Access the full text.
Sign up today, get DeepDyve free for 14 days.
J. Shultz, S. Kazi, R. Bashir, J. Afzal, D. Lightfoot (2007)
The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybeanTheoretical and Applied Genetics, 114
G. Blanc, A. Barakat, R. Guyot, R. Cooke, M. Delseny (2000)
Extensive Duplication and Reshuffling in the Arabidopsis GenomePlant Cell, 12
E. Datema, L. Mueller, Robert Buels, J. Giovannoni, R. Visser, W. Stiekema, R. Ham (2008)
Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potatoBMC Plant Biology, 8
J. Frelichowski, Michael Palmer, D. Main, J. Tomkins, R. Cantrell, D. Stelly, John Yu, R. Kohel, M. Ulloa (2006)
Cotton genome mapping with new microsatellites from Acala ‘Maxxa’ BAC-endsMolecular Genetics and Genomics, 275
C. Lai, Qingyi Yu, S. Hou, Rachel Skelton, Meghan Jones, Kanako Lewis, Jan Murray, M. Eustice, Peizhu Guan, R. Agbayani, P. Moore, R. Ming, G. Presting (2006)
Analysis of papaya BAC end sequences reveals first insights into the organization of a fruit tree genomeMolecular Genetics and Genomics, 276
A. Cenci, M. Combes, P. Lashermes (2011)
Genome evolution in diploid and tetraploid Coffea species as revealed by comparative analysis of orthologous genome segmentsPlant Molecular Biology, 78
R. Guyot, Florent Lefebvre-Pautigny, Christine Tranchant-Dubreuil, Michel Rigoreau, P. Hamon, T. Leroy, S. Hamon, V. Poncet, D. Crouzillat, A. Kochko (2012)
Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) cladesBMC Genomics, 13
C. Feuillet, J. Leach, J. Rogers, P. Schnable, K. Eversole (2011)
Crop genome sequencing: lessons and rationales.Trends in plant science, 16 2
T. Berardini, S. Mundodi, L. Reiser, E. Huala, M. Garcia-Hernandez, Peifen Zhang, L. Mueller, J. Yoon, Aisling Doyle, Gabriel Lander, N. Moseyko, Danny Yoo, Iris Xu, Brandon Zoeckler, Mary Montoya, Neil Miller, D. Weems, S. Rhee (2004)
Functional Annotation of the Arabidopsis Genome Using Controlled Vocabularies1Plant Physiology, 135
R. Jansen, C. Kaittanis, C. Saski, Seung-Bum Lee, J. Tomkins, A. Alverson, H. Daniell (2006)
Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosidsBMC Evolutionary Biology, 6
E. Paux, D. Roger, E. Badaeva, G. Gay, M. Bernard, P. Sourdille, C. Feuillet (2006)
Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B.The Plant journal : for cell and molecular biology, 48 3
F. Cheung, C. Town (2007)
A BAC end view of the Musa acuminata genomeBMC Plant Biology, 7
J. Ammiraju, Meizhong Luo, J. Goicoechea, Wenming Wang, D. Kudrna, Christopher Mueller, J. Talag, J. Talag, Hyeran Kim, Nicholas Sisneros, B. Blackmon, E. Fang, Jeffery Tomkins, D. Brar, D. Mackill, S. McCouch, N. Kurata, G. Lambert, D. Galbraith, K. Arumuganathan, K. Rao, J. Walling, N. Gill, Yeisoo Yu, P. SanMiguel, C. Soderlund, S. Jackson, R. Wing (2005)
The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza.Genome research, 16 1
M. Noirot, V. Poncet, P. Barre, P. Hamon, S. Hamon, A. Kochko (2003)
Genome size variations in diploid African Coffea species.Annals of botany, 92 5
A. Cenci, M. Combes, P. Lashermes (2013)
Differences in evolution rates among eudicotyledon species observed by analysis of protein divergence.The Journal of heredity, 104 4
C. Hong, P. Plaha, D. Koo, Tae-Jin Yang, S. Choi, Young Lee, Taesik Uhm, J. Bang, D. Edwards, I. Bancroft, Beom-Seok Park, Jungho Lee, Y. Lim (2006)
A Survey of the Brassica rapa genome by BAC-end sequence analysis and comparison with Arabidopsis thaliana.Molecules and cells, 22 3
P. Lashermes, E. Couturon, A. Charrier (2004)
Doubled haploids of Coffea canephora: development, fertility and agronomic characteristicsEuphytica, 74
Xiaomao Cheng, Jinsong Xu, Shu Xia, Jianxun Gu, Yuan Yang, Jie Fu, X. Qian, Shunchang Zhang, Jiangsheng Wu, Kede Liu (2009)
Development and genetic mapping of microsatellite markers from genome survey sequences in Brassica napusTheoretical and Applied Genetics, 118
M. Febrer, F. Cheung, C. Town, S. Cannon, N. Young, M. Abberton, G. Jenkins, D. Milbourne (2007)
Construction, characterization, and preliminary BAC-end sequencing analysis of a bacterial artificial chromosome library of white clover (Trifolium repens L.).Genome, 50 4
J. Jurka, V. Kapitonov, A. Pavlícek, P. Klonowski, O. Kohany, J. Walichiewicz (2005)
Repbase Update, a database of eukaryotic repetitive elementsCytogenetic and Genome Research, 110
A. Cenci, M. Combes, P. Lashermes (2010)
Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genomeMolecular Genetics and Genomics, 283
C. Hong, S. Lee, J. Park, P. Plaha, Y. Park, Y. Lee, J. Choi, K. Kim, J. Lee, Joon Lee, H. Jin, S. Choi, Y. Lim (2004)
Construction of a BAC library of Korean ginseng and initial analysis of BAC-end sequencesMolecular Genetics and Genomics, 271
V. Poncet, Myriam Rondeau, C. Tranchant, A. Cayrel, S. Hamon, A. Kochko, P. Hamon (2006)
SSR mining in coffee tree EST databases: potential use of EST–SSRs as markers for the Coffea genusMolecular Genetics and Genomics, 276
Shusei Sato, S. Tabata, H. Hirakawa, E. Asamizu, K. Shirasawa, S. Isobe, T. Kaneko, Yasukazu Nakamura, D. Shibata, K. Aoki, M. Egholm, James Knight, R. Bogden, Changbao Li, Yang Shuang, Xun Xu, S. Pan, Shifeng Cheng, Xin Liu, Yuanyuan Ren, Jun Wang, A. Albiero, F. Pero, S. Todesco, J. Eck, Robert Buels, A. Bombarely, J. Gosselin, Minyun Huang, J. Leto, Naama Menda, S. Strickler, Linyong Mao, Shan Gao, I. Tecle, T. York, Yi Zheng, J. Vrebalov, Je Lee, S. Zhong, L. Mueller, W. Stiekema, Paolo Ribeca, T. Alioto, Wencai Yang, Sanwen Huang, Yong-chen Du, Zhonghua Zhang, Jianchang Gao, Yan-mei Guo, Xiaoxuan Wang, Ying Li, Jun He, Chuanyou Li, Zhukuan Cheng, Jianru Zuo, Jianfeng Ren, Jiuhai Zhao, Liuhua Yan, Hongling Jiang, Baoliang Wang, Hongshuang Li, Zhen-jun Li, F. Fu, Bingtang Chen, B. Han, Qi Feng, Danlin Fan, Ying Wang, H. Ling, Yongbiao Xue, D. Ware, W. McCombie, Z. Lippman, Jer-Ming Chia, K. Jiang, S. Pasternak, Laura Gelley, M. Kramer, L. Anderson, Song-Bin Chang, S. Royer, L. Shearer, S. Stack, J. Rose, Yimin Xu, N. Eannetta, A. Matas, R. McQuinn, S. Tanksley, F. Camara, R. Guigó, S. Rombauts, Jeffrey Fawcett, Y. Peer, D. Zamir, Chunbo Liang, M. Spannagl, H. Gundlach, R. Bruggmann, K. Mayer, Zhiqi Jia, Junhong Zhang, Z. Ye, G. Bishop, S. Butcher, Rosa Lopez-Cobollo, Daniel Buchan, Ioannis Filippis, J. Abbott, Rekha Dixit, Manju Singh, Archana Singh, J. Pal, A. Pandit, Pradeep Singh, A. Mahato, V. Dogra, K. Gaikwad, T. Sharma, T. Mohapatra, N. Singh, M. Causse, C. Rothan, T. Schiex, Céline Noirot, A. Bellec, C. Klopp, C. Delalande, H. Bergès, J. Mariette, P. Frasse, S. Vautrin, M. Zouine, A. Latché, C. Rousseau, F. Regad, J. Pech, Murielle Philippot, M. Bouzayen, Pierre Pericard, Sonia Osorio, A. Carmen, A. Monforte, A. Granell, R. Fernández-Muñoz, Mariana Conte, G. Lichtenstein, F. Carrari, G. Bellis, F. Fuligni, C. Peano, S. Grandillo, Pasquale Termolino, M. Pietrella, Elio Fantini, G. Falcone, A. Fiore, G. Giuliano, L. Lopez, Paolo Facella, G. Perrotta, Loretta Daddiego, G. Bryan, M. Orozco, X. Pastor, D. Torrents, Keygene Schriek, R. Feron, Jan Oeveren, P. Heer, Lorena daPonte, Saskia Jacobs-Oomen, M. Cariaso, M. Prins, M. Eijk, A. Janssen, M. Haaren, Sung-Hwan Jo, Jungeun Kim, Suk-Yoon. Kwon, Sangmi Kim, D. Koo, Sanghyeob Lee, Cheol-Goo Hur, Chris Clouser, A. Rico, A. Hallab, C. Gebhardt, K. Klee, Anika Joecker, J. Warfsmann, U. Goebel, S. Kawamura, K. Yano, J. Sherman, H. Fukuoka, Satomi Negoro, Sarita Bhutty, Parul Chowdhury, D. Chattopadhyay, E. Datema, S. Smit, E. Schijlen, J. Belt, J. Haarst, S. Peters, M. Staveren, M. Henkens, P. Mooyman, T. Hesselink, R. Ham, Guoyong Jiang, M. Droege, D. Choi, B. Kang, Byung-Dong Kim, Minkyu Park, Seungill Kim, Seon-In Yeom, Yong-Hwan Lee, Y. Choi, Guangcun Li, Jianwei Gao, Yongsheng Liu, Shengxiong Huang, V. Fernández-Pedrosa, Carmen Collado, S. Zuniga, Guoping Wang, R. Cade, R. Dietrich, J. Rogers, S. Knapp, Z. Fei, Ruth White, T. Thannhauser, J. Giovannoni, M. Botella, Louise Gilbert, R. González, J. Goicoechea, Yeisoo Yu, D. Kudrna, K. Collura, Marina Wissotski, R. Wing, H. Schoof, B. Meyers, Aishwarya Gurazada, P. Green, S. Mathur, S. Vyas, A. Solanke, Rahul Kumar, Vikrant Gupta, A. Sharma, P. Khurana, J. Khurana, A. Tyagi, T. Dalmay, I. Mohorianu, Brandon Walts, S. Chamala, W. Barbazuk, Jingping Li, Hui Guo, Tae-Ho Lee, Yupeng Wang, Dong Zhang, A. Paterson, Xiyin Wang, Haibao Tang, A. Barone, M. Chiusano, M. Ercolano, N. D’Agostino, M. Filippo, Alessandra Traini, W. Sanseverino, L. Frusciante, G. Seymour, Mounir Elharam, Ying Fu, A. Hua, S. Kenton, J. Lewis, S. Lin, F. Najar, H. Lai, B. Qin, Chunmei Qu, Ruihua Shi, Doug White, James White, Yanbo Xing, Keqin Yang, Jing Yi, Ziyun Yao, Liping Zhou, B. Roe, A. Vezzi, M. Dangelo, R. Zimbello, Riccardo Schiavon, E. Caniato, Chiara Rigobello, D. Campagna, N. Vitulo, G. Valle, D. Nelson, E. Paoli, D. Szinay, H. Jong, Yuling Bai, R. Visser, R. Lankhorst, H. Beasley, K. McLaren, C. Nicholson, C. Riddle, G. Gianese (2012)
The tomato genome sequence provides insights into fleshy fruit evolutionNature, 485
Florent Lefebvre-Pautigny, Feinan Wu, Murielle Philippot, Murielle Philippot, Michel Rigoreau, Priyono, M. Zouine, M. Zouine, P. Frasse, P. Frasse, M. Bouzayen, M. Bouzayen, P. Broun, V. Pétiard, S. Tanksley, D. Crouzillat (2010)
High resolution synteny maps allowing direct comparisons between the coffee and tomato genomesTree Genetics & Genomes, 6
(1982)
Présentation d'une méthode de récupération d'haploıhaploı¨de spontanés découverts chez le Coffea canephora var. robusta
N. Wikström, V. Savolainen, M. Chase (2001)
Evolution of the angiosperms: calibrating the family treeProceedings of the Royal Society of London. Series B: Biological Sciences, 268
J. Messing, A. Bharti, W. Karłowski, H. Gundlach, Hyeran Kim, Yeisoo Yu, Fusheng Wei, Galina Fuks, C. Soderlund, K. Mayer, R. Wing (2004)
Sequence composition and genome organization of maize.Proceedings of the National Academy of Sciences of the United States of America, 101 40
P. Cavagnaro, Sang-Min Chung, M. Szklarczyk, D. Grzebelus, D. Senalik, A. Atkins, P. Simon (2009)
Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequencesMolecular Genetics and Genomics, 281
SS Jetty, M Luo, J Goicoechea, W Wang, D Kudrna, C Mueller, J Talag, H Kim, N Sisneros, B Blackmon, E Fang, J Tomkins, D Brar, D MacKil, S McCouch, N Kurata, G Lambert, G Galbraith, K Arumuganathan, R Rao, J Walling, N Gill, Y Yu, P SanMiguel, C Soderlund, S Jackson, R Wing (2006)
The Oryza BAC library resource: construction and analysis of 12 deep-coverage large-insert BAC librariesGenome Res, 16
Jun Yu, Songnian Hu, Jun Wang, G. Wong, Songgang Li, Bin Liu, Yajun Deng, L. Dai, Yan Zhou, Xiuqing Zhang, Mengliang Cao, Jing Liu, Jiandong Sun, Jiabin Tang, Yanjiong Chen, Xiaobing Huang, Wei Lin, C. Ye, W. Tong, Lijuan Cong, Jianing Geng, Yujun Han, Lin Li, Wei Li, G. Hu, Xiangang Huang, Wenjie Li, Jian Li, Zhanwei Liu, Long Li, Jianping Liu, Q. Qi, Jinsong Liu, Li Li, Tao Li, Xuegang Wang, Hong Lu, Tingting Wu, Miao Zhu, Peixiang Ni, Hua Han, Wei Dong, Xiaoyu Ren, Xiaoli Feng, P. Cui, Xianran Li, Hao Wang, Xin Xu, W. Zhai, Zhao Xu, Jinsong Zhang, Sijie He, Jianguo Zhang, Jichen Xu, Kunlin Zhang, Xianwu Zheng, Jianhai Dong, Wanyong Zeng, Lin Tao, Jia Ye, Jun Tan, Xide Ren, Xuewei Chen, Jun He, Daofeng Liu, W. Tian, Chaoguang Tian, Hong’ai Xia, Qiyu Bao, Gang Li, Hui Gao, Ting Cao, Juan Wang, Wenming Zhao, Ping Li, Wei Chen, Xudong Wang, Yong Zhang, Jian-Fei Hu, Jing Wang, Song Liu, Jian Yang, Guangyu Zhang, Yuqing Xiong, Zhijie Li, Long Mao, Chengshu Zhou, Zhen Zhu, Runsheng Chen, Bailin Hao, Wei-Mou Zheng, S. Chen, W. Guo, Guojie Li, Siqi Liu, M. Tao, Jian Wang, Lihuang Zhu, Longping Yuan, Huanming Yang (2002)
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)Science, 296
Chia-Chi Hsu, Y. Chung, Tien-Chih Chen, Yu-ling Lee, Y. Kuo, W. Tsai, Yu-Yun Hsiao, Y. Chen, W. Wu, Hong-Hwa Chen (2011)
An overview of the Phalaenopsis orchid genome through BAC end sequence analysisBMC Plant Biology, 11
The Initiative (2000)
Analysis of the genome sequence of the flowering plant Arabidopsis thalianaNature, 408
G. Pertea, Xiaoqiu Huang, F. Liang, Valentin Antonescu, R. Sultana, S. Karamycheva, Yuandan Lee, Joseph White, F. Cheung, Babak Parvizi, J. Tsai, John Quackenbush (2003)
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasetsBioinformatics, 19 5
(2013)
Plant Mol Biol
R. Guyot, Marion Mare, Véronique Viader, P. Hamon, Olivier Coriton, José Bustamante-Porras, V. Poncet, C. Campa, Serge Hamon, A. Kochko (2009)
Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomesBMC Plant Biology, 9
S. Altschul, Thomas Madden, A. Schäffer, Jinghui Zhang, Zheng Zhang, W. Miller, D. Lipman (1997)
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.Nucleic acids research, 25 17
E Robbrecht, JF Manen (2006)
The major evolutionary lineages of the coffee family (Rubiaceae, angiosperms). Combined analysis (nDNA and cpDNA) to infer the position of Coptosapelta and Luculia, and supertree construction based on rbcl, rps16, trnL-trnF and atpB-rbcL data. A new classification in two subfamilies, Cinchonoideae and RubioideaeSyst Geogr, 76
A. Davis, J. Tosh, Nicolas Ruch, M. Fay (2011)
Growing coffee: Psilanthus (Rubiaceae) subsumed on the basis of molecular and morphological data; implications for the size, morphology, distribution and evolutionary history of CoffeaBotanical Journal of the Linnean Society, 167
Long Mao, T. Wood, Yeisoo Yu, M. Budiman, Jeffery Tomkins, S. Woo, S. Woo, M. Sasinowski, G. Presting, D. Frisch, S. Goff, R. Dean, R. Dean, R. Wing (2000)
Rice transposable elements: a survey of 73,000 sequence-tagged-connectors.Genome research, 10 7
V. Poncet, M. Dufour, P. Hamon, S. Hamon, A. Kochko, T. Leroy (2007)
Development of genomic microsatellite markers in Coffea canephora and their transferability to other coffee species.Genome, 50 12
A. Conesa, Stefan Götz (2007)
Blast2GO: A Comprehensive Suite for Functional Analysis in Plant GenomicsInternational Journal of Plant Genomics, 2008
Xiaoqiu Huang, A. Madan (1999)
CAP3: A DNA sequence assembly program.Genome research, 9 9
L. Mahé, M. Combes, P. Lashermes (2007)
Comparison between a coffee single copy chromosomal region and Arabidopsis duplicated counterparts evidenced high level synteny between the coffee genome and the ancestral Arabidopsis genomePlant Molecular Biology, 64
O. Kohany, A. Gentles, Lukasz Hankus, J. Jurka (2006)
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and CensorBMC Bioinformatics, 7
O. Jaillon, J. Aury, Benjamin Noel, A. Policriti, C. Clépet, A. Casagrande, N. Choisne, S. Aubourg, N. Vitulo, Claire Jubin, A. Vezzi, F. Legeai, P. Hugueney, C. Dasilva, D. Horner, E. Mica, D. Jublot, J. Poulain, Clémence Bruyère, A. Billault, Béatrice Segurens, M. Gouyvenoux, Edgardo Ugarte, F. Cattonaro, Véronique Anthouard, V. Vico, Cristian Fabbro, M. Alaux, G. Gaspero, V. Dumas, Nicoletta Felice, S. Paillard, Irena Juman, M. Moroldo, S. Scalabrin, Aurélie Canaguier, I. Clainche, G. Malacrida, E. Durand, G. Pesole, V. Laucou, P. Chatelet, D. Merdinoglu, M. Delledonne, M. Pezzotti, A. Lecharny, C. Scarpelli, F. Artiguenave, M. Pè, G. Valle, M. Morgante, M. Caboche, A. Adam-Blondon, J. Weissenbach, F. Quétier, P. Wincker (2007)
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phylaNature, 449
S. Goff, D. Ricke, T. Lan, G. Presting, Ronglin Wang, Molly Dunn, J. Glazebrook, A. Sessions, P. Oeller, H. Varma, D. Hadley, Don Hutchison, Christopher Martin, F. Katagiri, B. Lange, Todd Moughamer, Yumei Xia, P. Budworth, Jingping Zhong, Trini Miguel, U. Paszkowski, Shiping Zhang, M. Colbert, Wei-lin Sun, Lili Chen, B. Cooper, Sylvia Park, T. Wood, Long Mao, P. Quail, R. Wing, R. Dean, Yeisoo Yu, A. Zharkikh, Richard Shen, S. Sahasrabudhe, Alun Thomas, R. Cannings, A. Gutin, D. Pruss, J. Reid, S. Tavtigian, Jeff Mitchell, G. Eldredge, T. Scholl, R. Miller, Satish Bhatnagar, N. Adey, T. Rubano, N. Tusneem, Rosann Robinson, Jane Feldhaus, T. Macalma, A. Oliphant, S. Briggs (2002)
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).Science, 296 5565
Bmc Genomics, J. Terol, M. Naranjo, P. Ollitrault, M. Talón (2008)
Development of genomic resources for Citrus clementina: Characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequencesBMC Genomics, 9
Yuepeng Han, S. Korban (2008)
An overview of the apple genome through BAC end sequence analysisPlant Molecular Biology, 67
N. Huo, G. Lazo, J. Vogel, F. You, Yaqin Ma, D. Hayden, Devin Coleman-Derr, T. Hill, J. Dvorak, O. Anderson, M. Luo, Y. Gu (2008)
The nuclear genome of Brachypodium distachyon: analysis of BAC end sequencesFunctional & Integrative Genomics, 8
P. Gupta, Yunbi Xu (2009)
Genomics of Major Crops and Model Plant SpeciesInternational Journal of Plant Genomics, 2008
R. Vidal, J. Mondego, D. Pot, A. Ambrósio, A. Andrade, L. Pereira, C. Colombo, L. Vieira, M. Carazzolle, G. Pereira (2010)
A High-Throughput Data Mining of Single Nucleotide Polymorphisms in Coffea Species Expressed Sequence Tags Suggests Differential Homeologous Gene Expression in the Allotetraploid Coffea arabica1[W]Plant Physiology, 154
Coffee is one of the world’s most important agricultural commodities. Coffee belongs to the Rubiaceae family in the euasterid I clade of dicotyledonous plants, to which the Solanaceae family also belongs. Two bacterial artificial chromosome (BAC) libraries of a homozygous doubled haploid plant of Coffea canephora were constructed using two enzymes, HindIII and BstYI. A total of 134,827 high quality BAC-end sequences (BESs) were generated from the 73,728 clones of the two libraries, and 131,412 BESs were conserved for further analysis after elimination of chloroplast and mitochondrial sequences. This corresponded to almost 13 % of the estimated size of the C. canephora genome. 6.7 % of BESs contained simple sequence repeats, the most abundant (47.8 %) being mononucleotide motifs. These sequences allow the development of numerous useful marker sites. Potential transposable elements (TEs) represented 11.9 % of the full length BESs. A difference was observed between the BstYI and HindIII libraries (14.9 vs. 8.8 %). Analysis of BESs against known coding sequences of TEs indicated that 11.9 % of the genome corresponded to known repeat sequences, like for other flowering plants. The number of genes in the coffee genome was estimated at 41,973 which is probably overestimated. Comparative genome mapping revealed that microsynteny was higher between coffee and grapevine than between coffee and tomato or Arabidopsis. BESs constitute valuable resources for the first genome wide survey of coffee and provide new insights into the composition and evolution of the coffee genome.
Plant Molecular Biology – Springer Journals
Published: May 25, 2013
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.