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of a molecular crystal to a cube by an affine transformation and then analyze it using persistent homology. Download: PPT PowerPoint slide PNG larger image TIFF original image Fig 2. Basic cubic lattices ...
through different colors. On the right, 3 putative models to measure network communication efficiency between node i and node j are illustrated: SPE, or communication via the shortest path; NSI, which also ...
interesting graph analysis scenarios, the sizes of the graphs to be analyzed are on the order of millions or even billions of vertices. For example, the social network defined by Facebook users has over 2.3 ...
of network substructure can also be posed in terms of entropy, and there are a plethora of alternative ways in which network entropy can be measured. For instance, one approach is to use entropy ...
were consistent with experimental results on live budding yeast. There is a growing interest to analyze Hi-C datasets and model chromosome interactions using network models [26–28], which has opened ...
the interactions associated with the strongest concerted changes in expression between two biological states or conditions. ExprEssence is a Cytoscape (Saito et al., 2012) plugin for analyzing biological networks ...
Abstract The three-dimensional architecture of syncytial-type cell plates in the endosperm of Arabidopsis has been analyzed at ∼6-nm resolution by means of dual-axis high-voltage electron tomography ...
methods may be used to calculate a set of routes through the reaction network and the corresponding kernel matrices which represent their stoichiometry. Elementary flux modes (EFMs) describe the minimal ...
) anchored by two transmembrane regions (per monomer) in the virus membrane, where it can further assemble into hexameric lattices [14]. PFV capsid assembly commences at the centrosome or microtubule ...
: honeycomb and square. In the honeycomb lattice the DNA helices are located in the nodes of a hexagonal network (Figure 1A). Consequently, every helix has up to three potential neighbors separated by an angle ...
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