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Camel heavy‐chain antibodies: diverse germline VHH and specific mechanisms enlarge the antigen‐binding repertoire

Camel heavy‐chain antibodies: diverse germline VHH and specific mechanisms enlarge the... The antigen‐binding site of the camel heavy‐chain antibodies devoid of light chain consists of a single variable domain (VHH) that obviously lacks the VH–VL combinatorial diversity. To evaluate the extent of the VHH antigen‐binding repertoire, a germline database was constructed from PCR‐amplified VHH/VH segments of a single specimen of Camelus dromedarius. A total of 33 VHH and 39 VH unique sequences were identified, encoded by 42 and 50 different genes, respectively. Sequence comparison indicates that the VHHs evolved within the VH subgroup III. Nevertheless, the VHH germline segments are highly diverse, leading to a broad structural repertoire of the antigen‐binding loops. Seven VHH subfamilies were recognized, of which five were confirmed to be expressed in vivo. Comparison of germline and cDNA sequences demonstrates that the rearranged VHHs are extensively diversified by somatic mutation processes, leading to an additional hypervariable region and a high incidence of nucleotide insertions or deletions. These diversification processes are driven by hypermutation and recombination hotspots embedded in the VHH germline genes at the regions affecting the structure of the antigen‐binding loops. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png The EMBO Journal Wiley

Camel heavy‐chain antibodies: diverse germline VHH and specific mechanisms enlarge the antigen‐binding repertoire

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References (81)

Publisher
Wiley
Copyright
Copyright © 2013 Wiley Periodicals, Inc
ISSN
0261-4189
eISSN
1460-2075
DOI
10.1093/emboj/19.5.921
pmid
10698934
Publisher site
See Article on Publisher Site

Abstract

The antigen‐binding site of the camel heavy‐chain antibodies devoid of light chain consists of a single variable domain (VHH) that obviously lacks the VH–VL combinatorial diversity. To evaluate the extent of the VHH antigen‐binding repertoire, a germline database was constructed from PCR‐amplified VHH/VH segments of a single specimen of Camelus dromedarius. A total of 33 VHH and 39 VH unique sequences were identified, encoded by 42 and 50 different genes, respectively. Sequence comparison indicates that the VHHs evolved within the VH subgroup III. Nevertheless, the VHH germline segments are highly diverse, leading to a broad structural repertoire of the antigen‐binding loops. Seven VHH subfamilies were recognized, of which five were confirmed to be expressed in vivo. Comparison of germline and cDNA sequences demonstrates that the rearranged VHHs are extensively diversified by somatic mutation processes, leading to an additional hypervariable region and a high incidence of nucleotide insertions or deletions. These diversification processes are driven by hypermutation and recombination hotspots embedded in the VHH germline genes at the regions affecting the structure of the antigen‐binding loops.

Journal

The EMBO Journal – Wiley

Published: Jan 1, 2000

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