Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/oxford-university-press/bacterial-versatility-requires-dead-box-rna-helicases-jMqMxtb7lD
References (172)
-
Margaret Fairman-Williams, Ulf-Peter Guenther, E. Jankowsky (2010)
SF1 and SF2 helicases: family matters.Current opinion in structural biology, 20 3
-
Gwendoline Cartier, Florence Lorieux, F. Allemand, M. Dreyfus, T. Bizebard (2010)
Cold adaptation in DEAD-box proteins.Biochemistry, 49 12
-
S. Steinberg, Yury Boutorine (2007)
G-ribo motif favors the formation of pseudoknots in ribosomal RNA.RNA, 13 7
-
Bettina Theissen, Anne Karow, J. Köhler, A. Gubaev, D. Klostermeier (2008)
Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicaseProceedings of the National Academy of Sciences, 105
-
Christopher Tsu, Karl Kossen, O. Uhlenbeck (2001)
The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA.RNA, 7 5
-
(2011)
A conserved mechanism of DEAD-box ATPase activation by nucleoporins and IP6 in mRNA exportNature, 472
-
Christopher Vakulskas, Archana Pannuri, D. Cortés-Selva, T. Zere, B. Ahmer, P. Babitzke, T. Romeo (2014)
Global effects of the DEAD‐box RNA helicase DeaD (CsdA) on gene expression over a broad range of temperaturesMolecular Microbiology, 92
-
G. Butland, N. Krogan, Jianhua Xu, Wenhong Yang, H. Aoki, Joyce Li, N. Krogan, J. Menéndez, G. Cagney, Gholam Kiani, Mathew Jessulat, Nira Datta, I. Ivanov, M. AbouHaidar, A. Emili, J. Greenblatt, M. Ganoza, A. Golshani (2007)
Investigating the in vivo activity of the DeaD protein using protein–protein interactions and the translational activity of structured chloramphenicol acetyltransferase mRNAsJournal of Cellular Biochemistry, 100
-
S. Laalami, L. Zig, H. Putzer (2013)
Initiation of mRNA decay in bacteriaCellular and Molecular Life Sciences, 71
-
Z. Pietras, S. Hardwick, S. Swiezewski, B. Luisi (2013)
Potential Regulatory Interactions of Escherichia coli RraA Protein with DEAD-box HelicasesThe Journal of Biological Chemistry, 288
-
Andrea Putnam, E. Jankowsky (2013)
DEAD-box helicases as integrators of RNA, nucleotide and protein binding.Biochimica et biophysica acta, 1829 8
-
Caroline Giraud, S. Hausmann, S. Lemeille, J. Prados, Peter Redder, P. Linder (2015)
The C-terminal region of the RNA helicase CshA is required for the interaction with the degradosome and turnover of bulk RNA in the opportunistic pathogen Staphylococcus aureusRNA Biology, 12
-
N. Mathy, L. Bénard, O. Pellegrini, R. Daou, Tingyi Wen, C. Condon (2007)
5′-to-3′ Exoribonuclease Activity in Bacteria: Role of RNase J1 in rRNA Maturation and 5′ Stability of mRNACell, 129
-
P. Linder, E. Jankowsky (2011)
From unwinding to clamping — the DEAD box RNA helicase familyNature Reviews Molecular Cell Biology, 12
-
Linda Hicks, I. Warrier, Rahul Raghavan, M. Minnick (2011)
Ribozyme Stability, Exon Skipping, and a Potential Role for RNA Helicase in Group I Intron Splicing by Coxiella burnetiiJournal of Bacteriology, 193
-
Anna Mallam, Inga Jarmoskaite, Pilar Tijerina, M. Campo, S. Seifert, Liang Guo, R. Russell, A. Lambowitz (2011)
Solution structures of DEAD-box RNA chaperones reveal conformational changes and nucleic acid tethering by a basic tailProceedings of the National Academy of Sciences, 108
-
N. Roschanski, S. Klages, R. Reinhardt, M. Linscheid, E. Strauch (2011)
Identification of Genes Essential for Prey-Independent Growth of Bdellovibrio bacteriovorus HD100Journal of Bacteriology, 193
-
D. Herschlag (1995)
RNA Chaperones and the RNA Folding Problem (*)The Journal of Biological Chemistry, 270
-
Quansheng Yang, M. Campo, A. Lambowitz, E. Jankowsky (2007)
DEAD-box proteins unwind duplexes by local strand separation.Molecular cell, 28 2
-
B. Schwer, C. Guthrie (1991)
PRP16 is an RNA-dependent ATPase that interacts transiently with the spliceosomeNature, 349
-
Ivica Letunic, P. Bork (2007)
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotationBioinformatics, 23 1
-
S. Vries, P. Burghout, J. Langereis, Aldert Zomer, P. Hermans, H. Bootsma (2013)
Genetic requirements for Moraxella catarrhalis growth under iron‐limiting conditionsMolecular Microbiology, 87
-
G. Coburn, Xin Miao, D. Briant, G. Mackie (1999)
Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase.Genes & development, 13 19
-
R. Mazzon, Elza Lang, V. Braz, M. Marques (2008)
Characterization of Caulobacter crescentus response to low temperature and identification of genes involved in freezing resistance.FEMS microbiology letters, 288 2
-
Yulia Redko, S. Aubert, A. Stachowicz, P. Lenormand, A. Namane, F. Darfeuille, Marie Thibonnier, H. Reuse (2012)
A minimal bacterial RNase J-based degradosome is associated with translating ribosomesNucleic Acids Research, 41
-
Dmitrii Trubetskoy, F. Proux, F. Allemand, M. Dreyfus, I. Iost (2009)
SrmB, a DEAD-box helicase involved in Escherichia coli ribosome assembly, is specifically targeted to 23S rRNA in vivoNucleic Acids Research, 37
-
Melissa Erce, Jason Low, P. March, M. Wilkins, K. Takayama (2009)
Identification and functional analysis of RNase E of Vibrio angustum S14 and two-hybrid analysis of its interaction partners.Biochimica et biophysica acta, 1794 8
-
R. Iggo, S. Picksley, J. Southgate, J. McPheat, D. Lane (1990)
Identification of a putative RNA helicase in E.coli.Nucleic acids research, 18 18
-
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
Nucleic Acids Res, 35
-
J. Hardin, Yaoxiong Hu, D. Mckay (2010)
Structure of the RNA binding domain of a DEAD-box helicase bound to its ribosomal RNA target reveals a novel mode of recognition by an RNA recognition motif.Journal of molecular biology, 402 2
-
M. Campo, S. Mohr, Yue Jiang, Huijue Jia, E. Jankowsky, A. Lambowitz (2009)
Unwinding by local strand separation is critical for the function of DEAD-box proteins as RNA chaperones.Journal of molecular biology, 389 4
-
Xue-hong Qiu, Xun Yan, Mingxing Liu, R. Han (2012)
Genetic and Proteomic Characterization of rpoB Mutations and Their Effect on Nematicidal Activity in Photorhabdus luminescens LN2PLoS ONE, 7
-
Rajyaguru Purusharth, Franziska Klein, S. Sulthana, S. Jäger, M. Jagannadham, E. Evguenieva-Hackenberg, M. Ray, G. Klug (2005)
Exoribonuclease R Interacts with Endoribonuclease E and an RNA Helicase in the Psychrotrophic Bacterium Pseudomonas syringae Lz4W*Journal of Biological Chemistry, 280
-
A. Prud’homme-Généreux, R. Beran, I. Iost, C. Ramey, G. Mackie, R. Simons (2004)
Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold‐shock protein, CsdA: evidence for a ‘cold shock degradosome’Molecular Microbiology, 54
-
Lisa Elles, Michael Sykes, J. Williamson, O. Uhlenbeck (2009)
A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunitNucleic Acids Research, 37
-
Aydan Salman-Dilgimen, Pierre-Olivier Hardy, Ashley Dresser, G. Chaconas (2011)
HrpA, a DEAH-Box RNA Helicase, Is Involved in Global Gene Regulation in the Lyme Disease SpirochetePLoS ONE, 6
-
K. Pruitt, T. Tatusova, D. Maglott (2004)
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteinsNucleic Acids Research, 33
-
S. Kujat, G. Owttrim (2000)
Redox-regulated RNA helicase expression.Plant physiology, 124 2
-
S. Roos, S. Lindgren, H. Jonsson (1999)
Autoaggregation of Lactobacillus reuteri is mediated by a putative DEAD‐box helicaseMolecular Microbiology, 32
-
P. Bryan, R. Steffan, A. DePaola, J. Foster, A. Bej (1999)
Adaptive Response to Cold Temperatures in Vibrio vulnificusCurrent Microbiology, 38
-
F. Fuller-Pace, S. Nicol, A. Reid, D. Lane (1993)
DbpA: a DEAD box protein specifically activated by 23s rRNA.The EMBO Journal, 12
-
N. Tanner, Olivier Cordin, J. Banroques, Monique Doère, P. Linder (2003)
The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis.Molecular cell, 11 1
-
D. Kressler, P. Linder, J. Cruz (1999)
Protein trans-Acting Factors Involved in Ribosome Biogenesis in Saccharomyces cerevisiaeMolecular and Cellular Biology, 19
-
J. Worrall, M. Górna, N. Crump, Lara Phillips, A. Tuck, A. Price, Vassiliy Bavro, B. Luisi (2008)
Reconstitution and analysis of the multienzyme Escherichia coli RNA degradosome.Journal of molecular biology, 382 4
-
Melissa Erce, Jason Low, M. Wilkins (2010)
Analysis of the RNA degradosome complex in Vibrio angustum S14The FEBS Journal, 277
-
W. Loomis, Jovanka Koo, Teresa Cheung, S. Moseley (2001)
A tripeptide sequence within the nascent DaaP protein is required for mRNA processing of a fimbrial operon in Escherichia coliMolecular Microbiology, 39
-
S. Bilges, M. ApostolJ, A. AldapeM, L. MoseleyS (1993)
大腸菌の線毛接着分子F1845の発現におけるmRNAプロセシングは,RNアーゼIII,RNアーゼE非依存的におこる, 90
-
D. Chamot, Wendy Magee, E. Yu, G. Owttrim (1999)
A Cold Shock-Induced Cyanobacterial RNA HelicaseJournal of Bacteriology, 181
-
F. Proux, M. Dreyfus, I. Iost (2011)
Identification of the sites of action of SrmB, a DEAD‐box RNA helicase involved in Escherichia coli ribosome assemblyMolecular Microbiology, 82
-
Christopher Tsu, O. Uhlenbeck (1998)
Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA.Biochemistry, 37 48
-
D. Grimm, K. Tilly, Rebecca Byram, P. Stewart, Jonathan Krum, D. Bueschel, T. Schwan, P. Policastro, A. Elias, P. Rosa (2004)
Outer-surface protein C of the Lyme disease spirochete: a protein induced in ticks for infection of mammals.Proceedings of the National Academy of Sciences of the United States of America, 101 9
-
S. Spillmann, F. Dohme, K. Nierhaus (1977)
Assembly in vitro of the 50 S subunit from Escherichia coli ribosomes: proteins essential for the first heat-dependent conformational change.Journal of molecular biology, 115 3
-
W. Toone, Kenneth Rudd, D. James, '. Friesen (1991)
deaD, a new Escherichia coli gene encoding a presumed ATP-dependent RNA helicase, can suppress a mutation in rpsB, the gene encoding ribosomal protein S2Journal of Bacteriology, 173
-
I. Iost, T. Bizebard, M. Dreyfus (2013)
Functions of DEAD-box proteins in bacteria: current knowledge and pending questions.Biochimica et biophysica acta, 1829 8
-
T. Bizebard, I. Ferlenghi, I. Iost, M. Dreyfus (2004)
Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases.Biochemistry, 43 24
-
Peter Redder, P. Linder (2012)
New Range of Vectors with a Stringent 5-Fluoroorotic Acid-Based Counterselection System for Generating Mutants by Allelic Replacement in Staphylococcus aureusApplied and Environmental Microbiology, 78
-
Sakura Netterling, K. Vaitkevicius, Stefan Nord, J. Johansson (2012)
A Listeria monocytogenes RNA Helicase Essential for Growth and Ribosomal Maturation at Low Temperatures Uses Its C Terminus for Appropriate Interaction with the RibosomeJournal of Bacteriology, 194
-
J. Charollais, M. Dreyfus, I. Iost (2004)
CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit.Nucleic acids research, 32 9
-
Shuying Wang, Yaoxiong Hu, M. Overgaard, Fedor Karginov, O. Uhlenbeck, D. Mckay (2006)
The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold.RNA, 12 6
-
C. Médigue, E. Krin, G. Pascal, V. Barbe, Andreas Bernsel, P. Bertin, Frankie Cheung, S. Cruveiller, S. D'amico, A. Duilio, Gang Fang, G. Feller, Christine Ho, S. Mangenot, G. Marino, J. Nilsson, E. Parrilli, E. Rocha, Zoé Rouy, A. Sękowska, M. Tutino, D. Vallenet, G. Heijne, A. Danchin (2005)
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.Genome research, 15 10
-
Yingfeng Chen, J. Potratz, Pilar Tijerina, M. Campo, A. Lambowitz, R. Russell (2008)
DEAD-box proteins can completely separate an RNA duplex using a single ATPProceedings of the National Academy of Sciences, 105
-
W. Widner, R. Wickner (1993)
Evidence that the SKI antiviral system of Saccharomyces cerevisiae acts by blocking expression of viral mRNAMolecular and Cellular Biology, 13
-
Y. Nagata, Junko Senbongi, Y. Ishibashi, Rie Sudo, M. Miyakoshi, Y. Ohtsubo, M. Tsuda (2014)
Identification of Burkholderia multivorans ATCC 17616 genetic determinants for fitness in soil by using signature-tagged mutagenesis.Microbiology, 160 Pt 5
-
J. Worrall, Françoise Howe, A. McKay, C. Robinson, B. Luisi (2007)
Allosteric Activation of the ATPase Activity of the Escherichia coli RhlB RNA Helicase*The Journal of biological chemistry, 283
-
Pamela Jones, Masanori Mitta, Young Kim, Weining Jiang, Masayori Inouye (1996)
Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli.Proceedings of the National Academy of Sciences of the United States of America, 93 1
-
Xin-liang Zhao, C. Jain (2011)
DEAD-Box Proteins from Escherichia coli Exhibit Multiple ATP-Independent ActivitiesJournal of Bacteriology, 193
-
A. Henry, J. Shanks, A. Hoof, Jason Rosenzweig (2012)
The Yersinia pseudotuberculosis degradosome is required for oxidative stress, while its PNPase subunit plays a degradosome-independent role in cold growth.FEMS microbiology letters, 336 2
-
胡素丽, 王立婷, 丘雪红, 颜珣, 张建萍, 韩日畴 (2014)
Photorhabdus luminescens LN2转座突变菌株的研究 -
J. Johansson, Pierre Mandin, A. Renzoni, C. Chiaruttini, M. Springer, P. Cossart (2002)
An RNA Thermosensor Controls Expression of Virulence Genes in Listeria monocytogenesCell, 110
-
B. Pearce, Y. Yin, H. Masure (1993)
Genetic identification of exported proteins in Streptococcus pneumoniaeMolecular Microbiology, 9
-
Sabine Stampfl, M. Doetsch, M. Beich-Frandsen, R. Schroeder (2013)
Characterization of the kinetics of RNA annealing and strand displacement activities of the E. coli DEAD-box helicase CsdARNA Biology, 10
-
Jérôme Gury, L. Barthelmebs, J. Cavin (2004)
Random transposon mutagenesis of Lactobacillus plantarum by using the pGh9:ISS1 vector to clone genes involved in the regulation of phenolic acid metabolismArchives of Microbiology, 182
-
Vanessa Khemici, Isabelle Toesca, L. Poljak, N. Vanzo, A. Carpousis (2004)
The RNase E of Escherichia coli has at least two binding sites for DEAD‐box RNA helicases: functional replacement of RhlB by RhlEMolecular Microbiology, 54
-
L. Rajkowitsch, Doris Chen, Sabine Stampfl, K. Semrad, C. Waldsich, O. Mayer, M. Jantsch, R. Konrat, U. Bläsi, R. Schroeder (2007)
RNA Chaperones, RNA Annealers and RNA HelicasesRNA Biology, 4
-
A. Srivastava, David Schlessinger (1988)
Coregulation of processing and translation: mature 5' termini of Escherichia coli 23S ribosomal RNA form in polysomes.Proceedings of the National Academy of Sciences of the United States of America, 85 19
-
S. Morlang, W. Weglöhner, F. Franceschi (1999)
Hera from Thermus thermophilus: the first thermostable DEAD-box helicase with an RNase P protein motif.Journal of molecular biology, 294 3
-
Yan-mei Xu, Xuefang Xu, R. Lan, Y. Xiong, C. Ye, Zhihong Ren, Li Liu, Ai-lan Zhao, Long-Fei Wu, Jianguo Xu (2013)
An O Island 172 Encoded RNA Helicase Regulates the Motility of Escherichia coli O157:H7PLoS ONE, 8
-
S. Jäger, O. Fuhrmann, C. Heck, M. Hebermehl, E. Schiltz, R. Rauhut, G. Klug (2001)
An mRNA degrading complex in Rhodobacter capsulatus.Nucleic acids research, 29 22
-
P. Bergholz, C. Bakermans, J. Tiedje (2009)
Psychrobacter arcticus 273-4 Uses Resource Efficiency and Molecular Motion Adaptations for Subzero Temperature GrowthJournal of Bacteriology, 191
-
M. Tamura, Johan Kers, Stanley Cohen (2012)
Second-Site Suppression of RNase E Essentiality by Mutation of the deaD RNA Helicase in Escherichia coliJournal of Bacteriology, 194
-
Assembly of bacterial ribosomes
Annu Rev Biochem, 80
-
A. Resch, B. Večerek, Kristina Palavra, U. Bläsi (2010)
Requirement of the CsdA DEAD-box helicase for low temperature riboregulation of rpoS mRNARNA Biology, 7
-
Aydan Salman-Dilgimen, Pierre-Olivier Hardy, J. Radolf, M. Caimano, G. Chaconas (2013)
HrpA, an RNA Helicase Involved in RNA Processing, Is Required for Mouse Infectivity and Tick Transmission of the Lyme Disease SpirochetePLoS Pathogens, 9
-
Quansheng Yang, E. Jankowsky (2006)
The DEAD-box protein Ded1 unwinds RNA duplexes by a mode distinct from translocating helicasesNature Structural &Molecular Biology, 13
-
V. Briolat, G. Reysset (2002)
Identification of the Clostridium perfringens Genes Involved in the Adaptive Response to Oxidative StressJournal of Bacteriology, 184
-
Shengkang Li, Xiang Xiao, P. Sun, Fengping Wang (2008)
Screening of genes regulated by cold shock in Shewanella piezotolerans WP3 and time course expression of cold-regulated genesArchives of Microbiology, 189
-
J. Charollais, Delphine Pflieger, J. Vinh, M. Dreyfus, I. Iost (2003)
The DEAD‐box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coliMolecular Microbiology, 48
-
Vanessa Khemici, A. Carpousis (2003)
The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP‐stabilizersMolecular Microbiology, 51
-
Y. Chan, Sarita Raengpradub, K. Boor, M. Wiedmann (2007)
Microarray-Based Characterization of the Listeria monocytogenes Cold Regulon in Log- and Stationary-Phase CellsApplied and Environmental Microbiology, 73
-
C. Jain (2007)
The E. coli RhlE RNA helicase regulates the function of related RNA helicases during ribosome assembly.RNA, 14 2
-
DEAD-box RNA helicases in Escherichia coli
Nucleic Acids Res, 34
-
Caroline Bäreclev, K. Vaitkevicius, Sakura Netterling, J. Johansson (2014)
DExD-box RNA-helicases in Listeria monocytogenes are important for growth, ribosomal maturation, rRNA processing and virulence factor expressionRNA Biology, 11
-
Vanessa Khemici, L. Poljak, B. Luisi, A. Carpousis (2008)
The RNase E of Escherichia coli is a membrane‐binding proteinMolecular Microbiology, 70
-
Daniel Wilson, K. Nierhaus (2007)
The Weird and Wonderful World of Bacterial Ribosome RegulationCritical Reviews in Biochemistry and Molecular Biology, 42
-
Fedor Karginov, J. Caruthers, Yaoxiong Hu, D. Mckay, O. Uhlenbeck (2005)
YxiN Is a Modular Protein Combining a DExD/H Core and a Specific RNA-binding Domain*Journal of Biological Chemistry, 280
-
V. Broussolle, Franck Pandiani, Nabila Haddad, C. Michaud, F. Carlin, C. Nguyen-the, Julien Brillard (2010)
Insertional mutagenesis reveals genes involved in Bacillus cereus ATCC 14579 growth at low temperature.FEMS microbiology letters, 306 2
-
Evidence that the SKI antiviral system of Saccharomyces cerevisiae acts by blocking expression of viral mRNA
Mol Cell Biol, 13
-
Eveliina Palonen, M. Lindström, P. Somervuo, P. Johansson, J. Björkroth, H. Korkeala (2011)
Requirement for RNA Helicase CsdA for Growth of Yersinia pseudotuberculosis IP32953 at Low TemperaturesApplied and Environmental Microbiology, 78
-
P. Quoc, P. Genevaux, M. Pajunen, H. Savilahti, C. Georgopoulos, J. Schrenzel, W. Kelley (2006)
Isolation and Characterization of Biofilm Formation-Defective Mutants of Staphylococcus aureusInfection and Immunity, 75
-
Inga Jarmoskaite, H. Bhaskaran, S. Seifert, R. Russell (2014)
DEAD-box protein CYT-19 is activated by exposed helices in a group I intron RNAProceedings of the National Academy of Sciences, 111
-
L. Xu, L. Wang, F. Li, L. Wu, Y. Shi (2017)
DEAD-box RNA helicase -
L. Ballut, B. Marchadier, Aurélie Baguet, C. Tomasetto, B. Séraphin, H. Hir (2005)
The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activityNature Structural &Molecular Biology, 12
-
Sylvain Durand, L. Gilet, P. Bessières, P. Nicolas, C. Condon (2012)
Three Essential Ribonucleases—RNase Y, J1, and III—Control the Abundance of a Majority of Bacillus subtilis mRNAsPLoS Genetics, 8
-
Jovanka Koo, Juno Choe, S. Moseley (2004)
HrpA, a DEAH‐box RNA helicase, is involved in mRNA processing of a fimbrial operon in Escherichia coliMolecular Microbiology, 52
-
J. Bernstein, Pei-Hsun Lin, Stanley Cohen, S. Lin-Chao (2004)
Global analysis of Escherichia coli RNA degradosome function using DNA microarrays.Proceedings of the National Academy of Sciences of the United States of America, 101 9
-
C. Roux, Jonathon DeMuth, P. Dunman (2011)
Characterization of Components of the Staphylococcus aureus mRNA Degradosome Holoenzyme-Like ComplexJournal of Bacteriology, 193
-
J. Cruz, D. Kressler, P. Linder (1999)
Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families.Trends in biochemical sciences, 24 5
-
(2004)
Nucleic Acids Res 2004;32:2751–9 -
S. Laalami, P. Bessières, A. Rocca, L. Zig, P. Nicolas, H. Putzer (2013)
Bacillus subtilis RNase Y Activity In Vivo Analysed by Tiling MicroarraysPLoS ONE, 8
-
S. Oun, Peter Redder, Jean-Philippe Didier, P. François, A. Corvaglia, E. Buttazzoni, Caroline Giraud, M. Girard, J. Schrenzel, P. Linder (2013)
The CshA DEAD-box RNA helicase is important for quorum sensing control in Staphylococcus aureusRNA Biology, 10
-
S. Bilge, J. Apostol, M. Aldape, S. Moseley (1993)
mRNA processing independent of RNase III and RNase E in the expression of the F1845 fimbrial adhesin of Escherichia coli.Proceedings of the National Academy of Sciences of the United States of America, 90
-
R. Chellappa, A. Veeraraghavan, Narayanan Ramanathan, Chew-Yean Yam, M. Nixon, A. Elgammal, J. Boyd, J. Little, N. Lynnerup, P. Larsen, Douglas Reynolds (2009)
Genetic Identification -
Yi-Chun Tsai, D. Du, Lilianha Domínguez-Malfavón, Daniela Dimastrogiovanni, Jonathan Cross, A. Callaghan, J. García-Mena, B. Luisi (2012)
Recognition of the 70S ribosome and polysome by the RNA degradosome in Escherichia coliNucleic Acids Research, 40
-
Lauri Peil, K. Virumäe, J. Remme (2008)
Ribosome assembly in Escherichia coli strains lacking the RNA helicase DeaD/CsdA or DbpAThe FEBS Journal, 275
-
K. Kossen, O. Uhlenbeck (1999)
Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins.Nucleic acids research, 27 19
-
S. Nicol, F. Fuller-Pace (1995)
The "DEAD box" protein DbpA interacts specifically with the peptidyltransferase center in 23S rRNA.Proceedings of the National Academy of Sciences of the United States of America, 92 25
-
V. López-Ramírez, L. Alcaraz, G. Moreno-Hagelsieb, G. Olmedo-Álvarez (2011)
Phylogenetic Distribution and Evolutionary History of Bacterial DEAD-Box ProteinsJournal of Molecular Evolution, 72
-
Martin Linden, R. Hartmann, D. Klostermeier (2008)
The putative RNase P motif in the DEAD box helicase Hera is dispensable for efficient interaction with RNA and helicase activityNucleic Acids Research, 36
-
(2001)
hairpin in 23 S rRNA -
J. Lu, H. Aoki, M. Ganoza (1999)
Molecular characterization of a prokaryotic translation factor homologous to the eukaryotic initiation factor eIF4A.The international journal of biochemistry & cell biology, 31 1
-
R. Britton (2009)
Role of GTPases in bacterial ribosome assembly.Annual review of microbiology, 63
-
Soraya Aït-Bara, A. Carpousis (2010)
Characterization of the RNA Degradosome of Pseudoalteromonas haloplanktis: Conservation of the RNase E-RhlB Interaction in the GammaproteobacteriaJournal of Bacteriology, 192
-
I. Moll, Sonja Grill, A. Gründling, U. Bläsi (2002)
Effects of ribosomal proteins S1, S2 and the DeaD/CsdA DEAD‐box helicase on translation of leaderless and canonical mRNAs in Escherichia coliMolecular Microbiology, 44
-
J. Janda, S. Abbott (2014)
The genus Shewanella: from the briny depths below to human pathogenCritical Reviews in Microbiology, 40
-
Karen Hunger, C. Beckering, Frank Wiegeshoff, P. Graumann, M. Marahiel (2006)
Cold-Induced Putative DEAD Box RNA Helicases CshA and CshB Are Essential for Cold Adaptation and Interact with Cold Shock Protein B in Bacillus subtilisJournal of Bacteriology, 188
-
A. Jankowsky, Ulf-Peter Guenther, E. Jankowsky (2010)
The RNA helicase databaseNucleic Acids Research, 39
-
D. Chamot, Kimberley Colvin, Sonya Kujat-Choy, G. Owttrim (2005)
RNA Structural Rearrangement via Unwinding and Annealing by the Cyanobacterial RNA Helicase, CrhR*Journal of Biological Chemistry, 280
-
K. Nierhaus (1991)
The assembly of prokaryotic ribosomes.Biochimie, 73 6
-
Franck Pandiani, Julien Brillard, I. Bornard, C. Michaud, S. Chamot, C. Nguyen-the, V. Broussolle (2010)
Differential Involvement of the Five RNA Helicases in Adaptation of Bacillus cereus ATCC 14579 to Low Growth TemperaturesApplied and Environmental Microbiology, 76
-
R. Novick, H. Ross, S. Projan, J. Kornblum, B. Kreiswirth, S. Moghazeh (1993)
Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule.The EMBO Journal, 12
-
P. Linder, Paul Lasko, M. Ashburner, P. Leroy, Peter Nielsen, K. Nishi, J. Schnier, P. Slonimski (1989)
Birth of the D-E-A-D boxNature, 337
-
Lenz Steimer, J. Wurm, Martin Linden, M. Rudolph, J. Wöhnert, D. Klostermeier (2013)
Recognition of two distinct elements in the RNA substrate by the RNA-binding domain of the T. thermophilus DEAD box helicase HeraNucleic Acids Research, 41
-
A. Gorbalenya, E. Koonin (1993)
Helicases: amino acid sequence comparisons and structure-function relationshipsCurrent Opinion in Structural Biology, 3
-
Leonie Rempeters, Á. Kovács, C. Wrede, Claudia Baierlein, H. Krebber, O. Kuipers, Jörg Stülkea (2013)
DEAD-Box RNA Helicases in Bacillus subtilis Have Multiple Functions and Act Independently from Each Other DEAD-Box RNA Helicases in Bacillus subtilis Have Multiple Functions and Act Independently from Each Other -
V. Chandran, L. Poljak, N. Vanzo, Anne Leroy, R. Miguel, J. Fernández-Recio, J. Parkinson, Christopher Burns, A. Carpousis, B. Luisi (2007)
Recognition and cooperation between the ATP-dependent RNA helicase RhlB and ribonuclease RNase E.Journal of molecular biology, 367 1
-
Béatrice Py, C. Higgins, H. Krisch, A. Carpousis (1996)
A DEAD-box RNA helicase in the Escherichia coli RNA degradosomeNature, 381
-
(2006)
Nucleic Acids Research Advance Access published August 25, 2006 SURVEY AND SUMMARY DEAD-box RNA helicases in Escherichia coli -
K. Kossen, Fedor Karginov, O. Uhlenbeck (2002)
The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA.Journal of molecular biology, 324 4
-
Camille Diges, O. Uhlenbeck (2001)
Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNAThe EMBO Journal, 20
-
Anke Mulder, C. Yoshioka, Andrea Beck, A. Bunner, R. Milligan, C. Potter, B. Carragher, J. Williamson (2010)
Visualizing Ribosome Biogenesis: Parallel Assembly Pathways for the 30S SubunitScience, 330
-
(2013)
aureus. RNA Biol 2013;10:157–65 -
E. Huntzinger, S. Boisset, Cosmin Saveanu, Y. Benito, Thomas Geissmann, A. Namane, G. Lina, J. Etienne, B. Ehresmann, C. Ehresmann, A. Jacquier, F. Vandenesch, P. Romby (2005)
Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expressionThe EMBO Journal, 24
-
Michael Baureder, L. Hederstedt (2012)
Genes Important for Catalase Activity in Enterococcus faecalisPLoS ONE, 7
-
P. Linder (2000)
DEAD-box proteinsCurrent Biology, 10
-
S. Mohr, J. Stryker, A. Lambowitz (2002)
A DEAD-Box Protein Functions as an ATP-Dependent RNA Chaperone in Group I Intron SplicingCell, 109
-
T. Sengoku, O. Nureki, A. Nakamura, Satoru Kobayashi, S. Yokoyama (2006)
Structural Basis for RNA Unwinding by the DEAD-Box Protein Drosophila VasaCell, 125
-
(2017)
mRNA Processing -
Megan Talkington, G. Siuzdak, J. Williamson (2005)
An assembly landscape for the 30S ribosomal subunitNature, 438
-
M. Kálmán, H. Murphy, M. Cashel (1991)
rhlB, a new Escherichia coli K-12 gene with an RNA helicase-like protein sequence motif, one of at least five such possible genes in a prokaryote.The New biologist, 3 9
-
Martin Lehnik‐Habrink, H. Pförtner, Leonie Rempeters, Nico Pietack, C. Herzberg, J. Stülke (2010)
The RNA degradosome in Bacillus subtilis: identification of CshA as the major RNA helicase in the multiprotein complexMolecular Microbiology, 77
-
K. Jagessar, C. Jain (2010)
Functional and molecular analysis of Escherichia coli strains lacking multiple DEAD-box helicases.RNA, 16 7
-
Olivier Cordin, J. Banroques, N. Tanner, P. Linder (2006)
The DEAD-box protein family of RNA helicases.Gene, 367
-
D. Wassarman, J. Steitz (1991)
Alive with DEAD proteinsNature, 349
-
K. Nishi, F. Morel-Deville, J. Hershey, T. Leighton, J. Schnier (1988)
An eIF-4A-like protein is a suppressor of an Escherichia coli mutant defective in 50S ribosomal subunit assemblyNature, 336
-
Maria Söderberg, N. Cianciotto (2009)
Mediators of Lipid A Modification, RNA Degradation, and Central Intermediary Metabolism Facilitate the Growth of Legionella pneumophila at Low TemperaturesCurrent Microbiology, 60
-
DEAD-Box RNA helicases in Bacillus subtilis have multiple functions and act independently from each other
J Bacteriol, 195
-
B. Samatanga, D. Klostermeier (2014)
DEAD-box RNA helicase domains exhibit a continuum between complete functional independence and high thermodynamic coupling in nucleotide and RNA duplex recognitionNucleic Acids Research, 42
-
C. Beckering, L. Steil, Michael Weber, U. Völker, M. Marahiel (2002)
Genomewide Transcriptional Analysis of the Cold Shock Response in Bacillus subtilisJournal of Bacteriology, 184
-
D. Klostermeier, M. Rudolph (2008)
A novel dimerization motif in the C-terminal domain of the Thermus thermophilus DEAD box helicase Hera confers substantial flexibility†Nucleic Acids Research, 37
-
T. Baba, T. Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, K. Datsenko, M. Tomita, B. Wanner, H. Mori (2006)
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collectionMolecular Systems Biology, 2
-
Isabelle lost, M. Dreyfus (1994)
mRNAs can be stabilized by DEAD-box proteinsNature, 372
-
M. Buckstein, Jian He, H. Rubin (2007)
Characterization of Nucleotide Pools as a Function of Physiological State in Escherichia coliJournal of Bacteriology, 190
-
N. Awano, Chunying Xu, Haiping Ke, Koichi Inoue, M. Inouye, S. Phadtare (2007)
Complementation Analysis of the Cold-Sensitive Phenotype of the Escherichia coli csdA Deletion StrainJournal of Bacteriology, 189
-
A. Henn, W. Cao, Nicholas Licciardello, Sara Heitkamp, D. Hackney, E. Cruz (2010)
Pathway of ATP utilization and duplex rRNA unwinding by the DEAD-box helicase, DbpAProceedings of the National Academy of Sciences, 107
-
Quansheng Yang, E. Jankowsky (2005)
ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1.Biochemistry, 44 41
-
P. Linder, S. Lemeille, Peter Redder (2014)
Transcriptome-Wide Analyses of 5′-Ends in RNase J Mutants of a Gram-Positive Pathogen Reveal a Role in RNA Maturation, Regulation and DegradationPLoS Genetics, 10
-
A. Stamatakis (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesBioinformatics, 30
-
Li Zhou, A. Zhang, Rong Wang, E. Marcotte, C. Vogel (2013)
The proteomic response to mutants of the Escherichia coli RNA degradosome.Molecular bioSystems, 9 4
-
G. Liou, W. Jane, Stanley Cohen, Na-Sheng Lin, S. Lin-Chao (2001)
RNA degradosomes exist in vivo in Escherichia coli as multicomponent complexes associated with the cytoplasmic membrane via the N-terminal region of ribonuclease E.Proceedings of the National Academy of Sciences of the United States of America, 98 1
-
(2012)
Enterococcus faecalis. PLoS One 2012;7:e36725 -
Jarrod Voss, B. Luisi, S. Hardwick (2014)
Molecular recognition of RhlB and RNase D in the Caulobacter crescentus RNA degradosomeNucleic Acids Research, 42
-
Masayasu Nomura (1972)
Assembly of bacterial ribosomes.Federation proceedings, 31 1
- Publisher
- Oxford University Press
- Copyright
- FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com
- ISSN
- 0168-6445
- eISSN
- 1574-6976
- DOI
- 10.1093/femsre/fuv011
- pmid
- 25907111
- Publisher site
- See Article on Publisher Site
Abstract
RNA helicases of the DEAD-box and DEAH-box families are important players in many processes involving RNA molecules. These proteins can modify RNA secondary structures or intermolecular RNA interactions and modulate RNAprotein complexes. In bacteria, they are known to be involved in ribosome biogenesis, RNA turnover and translation initiation. They thereby play an important role in the adaptation of bacteria to changing environments and to respond to stress conditions.
Journal
FEMS Microbiology Reviews – Oxford University Press
Published: May 23, 2015