Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/wiley/transcript-profiles-and-deduced-changes-of-metabolic-pathways-in-zTmtnIpxQD
References (74)
-
I. Feussner, C. Wasternack, H. Kindl, H. Kuhn (1995)
Lipoxygenase catalysed oxygenation of storage lipids is implicated in lipid mobilization during germinationCurr. Opin. Biotechnol., 92
-
Fang-Xiu Xu, M. Chye (1999)
Expression of cysteine proteinase during developmental events associated with programmed cell death in brinjal.The Plant journal : for cell and molecular biology, 17 3
-
J.‐M. Lee, M.E. Williams, V.T. Scott, J.A. Rafalski (2002)
DNA array profiling of gene expression changes during maize embryo developmentAnnu. Rev. Plant Physiol. Plant Mol. Biol., 2
-
H. Neuhaus, M. Emes (2003)
NONPHOTOSYNTHETIC METABOLISM IN PLASTIDS.Annual review of plant physiology and plant molecular biology, 51
-
A. Fath, P. Bethke, J. Lonsdale, R. Meza‐Romero, Russel Jones (2000)
Programmed cell death in cereal aleuronePlant Molecular Biology, 44
-
E. Potokina, N. Sreenivasulu, L. Altschmied, W. Michalek, A. Graner (2002)
Differential gene expression during seed germination in barley (Hordeumvulgare L.)Functional & Integrative Genomics, 2
-
A. Fath, P. Bethke, J. Lonsdale, R. Meza‐Romero, R. Jones (2000)
Programmed cell death in cereal aleuroneProc. Natl. Acad. Sci. USA, 44
-
P.S. Chourey, E.W. Taliercio, S.J. Carlson, Y.‐L. Ruan (1998)
Genetic evidence that the two isozymes of sucrose synthase present in developing maize endosperm are critical, one for cell wall integrity and the other for starch biosynthesisAm. J. Hum. Genet., 259
-
Maria Theodorou, F. Cornel, S. Duff, W. Plaxton (1992)
Phosphate starvation-inducible synthesis of the alpha-subunit of the pyrophosphate-dependent phosphofructokinase in black mustard suspension cells.The Journal of biological chemistry, 267 30
-
H. Rolletschek, Ljudmilla Borisjuk, M. Koschorreck, U. Wobus, H. Weber (2002)
Legume embryos develop in a hypoxic environment.Journal of experimental botany, 53 371
-
S. Baud, J. Boutin, M. Miquel, L. Lepiniec, C. Rochat (2002)
An integrated overview of seed development in Arabidopsis thaliana ecotype WSPlant Physiology and Biochemistry, 40
-
S. Ruuska, T. Girke, C. Benning, J. Ohlrogge (2002)
Contrapuntal Networks of Gene Expression during Arabidopsis Seed Filling Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.000877.The Plant Cell Online, 14
-
S. Golombek, H. Rolletschek, U. Wobus, H. Weber (2001)
Control of storage protein accumulation during legume seed developmentJournal of Plant Physiology, 158
-
Ai‐Yu Wang, Man-Han Kao, Weibing Yang, Yiyang Sayion, Li-Fei Liu, Ping-Du Lee, J. Su (1999)
Differentially and developmentally regulated expression of three rice sucrose synthase genes.Plant & cell physiology, 40 8
-
H. Rolletschek, H. Weber, Ljudmilla Borisjuk (2003)
Energy Status and Its Control on Embryogenesis of Legumes. Embryo Photosynthesis Contributes to Oxygen Supply and Is Coupled to Biosynthetic Fluxes1Plant Physiology, 132
-
M. Kanahisa, S. Goto, S. Kawashima, A. Nakaya (2002)
The KEGG database at GenomeNetTheor. Appl. Genet., 30
-
R.T. Miller, A. Christoffels, C. Gopalakrishnan, J. Burke, A.A. Ptitsyn, T.R. Broveak, W.A. Hide (1999)
A comprehensive approach to clustering of expressed human sequences: the sequence tag alignment and consensus knowledge baseSeed Sci. Res., 9
-
M. Stitt (1998)
Pyrophosphate as an energy donor in the cytosol of plant cells: an enigmatic alternative to ATPSeed Sci. Technol., 111
-
W. Weschke, R. Panitz, N. Sauer, Qing Wang, B. Neubohn, H. Weber, U. Wobus (2000)
Sucrose transport into barley seeds: molecular characterization of two transporters and implications for seed development and starch accumulation.The Plant journal : for cell and molecular biology, 21 5
-
E. Potokina, N. Sreenivasulu, L. Altschmied, W. Michalek, A. Graner (2002)
Differential gene expression during seed germination in barley (Hordeum vulgare L.)Plant Cell, 2
-
M. Wang (1997)
The role of abscisic acid in the regulation of barley grain germinationSeed Science and Technology, 25
-
P. Bethke, Russell Jones (2008)
Cell death of barley aleurone protoplasts is mediated by reactive oxygen species.The Plant journal : for cell and molecular biology, 25 1
-
John Patrick, C. Offler (2001)
Compartmentation of transport and transfer events in developing seeds.Journal of experimental botany, 52 356
-
W.C. Plaxton (1996)
The organization and regulation of plant glycolysisPlant Phys, 47
-
A. Bairoch, R. Apweiler (2000)
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000Nucleic acids research, 28 1
-
P. Chourey, E. Taliercio, S. Carlson, Yong-Ling Ruan (1998)
Genetic evidence that the two isozymes of sucrose synthase present in developing maize endosperm are critical, one for cell wall integrity and the other for starch biosynthesisMolecular and General Genetics MGG, 259
-
M. Wang (1997)
The role of abscisic acid in the regulation of barley grain germinationPlant J., 25
-
C.M. Duffus, M.P. Cochrane (1993)
Barley: Chemistry and TechnologyProc. Natl. Acad. Sci. USA
-
W. Plaxton (1996)
THE ORGANIZATION AND REGULATION OF PLANT GLYCOLYSIS.Annual review of plant physiology and plant molecular biology, 47
-
Bjarte Dysvik, I. Jonassen (2001)
J-Express: exploring gene expression data using JavaBioinformatics, 17 4
-
N. Appleford, J. Lenton (1997)
Hormonal regulation of alpha-amylase gene expression in germinating wheat (Triticum aestivum) grainsPhysiologia Plantarum, 100
-
H. Rolletschek, H. Weber, L. Borisjuk (2003)
Energy status and its control on embryogenesis of legumes: embryo photosynthesis contributes to oxygen supply and is coupled to biosynthetic fluxesBot. Acta, 132
-
M. Theodorou, F.A. Cornel, S.M.G. Duff, W.B. Plaxton (1992)
Phosphate starvation‐inducible synthesis of the alpha‐subunit of the pyrophosphate‐dependent phosphofructokinase in black mustard suspension cellsPlant Cell Physiol., 267
-
A. Fath, P. Bethke, Russell Jones (2001)
Enzymes that scavenge reactive oxygen species are down-regulated prior to gibberellic acid-induced programmed cell death in barley aleurone.Plant physiology, 126 1
-
J.D. Bewley, M. Black (1994)
Seeds – Physiology of Development and GerminationPlant Mol. Biol.
-
O. Fiehn, S. Kloska, T. Altmann (2001)
Integrated studies on plant biology using multiparallel techniquesJ. Plant Physiol., 12
-
Fuqiang Chen, M. Foolad (1997)
Molecular organization of a gene in barley which encodes a protein similar to aspartic protease and its specific expression in nucellar cells during degenerationPlant Molecular Biology, 35
-
I. Feussner, C. Wasternack, H. Kindl, H. Kühn (1995)
Lipoxygenase-catalyzed oxygenation of storage lipids is implicated in lipid mobilization during germination.Proceedings of the National Academy of Sciences of the United States of America, 92 25
-
F. Domı́nguez, F. Cejudo (1998)
Germination-related genes encoding proteolytic enzymes are expressed in the nucellus of developing wheat grainsPlant Journal, 15
-
O. Fiehn, S. Kloska, T. Altmann (2001)
Integrated studies on plant biology using multiparallel techniques.Current opinion in biotechnology, 12 1
-
R. Miller, A. Christoffels, C. Gopalakrishnan, J. Burke, A. Ptitsyn, T. Broveak, Winston Hide (1999)
A comprehensive approach to clustering of expressed human gene sequence: the sequence tag alignment and consensus knowledge base.Genome research, 9 11
-
T. Young, D. Gallie (1999)
Analysis of programmed cell death in wheat endosperm reveals differences in endosperm development between cerealsPlant Molecular Biology, 39
-
M. Stitt (1998)
Pyrophosphate as an Energy Donor in the Cytosol of Plant Cells: an Enigmatic Alternative to ATPPlant Biology, 111
-
M.B. Eisen, P.T. Spellman, P.O. Brown, D. Botstein (1998)
Cluster analysis and display of genome‐wide expression patternsPlant Physiol., 95
-
A. Nutbeam, C. Duffus (1978)
Oxygen exchange in the pericarp green layer of immature cereal grains.Plant physiology, 62 3
-
M. Eisen, P. Spellman, P. Brown, D. Botstein (1998)
Cluster analysis and display of genome-wide expression patterns.Proceedings of the National Academy of Sciences of the United States of America, 95 25
-
P. Asokanthan, Robert Johnson, M. Griffith, M. Król (1997)
The photosynthetic potential of canola embryosPhysiologia Plantarum, 101
-
I. Feussner, H. Kühn, C. Wasternack (1997)
Do specific linoleate 13‐lipoxygenases initiate β‐oxidation? 1FEBS Letters, 406
-
A.‐Y. Wang, M.‐H. Kao, W.‐H. Yang, Y. Sayion, L.‐F. Liu, P.‐D. Lee, J.‐C. Su (1999)
Differentially and developmentally regulated expression of three rice sucrose synthase genesPlant Mol. Biol., 40
-
N. Sreenivasulu, L. Altschmied, R. Panitz, U. Hähnel, W. Michalek, W. Weschke, U. Wobus (2001)
Identification of genes specifically expressed in maternal and filial tissues of barley caryopses: a cDNA array analysisMolecular Genetics and Genomics, 266
-
K. Törmäkangas, J. Kervinen, A. Östman, T. Teeri (1994)
Tissue-specific localization of aspartic proteinase in developing and germinating barley grainsPlanta, 195
-
S. Golombek, H. Rolletschek, U. Wobus, H. Weber (2001)
Control of storage protein accumulation during legume seed developmentFunct. Integr. Genomics, 158
-
A. Fath, P.C. Bethke, R.L. Jones (2001)
Enzymes that scavange reactive oxygen species are down‐regulated prior to gibberellic acid‐induced programmed cell death in barley aleuroneFEBS Lett., 126
-
Jian-ming Lee, Mark Williams, S. Tingey, A. Rafalski (2002)
DNA array profiling of gene expression changes during maize embryo developmentFunctional & Integrative Genomics, 2
-
Y. Amor, C. Haigler, S. Johnson, Melody Wainscott, D. Delmer (1995)
A membrane-associated form of sucrose synthase and its potential role in synthesis of cellulose and callose in plants.Proceedings of the National Academy of Sciences of the United States of America, 92 20
-
H.E. Neuhaus, M. Emes (2000)
Non‐photosynthetic metabolism in plastidsJ. Exp. Bot., 51
-
S. Altschul, Thomas Madden, A. Schäffer, Jinghui Zhang, Zheng Zhang, W. Miller, D. Lipman (1997)
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.Nucleic acids research, 25 17
-
J. Kigel, G. Galili (1995)
Seed Development and GerminationGenome Res.
-
S.A. Ruuska, T. Girke, C. Benning, J.B. Ohlrogge (2002)
Contrapunctual networks of gene expression during Arabidopsis seed fillingJ. Biol. Chem., 14
-
P. Bethke, A. Fath, Russell Jones (2001)
Regulation of viability and cell death by hormones in cereal aleuroneJournal of Plant Physiology, 158
-
T.L. Wang, C.L. Hedley (1993)
Peas: Genetics, Molecular Biology and BiotechnologyPlant J.
-
A.R. Nutbeam, C.M. Duffus (1978)
Oxygen exchange in the pericarp green layer of immature cereal grainsAnnu. Rev. Plant Physiol. Plant Mol. Biol., 62
-
O.‐A. Olsen, R.H. Potter, R. Kalla (1992)
Histo‐differentiation and molecular biology of developing cereal endospermFunct. Integr. Genomics, 2
-
F. Chen, M.R. Foolad (1997)
Molecular organization of a gene in barley which encodes a protein similar to aspartic protease and its specific expression in nucellar cells duringMol. Gen. Genet., 35
-
H. Rolletschek, L. Borisjuk, M. Koschorreck, U. Wobus, H. Weber (2002)
Legume embryos develop in a hypoxic environmentMol. Genet. Genomics, 53
-
O. Olsen, R. Potter, R. Kalla (1992)
Histo-differentiation and molecular biology of developing cereal endospermSeed Science Research, 2
-
R. Goldberg, S. Barker, L. Pérez-Grau (1989)
Regulation of gene expression during plant embryogenesisCell, 56
-
A. Christoffels, R. Miller, W. Hide (1999)
STACK_PACK and STACK (sequence tag alignment and consensus knowledgebase): a novel comprehensive, hierarchical EST clustering and consensus generation and analysis system providing unique insights into the human genomePlant J., 65
-
W. Michalek, W. Weschke, K.‐P. Pleissner, A. Graner (2002)
EST analysis in barley defines a unigene set comprising 4000 genesPlant Physiol., 104
-
W. Weschke, R. Panitz, S. Gubatz, Qing Wang, R. Radchuk, H. Weber, U. Wobus (2003)
The role of invertases and hexose transporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development.The Plant journal : for cell and molecular biology, 33 2
-
E. Beers (1997)
Programmed cell death during plant growth and developmentCell Death and Differentiation, 4
-
P. Bethke, S. Swanson, S. Hillmer, Russell Jones (1998)
From storage compartment to lytic organelle: the metamorphosis of the aleurone protein storage vacuoleAnnals of Botany, 82
-
W. Michalek, W. Weschke, K. Pleissner, A. Graner (2002)
EST analysis in barley defines a unigene set comprising 4,000 genesTheoretical and Applied Genetics, 104
-
M. Kanehisa, S. Goto, S. Kawashima, A. Nakaya (2002)
The KEGG databases at GenomeNetNucleic acids research, 30 1
- Publisher
- Wiley
- Copyright
- Copyright © 2004 Wiley Subscription Services, Inc., A Wiley Company
- ISSN
- 0960-7412
- eISSN
- 1365-313X
- DOI
- 10.1046/j.1365-313X.2003.01981.x
- Publisher site
- See Article on Publisher Site
Abstract
Different aspects of barley grain development have been studied in detail, but a more global analysis of gene expression patterns is still missing. We have employed macro arrays, containing 1184 unique sequences from 1421 barley cDNA fragments, to study gene expression profiles in maternal and filial tissues of developing barley caryopses from fertilization to early storage phase. Principle component analysis (PCA) defined distinct expression networks in the pre‐storage (0, 2, and 4 days after flowering (DAF)) and early storage phase (10 and 12 DAF). During an intermediate phase (6 and 8 DAF), PCA visualizes a dramatic re‐programming of the transcriptional machinery. In maternal tissues, a large set of protein‐mobilizing enzyme mRNAs, together with upregulated lipid‐mobilizing enzyme and downregulated reactive oxygen species (ROS)‐scavenging enzyme genes, suggests mobilization of stored compounds and programmed cell death (PCD). In the filial tissue fraction, a set of genes highly expressed during the pre‐storage phase is involved in growth processes, including cell wall biosynthesis. The data suggest that the necessary UDP‐glucose is provided both by sucrose synthase (isoform 3) and an invertase‐driven pathway. Further, major developmental changes in pathways producing energy are predicted. A bell‐shaped expression profile with a peak during the intermediate phase is characteristic for genes associated with photosynthesis and ATP production. The photosynthesis‐determined increase of ATP concentration could be a prerequisite for the initiation of grain filling, dominated by starch and storage protein synthesis. Storage product accumulation is accompanied by high transcriptional activity of genes involved in glycolysis and fermentation, as well as in the citric acid cycle.
Journal
The Plant Journal – Wiley
Published: Feb 1, 2004
Keywords: ; ; ; ; ;