Access the full text.
Sign up today, get DeepDyve free for 14 days.
S. Rasmussen, C. Knudsen, Pasmus Feldberg, Morten Hindsholm (1990)
The coreworld: emergence and evolution of cooperative structures in a computational chemistryPhysica D: Nonlinear Phenomena, 42
J. Crutchfield, M. Mitchell (1995)
Evolution of Emergent Computation
(1991)
Algorithmic chemistry
J. Hopcroft, J. Ullman (1979)
Introduction to Automata Theory, Languages and Computation
F. Varela, H. Maturana, R. Uribe (1974)
Autopoiesis: the organization of living systems, its characterization and a model.Currents in modern biology, 5 4
T. Ray (1991)
An Approach to the Synthesis of Life
M. Eigen, P. Schuster (1977)
A principle of natural self-organizationNaturwissenschaften, 64
(1989)
Inferring statistic
R. Gibbs, G. Weinstock, M. Metzker, D. Muzny, E. Sodergren, S. Scherer, Graham Scott, David Steffen, K. Worley, P. Burch, Geoffrey Okwuonu, S. Hines, L. Lewis, Christine DeRamo, O. Delgado, S. Dugan-Rocha, George Miner, M. Morgan, A. Hawes, Rachel Gill, Celera, R. Holt, M. Adams, P. Amanatides, Holly Baden-Tillson, Mary Barnstead, Soo Chin, C. Evans, S. Ferriera, C. Fosler, A. Glodek, Z. Gu, Donald Jennings, C. Kraft, T. Nguyen, C. Pfannkoch, Cynthia Sitter, G. Sutton, J. Venter, T. Woodage, Douglas Smith, H. Lee, E. Gustafson, P. Cahill, A. Kana, L. Doucette-Stamm, K. Weinstock, K. Fechtel, R. Weiss, D. Dunn, E. Green, R. Blakesley, G. Bouffard, P. Jong, K. Osoegawa, B. Zhu, M. Marra, J. Schein, I. Bosdet, C. Fjell, Steven Jones, M. Krzywinski, Carrie Mathewson, A. Siddiqui, N. Wye, J. McPherson, Shaying Zhao, C. Fraser, J. Shetty, S. Shatsman, Keita Geer, Yixin Chen, Sofyia Abramzon, W. Nierman, P. Havlak, Rui Chen, K. Durbin, Amy Egan, Yanru Ren, Xing-Zhi Song, Bingshan Li, Yue Liu, X. Qin, S. Cawley, A. Cooney, Lisa D'Souza, Kirt Martin, Jia Wu, M. Gonzalez-Garay, Andrew Jackson, Ken Kalafus, M. McLeod, A. Milosavljevic, D. Virk, A. Volkov, D. Wheeler, Zhengdong Zhang, J. Bailey, E. Eichler, Eray Tuzun, E. Birney, Emmanuel Mongin, A. Ureta-Vidal, Cara Woodwark, E. Zdobnov, P. Bork, M. Suyama, D. Torrents, M. Alexandersson, B. Trask, Janet Young, Hui Huang, Huajun Wang, Heming Xing, Sue Daniels, D. Gietzen, Jeanette Schmidt, Kristian Stevens, U. Vitt, J. Wingrove, F. Camara, M. Albà, J. Abril, R. Guigó, A. Smit, I. Dubchak, E. Rubin, O. Couronne, Alexander Poliakov, N. Hübner, D. Ganten, Claudia Goesele, O. Hummel, T. Kreitler, Young-Ae Lee, J. Monti, H. Schulz, H. Zimdahl, H. Himmelbauer, H. Lehrach, H. Jacob, Susan Bromberg, J. Gullings-Handley, M. Jensen-Seaman, A. Kwitek, Jozef Lazar, D. Pasko, P. Tonellato, S. Twigger, C. Ponting, José Duarte, S. Rice, L. Goodstadt, S. Beatson, Richard Emes, E. Winter, C. Webber, P. Brandt, G. Nyakatura, Margaret Adetobi, F. Chiaromonte, L. Elnitski, P. Eswara, R. Hardison, Minmei Hou, D. Kolbe, K. Makova, W. Miller, A. Nekrutenko, C. Riemer, S. Schwartz, James Taylor, Shan Yang, Yi Zhang, K. Lindpaintner, T. Andrews, M. Cáccamo, M. Clamp, Laura Clarke, V. Curwen, R. Durbin, E. Eyras, S. Searle, G. Cooper, S. Batzoglou, M. Brudno, A. Sidow, Eric Stone, B. Payseur, G. Bourque, C. López-Otín, X. Puente, Kushal Chakrabarti, Sourav Chatterji, Colin Dewey, L. Pachter, Nicolas Bray, V. Yap, A. Caspi, G. Tesler, P. Pevzner, D. Haussler, K. Roskin, R. Baertsch, H. Clawson, T. Furey, A. Hinrichs, D. Karolchik, W. Kent, K. Rosenbloom, Heather Trumbower, M. Weirauch, D. Cooper, P. Stenson, Bin Ma, M. Brent, M. Arumugam, David Shteynberg, R. Copley, Martin Taylor, H. Riethman, U. Mudunuri, Jane Peterson, M. Guyer, A. Felsenfeld, S. Old, Stephen Mockrin, F. Collins (2004)
Genome sequence of the Brown Norway rat yields insights into mammalian evolutionNature, 428
T. Cover, Joy Thomas (1991)
Elements of Information Theory
T. Ikegami, T. Hashimoto (2000)
Replication and Diversity in Machine-Tape Coevolutionary Systems
J. Crutchfield, E. Nimwegen (1999)
The Evolutionary Unfolding of ComplexityarXiv: Adaptation and Self-Organizing Systems
(2003)
The origins of genome complexity.Science, 302:1401–1404
J. Farmer, N. Packard, A. Perelson (1986)
The immune system, adaptation, and machine learningPhysica D: Nonlinear Phenomena, 2
(1992)
Dynamics of programmable matter
(1966)
Theory of Self-Reproducing Automata. University of Illinois Press, Urbana
(1974)
Autopoiesis: The organization of living
J. Brookshear (1989)
Theory of Computation: Formal Languages, Automata, and Complexity
(1979)
1979).Introduction to Automata Theory, Languages, and Computation
J. Crutchfield, K. Young (1989)
Inferring statistical complexity.Physical review letters, 63 2
(2003)
The origins of genome
H. Nürnberg (1981)
The Hypercycle. A Principle of Natural Self Organization.
O. Rössler (1979)
Recursive evolution.Bio Systems, 11 2-3
W. Fontana, L. Buss (1996)
The Barrier of Objects: From Dynamical Systems to Bounded Organizations
(1974)
topoiesis : The organization of living systems
(1974)
Au - topoiesis : The organization of living systems
(1967)
What is Life? Mind and Matter
J. Crutchfield (1994)
The calculi of emergence: computation, dynamics and inductionPhysica D: Nonlinear Phenomena, 75
C. Adami, Titus Brown, W. Kellogg, Radiation Lab (1994)
Evolutionary Learning in the 2D Artificial Life System "Avida"arXiv: Adaptation and Self-Organizing Systems
(1992)
namics of programmable matter
J. Crutchfield, Olof Görnerup (2004)
Objects that make objects: the population dynamics of structural complexityJournal of The Royal Society Interface, 3
M. Lynch, J. Conery (2003)
The Origins of Genome ComplexityScience, 302
J. Neumann, A. Burks (1967)
Theory Of Self Reproducing Automata
R. Bagley, J. Farmer, Stuart Kauffman, Norman Packard, A. Perelson, I. Stadnyk (1989)
Modeling adaptive biological systems.Bio Systems, 23 2-3
Hierarchical Self-Organization in the Finitary Process Soup O
Current analyses of genomes from numerous species show that the diversity of their functional and behavioral characters is not proportional to the number of genes that encode the organism. We investigate the hypothesis that the diversity of organismal character is due to hierarchical organization. We do this with the recently introduced model of the finitary process soup , which allows for a detailed mathematical and quantitative analysis of the population dynamics of structural complexity. Here we show that global complexity in the finitary process soup is due to the emergence of successively higher levels of organization, that the hierarchical structure appears spontaneously, and that the process of structural innovation is facilitated by the discovery and maintenance of relatively noncomplex, but general, individuals in a population.
Artificial Life – MIT Press
Published: Jul 1, 2008
Keywords: Pre-biotic evolution; structural complexity; hierarchy; self-organization; networks; population dynamics
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.