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Estimates of the twinning fraction for macromolecular crystals using statistical models accounting for experimental errors

Estimates of the twinning fraction for macromolecular crystals using statistical models... An advanced statistical model is suggested that is designed to estimate the twinning fraction in merohedrally (or pseudo-merohedrally) twinned crystals. The model takes experimental errors of the measured intensities into account and is adapted to the accuracy of a particular X-ray experiment through the standard deviations of the reflection intensities. The theoretical probability distributions for the improved model are calculated using a Monte Carlo-type simulation procedure. The use of different statistical criteria (including likelihood) to estimate the optimal twinning-fraction value is discussed. The improved model enables better agreement of theoretical and observed cumulative distribution functions to be obtained and produces twinning-fraction estimates that are closer to the refined values in comparison to the conventional model, which disregards experimental errors. The results of the two approaches converge when applied to selected subsets of measured intensities of high accuracy. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Acta Crystallographica Section D: Biological Crystallography International Union of Crystallography

Estimates of the twinning fraction for macromolecular crystals using statistical models accounting for experimental errors

Estimates of the twinning fraction for macromolecular crystals using statistical models accounting for experimental errors

Acta Crystallographica Section D: Biological Crystallography , Volume 63 (11): 1129 – Oct 17, 2007

Abstract

An advanced statistical model is suggested that is designed to estimate the twinning fraction in merohedrally (or pseudo-merohedrally) twinned crystals. The model takes experimental errors of the measured intensities into account and is adapted to the accuracy of a particular X-ray experiment through the standard deviations of the reflection intensities. The theoretical probability distributions for the improved model are calculated using a Monte Carlo-type simulation procedure. The use of different statistical criteria (including likelihood) to estimate the optimal twinning-fraction value is discussed. The improved model enables better agreement of theoretical and observed cumulative distribution functions to be obtained and produces twinning-fraction estimates that are closer to the refined values in comparison to the conventional model, which disregards experimental errors. The results of the two approaches converge when applied to selected subsets of measured intensities of high accuracy.

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References (12)

Publisher
International Union of Crystallography
Copyright
Copyright (c) 2007 International Union of Crystallography
Subject
twinning, merohedral twinning, twinning fraction, statistical modelling, likelihood
ISSN
0907-4449
eISSN
1399-0047
DOI
10.1107/S0907444907044411
pmid
18007028
Publisher site
See Article on Publisher Site

Abstract

An advanced statistical model is suggested that is designed to estimate the twinning fraction in merohedrally (or pseudo-merohedrally) twinned crystals. The model takes experimental errors of the measured intensities into account and is adapted to the accuracy of a particular X-ray experiment through the standard deviations of the reflection intensities. The theoretical probability distributions for the improved model are calculated using a Monte Carlo-type simulation procedure. The use of different statistical criteria (including likelihood) to estimate the optimal twinning-fraction value is discussed. The improved model enables better agreement of theoretical and observed cumulative distribution functions to be obtained and produces twinning-fraction estimates that are closer to the refined values in comparison to the conventional model, which disregards experimental errors. The results of the two approaches converge when applied to selected subsets of measured intensities of high accuracy.

Journal

Acta Crystallographica Section D: Biological CrystallographyInternational Union of Crystallography

Published: Oct 17, 2007

Keywords: twinning ; merohedral twinning ; twinning fraction ; statistical modelling ; likelihood .

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