PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order

PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order Summary: PermutMatrix is a work space designed to graphically explore gene expression data. It relies on the graphical approach introduced by Eisen and also offers several methods for the optimal reorganization of rows and columns of a numerical dataset. For example, several methods are proposed for optimal reorganization of the leaves of a hierarchical clustering tree, along with several seriation or unidimensional scaling methods that do not require any preliminary hierarchical clustering. This program, developed for MS Windows, with MS-Visual C++, has a clear and efficient graphical interface. Large datasets can be thoroughly and quickly analyzed.Availability: http://www.lirmm.fr/~caraux/PermutMatrix/Contact: caraux@lirmm.fr http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Bioinformatics Oxford University Press

PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order

Bioinformatics, Volume 21 (7) – Apr 1, 2005

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Publisher
Oxford University Press
Copyright
© The Author 2004. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
ISSN
1367-4803
eISSN
1460-2059
D.O.I.
10.1093/bioinformatics/bti141
Publisher site
See Article on Publisher Site

Abstract

Summary: PermutMatrix is a work space designed to graphically explore gene expression data. It relies on the graphical approach introduced by Eisen and also offers several methods for the optimal reorganization of rows and columns of a numerical dataset. For example, several methods are proposed for optimal reorganization of the leaves of a hierarchical clustering tree, along with several seriation or unidimensional scaling methods that do not require any preliminary hierarchical clustering. This program, developed for MS Windows, with MS-Visual C++, has a clear and efficient graphical interface. Large datasets can be thoroughly and quickly analyzed.Availability: http://www.lirmm.fr/~caraux/PermutMatrix/Contact: caraux@lirmm.fr

Journal

BioinformaticsOxford University Press

Published: Apr 1, 2005

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