No efforts to treat latent PCM, as for tuberculosis, are published. Much more work is needed to develop such effective public health interventions and assess their value. Conclusion PCM fulfils WHO NTD criteria and would benefit from such a classification. PCM is endemic to the tropical regions of Latin America. PCM is an important cause of mortality in Brazil [14,38]. PCM causes significant morbidity and predominately affects poor rural workers or people living in urban slums at their most economically productive stage of life and requires very long treatment regimes. Lung sequelae are frequent, reducing work productivity and quality of life of a large number of patients, and other complications can also be very disabling. 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