•16 HBV strains were confirmed as harboring complex SVs.•Various combinations of canonical SVs were observed in HBV strains with complex SVs.•43.8% of HBV strains with complex SVs contained unique S1 promoter insertions.•Complex SVs were observed in distinguishing genetic rearrangements between WMHV and HBV.•Genetic rearrangements of HBV from human and non-human primates showed unique patterns of complex SVs.
Virus Research – Elsevier
Published: Jun 15, 2017
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