A robust phylogeny among major lineages of the East African cichlids

A robust phylogeny among major lineages of the East African cichlids Molecular Phylogenetics and Evolution 100 (2016) 234–242 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev a,b,⇑ a Tetsumi Takahashi , Teiji Sota Department of Zoology, Graduate School of Science, Kyoto University, Sakyo, Kyoto 606-8502, Japan National Institute of Genetics, Yata, Mishima, Shizuoka 411-8540, Japan ar ti c l e i nf o ab stra ct Article history: The huge monophyletic group of the East African cichlid radiations (EAR) consists of thousands of species Received 10 December 2015 belonging to 12–14 tribes; the number of tribes differs among studies. Many studies have inferred Revised 16 March 2016 phylogenies of EAR tribes using various genetic markers. However, these phylogenies partly contradict Accepted 7 April 2016 one another and can have weak statistic support. In this study, we conducted maximum-likelihood Available online 8 April 2016 (ML) phylogenetic analyses using restriction site-associated DNA (RAD) sequences and propose a new robust phylogenetic hypothesis among Lake Tanganyika cichlid fishes, which cover most EAR tribes. Keywords: Data matrices can vary in size and contents depending on the strategies used to process RAD sequences. Cichlidae Therefore, we prepared 23 data matrices with various processing strategies. The ML phylogenies inferred Lake Tanganyika 6 7 http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Molecular Phylogenetics and Evolution Elsevier

A robust phylogeny among major lineages of the East African cichlids

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Publisher
Elsevier
Copyright
Copyright © 2016 Elsevier Inc.
ISSN
1055-7903
eISSN
1095-9513
D.O.I.
10.1016/j.ympev.2016.04.012
Publisher site
See Article on Publisher Site

Abstract

Molecular Phylogenetics and Evolution 100 (2016) 234–242 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev a,b,⇑ a Tetsumi Takahashi , Teiji Sota Department of Zoology, Graduate School of Science, Kyoto University, Sakyo, Kyoto 606-8502, Japan National Institute of Genetics, Yata, Mishima, Shizuoka 411-8540, Japan ar ti c l e i nf o ab stra ct Article history: The huge monophyletic group of the East African cichlid radiations (EAR) consists of thousands of species Received 10 December 2015 belonging to 12–14 tribes; the number of tribes differs among studies. Many studies have inferred Revised 16 March 2016 phylogenies of EAR tribes using various genetic markers. However, these phylogenies partly contradict Accepted 7 April 2016 one another and can have weak statistic support. In this study, we conducted maximum-likelihood Available online 8 April 2016 (ML) phylogenetic analyses using restriction site-associated DNA (RAD) sequences and propose a new robust phylogenetic hypothesis among Lake Tanganyika cichlid fishes, which cover most EAR tribes. Keywords: Data matrices can vary in size and contents depending on the strategies used to process RAD sequences. Cichlidae Therefore, we prepared 23 data matrices with various processing strategies. The ML phylogenies inferred Lake Tanganyika 6 7

Journal

Molecular Phylogenetics and EvolutionElsevier

Published: Jul 1, 2016

References

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