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to the maximum number of cliques of H with a common vertex, for every induced subgraph H of G. Coordinated graphs are a subclass of perfect graphs . The list of minimal forbidden induced subgraphs for the class ...
. In this article, we present a survey of visualization approaches applied to the analysis of biological data. We focus on graph -based visualizations and tools that use coordinated multiple views to represent high ...
with the properties of Gexp. Since the model networks are only based on distance-dependent connection probabilities, one cannot expect perfect agreement (edge-by-edge) with the biological connectivity graph Gexp ...
in the 3D space (Figure 1A). Individual atoms are typically assigned vectors of features corresponding to atomic coordinates and additional information, such as the atom type, partial charge and amino acid ...
of clusters as cliques - NP-hard - Reliant on heuristic solutions - No cluster detection in sparse graph |$O(2^N)$| SNN-Cliq [18] 2015 Louvain - Relatively low time complexity - Heuristic can lead to bad ...
a weighted graph G and a subset of its nodes S, find subsets of S that are significantly connected within G. A classic member of this family is the Maximum Clique problem, where S includes all nodes in G ...
. A novel graph -theoretic approach called ‘Max Clique Builder’ is introduced that identifies and organizes sets of coordinately regulated genes, such as those encoding subunits of the vacuolar H+-ATPase ...
fractions including endosomes and detergent-resistant lipid rafts as previously characterized [32,33]. New approaches were devised to analyze these data. We previously experimented with different ...
) product between a random topology matrix T and a random interaction strength matrix J. The 0/1 adjacency matrix T defines a directed graph , whose edges are sampled from specified distributions of incoming ...
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