Rapid allopolyploid radiation of moonwort ferns (Botrychium; Ophioglossaceae) revealed by PacBio sequencing of homologous and homeologous nuclear regions

Rapid allopolyploid radiation of moonwort ferns (Botrychium; Ophioglossaceae) revealed by PacBio... Molecular Phylogenetics and Evolution 120 (2018) 342–353 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Rapid allopolyploid radiation of moonwort ferns (Botrychium; Ophioglossaceae) revealed by PacBio sequencing of homologous and homeologous nuclear regions a,b, a c b Benjamin Dauphin , Jason R. Grant , Donald R. Farrar , Carl J. Rothfels Laboratoire de Génétique Évolutive, Université de Neuchâtel, rue Emile-Argand 11, 2000 Neuchâtel, Switzerland Department of Integrative Biology, University of California at Berkeley, 3040 Valley Life Sciences Building, Berkeley, CA 94720-3140, USA Department of Ecology, Evolution, and Organismal Biology, Iowa State University, 353 Bessey Hall, Ames, IA 50011-1020, USA ARTICLE I NFO ABSTRACT Keywords: Polyploidy is a major speciation process in vascular plants, and is postulated to be particularly important in Ferns shaping the diversity of extant ferns. However, limitations in the availability of bi-parental markers for ferns Low-copy markers have greatly limited phylogenetic investigation of polyploidy in this group. With a large number of allopolyploid PacBio species, the genus Botrychium is a classic example in ferns where recurrent polyploidy is postulated to have Polyploid network driven frequent speciation events. Here, we use PacBio sequencing and the PURC bioinformatics pipeline to PURC capture all homeologous http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Molecular Phylogenetics and Evolution Elsevier

Rapid allopolyploid radiation of moonwort ferns (Botrychium; Ophioglossaceae) revealed by PacBio sequencing of homologous and homeologous nuclear regions

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Publisher
Elsevier
Copyright
Copyright © 2017 Elsevier Inc.
ISSN
1055-7903
eISSN
1095-9513
D.O.I.
10.1016/j.ympev.2017.11.025
Publisher site
See Article on Publisher Site

Abstract

Molecular Phylogenetics and Evolution 120 (2018) 342–353 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Rapid allopolyploid radiation of moonwort ferns (Botrychium; Ophioglossaceae) revealed by PacBio sequencing of homologous and homeologous nuclear regions a,b, a c b Benjamin Dauphin , Jason R. Grant , Donald R. Farrar , Carl J. Rothfels Laboratoire de Génétique Évolutive, Université de Neuchâtel, rue Emile-Argand 11, 2000 Neuchâtel, Switzerland Department of Integrative Biology, University of California at Berkeley, 3040 Valley Life Sciences Building, Berkeley, CA 94720-3140, USA Department of Ecology, Evolution, and Organismal Biology, Iowa State University, 353 Bessey Hall, Ames, IA 50011-1020, USA ARTICLE I NFO ABSTRACT Keywords: Polyploidy is a major speciation process in vascular plants, and is postulated to be particularly important in Ferns shaping the diversity of extant ferns. However, limitations in the availability of bi-parental markers for ferns Low-copy markers have greatly limited phylogenetic investigation of polyploidy in this group. With a large number of allopolyploid PacBio species, the genus Botrychium is a classic example in ferns where recurrent polyploidy is postulated to have Polyploid network driven frequent speciation events. Here, we use PacBio sequencing and the PURC bioinformatics pipeline to PURC capture all homeologous

Journal

Molecular Phylogenetics and EvolutionElsevier

Published: Mar 1, 2018

References

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