Access the full text.
Sign up today, get DeepDyve free for 14 days.
T. Kluyver, B. Ragan-Kelley, Fernando Pérez, B. Granger, M. Bussonnier, J. Frederic, Kyle Kelley, Jessica Hamrick, J. Grout, S. Corlay, Paul Ivanov, Damián Avila, Safia Abdalla, Carol Willing, Jupyter Team (2016)
Jupyter Notebooks - a publishing format for reproducible computational workflows
MotivationComplex bioinformatic data analysis workflows involving multiple scripts in different languages can be difficult to consolidate, share and reproduce. An environment that streamlines the entire processes of data collection, analysis, visualization and reporting of such multi-language analyses is currently lacking.ResultsWe developed Script of Scripts (SoS) Notebook, a web-based notebook environment that allows the use of multiple scripting language in a single notebook, with data flowing freely within and across languages. SoS Notebook enables researchers to perform sophisticated bioinformatic analysis using the most suitable tools for different parts of the workflow, without the limitations of a particular language or complications of cross-language communications.Availability and implementationSoS Notebook is hosted at http://vatlab.github.io/SoS/ and is distributed under a BSD license.
Bioinformatics – Oxford University Press
Published: May 22, 2018
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.