Molecular Phylogenetics and Evolution 100 (2016) 234–242 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev a,b,⇑ a Tetsumi Takahashi , Teiji Sota Department of Zoology, Graduate School of Science, Kyoto University, Sakyo, Kyoto 606-8502, Japan National Institute of Genetics, Yata, Mishima, Shizuoka 411-8540, Japan ar ti c l e i nf o ab stra ct Article history: The huge monophyletic group of the East African cichlid radiations (EAR) consists of thousands of species Received 10 December 2015 belonging to 12–14 tribes; the number of tribes differs among studies. Many studies have inferred Revised 16 March 2016 phylogenies of EAR tribes using various genetic markers. However, these phylogenies partly contradict Accepted 7 April 2016 one another and can have weak statistic support. In this study, we conducted maximum-likelihood Available online 8 April 2016 (ML) phylogenetic analyses using restriction site-associated DNA (RAD) sequences and propose a new robust phylogenetic hypothesis among Lake Tanganyika cichlid ﬁshes, which cover most EAR tribes. Keywords: Data matrices can vary in size and contents depending on the strategies used to process RAD sequences. Cichlidae Therefore, we prepared 23 data matrices with various processing strategies. The ML phylogenies inferred Lake Tanganyika 6 7
Molecular Phylogenetics and Evolution – Elsevier
Published: Jul 1, 2016
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