Access the full text.
Sign up today, get DeepDyve free for 14 days.
L. Palmer, P. Rabinowicz, A. O'Shaughnessy, Vivekanand Balija, Lidia Nascimento, S. Dike, M. Bastide, R. Martienssen, W. McCombie (2003)
Maize Genome Sequencing by Methylation FiltrationScience, 302
J. Fernandes, Qunfeng Dong, Bret Schneider, Darren Morrow, Guo-Ling Nan, V. Brendel, V. Walbot (2004)
Genome-wide mutagenesis of Zea mays L. using RescueMu transposonsGenome Biology, 5
Katica Ilic, P. SanMiguel, J. Bennetzen (2003)
A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomesProceedings of the National Academy of Sciences of the United States of America, 100
L. Granger, Edwige Martin, L. Ségalat (2004)
Mos as a tool for genome-wide insertional mutagenesis in Caenorhabditis elegans: results of a pilot study.Nucleic acids research, 32 14
B. Gaut (2001)
Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses.Genome research, 11 1
B. Meyers, S. Tingey, M. Morgante (2001)
Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome.Genome research, 11 10
A. Cresse, S. Hulbert, W. Brown, J. Lucas, J. Bennetzen (1995)
Mu1-related transposable elements of maize preferentially insert into low copy number DNA.Genetics, 140 1
B. Gaut, J. Doebley (1997)
DNA sequence evidence for the segmental allotetraploid origin of maize.Proceedings of the National Academy of Sciences of the United States of America, 94 13
Nathan Springer, Xiequn Xu, Brad Barbazuk (2004)
Utility of Different Gene Enrichment Approaches Toward Identifying and Sequencing the Maize Gene Space1[w]Plant Physiology, 136
J. Fernandes, V. Brendel, X. Gai, S. Lal, V. Chandler, R. Elumalai, D. Galbraith, E. Pierson, V. Walbot (2002)
Comparison of RNA Expression Profiles Based on Maize Expressed Sequence Tag Frequency Analysis and Micro-Array Hybridization1Plant Physiology, 128
R. Gibbs, G. Weinstock, M. Metzker, D. Muzny, E. Sodergren, S. Scherer, Graham Scott, David Steffen, K. Worley, P. Burch, Geoffrey Okwuonu, S. Hines, L. Lewis, Christine DeRamo, O. Delgado, S. Dugan-Rocha, George Miner, M. Morgan, A. Hawes, Rachel Gill, Celera, R. Holt, M. Adams, P. Amanatides, Holly Baden-Tillson, Mary Barnstead, Soo Chin, C. Evans, S. Ferriera, C. Fosler, A. Glodek, Z. Gu, Donald Jennings, C. Kraft, T. Nguyen, C. Pfannkoch, Cynthia Sitter, G. Sutton, J. Venter, T. Woodage, Douglas Smith, H. Lee, E. Gustafson, P. Cahill, A. Kana, L. Doucette-Stamm, K. Weinstock, K. Fechtel, R. Weiss, D. Dunn, E. Green, R. Blakesley, G. Bouffard, P. Jong, K. Osoegawa, B. Zhu, M. Marra, J. Schein, I. Bosdet, C. Fjell, Steven Jones, M. Krzywinski, Carrie Mathewson, A. Siddiqui, N. Wye, J. McPherson, Shaying Zhao, C. Fraser, Jyoti Shetty, S. Shatsman, Keita Geer, Yixin Chen, Sofyia Abramzon, W. Nierman, P. Havlak, Rui Chen, K. Durbin, Amy Egan, Yanru Ren, Xing-Zhi Song, Bingshan Li, Yue Liu, X. Qin, S. Cawley, A. Cooney, Lisa D'Souza, Kirt Martin, Jia Wu, M. Gonzalez-Garay, Andrew Jackson, Ken Kalafus, M. McLeod, A. Milosavljevic, D. Virk, A. Volkov, D. Wheeler, Zhengdong Zhang, J. Bailey, E. Eichler, Eray Tuzun, E. Birney, Emmanuel Mongin, A. Ureta-Vidal, Cara Woodwark, E. Zdobnov, P. Bork, M. Suyama, D. Torrents, M. Alexandersson, B. Trask, Janet Young, Hui Huang, Huajun Wang, Heming Xing, Sue Daniels, D. Gietzen, Jeanette Schmidt, Kristian Stevens, U. Vitt, J. Wingrove, F. Camara, M. Albà, J. Abril, R. Guigó, A. Smit, I. Dubchak, E. Rubin, O. Couronne, Alexander Poliakov, N. Hübner, D. Ganten, Claudia Goesele, O. Hummel, T. Kreitler, Young-Ae Lee, J. Monti, H. Schulz, H. Zimdahl, H. Himmelbauer, H. Lehrach, H. Jacob, Susan Bromberg, J. Gullings-Handley, M. Jensen-Seaman, A. Kwitek, Jozef Lazar, D. Pasko, P. Tonellato, S. Twigger, C. Ponting, José Duarte, S. Rice, L. Goodstadt, S. Beatson, Richard Emes, E. Winter, C. Webber, P. Brandt, G. Nyakatura, Margaret Adetobi, F. Chiaromonte, L. Elnitski, P. Eswara, R. Hardison, Minmei Hou, D. Kolbe, K. Makova, W. Miller, A. Nekrutenko, C. Riemer, S. Schwartz, James Taylor, Shan Yang, Yi Zhang, K. Lindpaintner, T. Andrews, M. Cáccamo, M. Clamp, Laura Clarke, V. Curwen, R. Durbin, E. Eyras, S. Searle, G. Cooper, S. Batzoglou, M. Brudno, A. Sidow, Eric Stone, B. Payseur, G. Bourque, C. López-Otín, X. Puente, Kushal Chakrabarti, Sourav Chatterji, Colin Dewey, L. Pachter, Nicolas Bray, V. Yap, A. Caspi, G. Tesler, P. Pevzner, D. Haussler, K. Roskin, R. Baertsch, H. Clawson, T. Furey, A. Hinrichs, D. Karolchik, W. Kent, K. Rosenbloom, Heather Trumbower, M. Weirauch, D. Cooper, P. Stenson, Bin Ma, M. Brent, Manimozhiyan Arumugam, David Shteynberg, R. Copley, Martin Taylor, H. Riethman, U. Mudunuri, Jane Peterson, M. Guyer, A. Felsenfeld, S. Old, Stephen Mockrin, F. Collins (2004)
Genome sequence of the Brown Norway rat yields insights into mammalian evolutionNature, 428
B. Gaut (2000)
Sawkins, Maize as a model for evolution of plant nuclear genomes, 97
J. Wortman, B. Haas, L. Hannick, R. Smith, R. Maiti, C. Ronning, A. Chan, Chun-Wei Yu, M. Ayele, C. Whitelaw, O. White, C. Town (2003)
Annotation of the Arabidopsis Genome1Plant Physiology, 132
M. Raizada (2003)
RescueMu protocols for maize functional genomics.Methods in molecular biology, 236
Yinan Yuan, P. SanMiguel, J. Bennetzen (2003)
High-Cot sequence analysis of the maize genome.The Plant journal : for cell and molecular biology, 34 2
J. Bedell, M. Budiman, A. Nunberg, Robert Citek, D. Robbins, Joshua Jones, E. Flick, T. Rohlfing, Jason Fries, Kourtney Bradford, Jennifer McMenamy, Michael Smith, Heather Holeman, B. Roe, G. Wiley, I. Korf, P. Rabinowicz, N. Lakey, W. McCombie, J. Jeddeloh, R. Martienssen (2005)
Sorghum Genome Sequencing by Methylation FiltrationPLoS Biology, 3
J. Bennetzen (1998)
The evolution of grass genome organisation and function.Symposia of the Society for Experimental Biology, 51
K. Cone, M. McMullen, I. Bi, G. Davis, Y. Yim, J. Gardiner, M. Polacco, Hector Sanchez-Villeda, Zhiwei Fang, Steven Schroeder, Seth Havermann, J. Bowers, A. Paterson, C. Soderlund, Fred Engler, R. Wing, E. Coe (2002)
Genetic, Physical, and Informatics Resources for Maize. On the Road to an Integrated Map1Plant Physiology, 130
M. Raizada, Guo-Ling Nan, V. Walbot (2001)
Somatic and Germinal Mobility of the RescueMu Transposon in Transgenic MaizeThe Plant Cell Online, 13
S. Emrich, S. Aluru, Yan Fu, Tsui-Jung Wen, Mahesh Narayanan, Ling Guo, D. Ashlock, P. Schnable (2004)
A strategy for assembling the maize (Zea mays L.) genomeBioinformatics, 20 2
R. Langham, J. Walsh, Molly Dunn, Cynthia Ko, S. Goff, M. Freeling (2004)
Genomic duplication, fractionation and the origin of regulatory novelty.Genetics, 166 2
D. Mccormick (1986)
Sequence the Human GenomeBio/Technology, 4
Yan Fu, An-Ping Hsia, Ling Guo, P. Schnable (2004)
Types and Frequencies of Sequencing Errors in Methyl-Filtered and High C0t Maize Genome Survey Sequences1[w]Plant Physiology, 135
G. Sutton, O. White, M. Adams, A. Kerlavage (1995)
TIGR Assembler: A New Tool for Assembling Large Shotgun Sequencing Projects, 1
J. Berg (1998)
Genome sequence of the nematode C. elegans: a platform for investigating biology.Science, 282 5396
R. Martienssen, P. Rabinowicz, Andrew 'shaughnessy, W. McCombie, Joseph Ecker, Doug Cook (2004)
Sequencing the maize genome.Current opinion in plant biology, 7 2
P. Rabinowicz, Kristin Schutz, N. Dedhia, C. Yordán, L. Parnell, L. Stein, W. McCombie, R. Martienssen (1999)
Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genomeNature Genetics, 23
R. Song, J. Messing (2003)
Gene expression of a gene family in maize based on noncollinear haplotypesProceedings of the National Academy of Sciences of the United States of America, 100
Mouse Consortium (2002)
Initial sequencing and comparative analysis of the mouse genomeNature, 420
C. Whitelaw, W. Barbazuk, G. Pertea, A. Chan, F. Cheung, Y. Lee, L. Zheng, S. Heeringen, S. Karamycheva, J. Bennetzen, P. SanMiguel, N. Lakey, J. Bedell, Y. Yuan, M. Budiman, A. Resnick, S. Aken, T. Utterback, S. Riedmuller, M. Williams, T. Feldblyum, K. Schubert, R. Beachy, C. Fraser, John Quackenbush (2003)
Enrichment of Gene-Coding Sequences in Maize by Genome FiltrationScience, 302
D. Peterson, S. Wessler, A. Paterson (2002)
Efficient capture of unique sequences from eukaryotic genomes.Trends in genetics : TIG, 18 11
Zuzana Swigoňová, Jinsheng Lai, Jianxin Ma, W. Ramakrishna, V. Llaca, J. Bennetzen, J. Messing (2004)
Close split of sorghum and maize genome progenitors.Genome research, 14 10A
B. Gaut, M. d'Ennequin, A. Peek, M. Sawkins (2000)
Maize as a model for the evolution of plant nuclear genomes.Proceedings of the National Academy of Sciences of the United States of America, 97 13
T. Imanishi, T. Itoh, Yutaka Suzuki, C. O’Donovan, S. Fukuchi, Kanako Koyanagi, R. Barrero, Takuro Tamura, Y. Yamaguchi-Kabata, M. Tanino, K. Yura, S. Miyazaki, K. Ikeo, Keiichi Homma, A. Kasprzyk, T. Nishikawa, M. Hirakawa, J. Thierry-Mieg, D. Thierry-Mieg, J. Ashurst, L. Jia, Mitsuteru Nakao, Michael Thomas, N. Mulder, Youla Karavidopoulou, Lihua Jin, Sangsoo Kim, Tomohiro Yasuda, B. Lenhard, E. Eveno, Yoshiyuki Suzuki, Chisato Yamasaki, Jun-ichi Takeda, C. Gough, Phillip Hilton, Yasuyuki Fujii, H. Sakai, Susumu Tanaka, C. Amid, M. Bellgard, M. Bonaldo, H. Bono, Susan Bromberg, A. Brookes, E. Bruford, Piero Carninci, C. Chelala, Christine Couillault, S. Souza, Marie-Anne Debily, M. Devignes, I. Dubchak, T. Endo, A. Estreicher, E. Eyras, K. Fukami-Kobayashi, Gopal Gopinath, Esther Graudens, Y. Hahn, Michael Han, Ze-Guang Han, Kousuke Hanada, H. Hanaoka, Erimi Harada, K. Hashimoto, U. Hinz, M. Hirai, T. Hishiki, I. Hopkinson, S. Imbeaud, H. Inoko, Alexander Kanapin, Y. Kaneko, T. Kasukawa, J. Kelso, P. Kersey, R. Kikuno, Kouichi Kimura, B. Korn, V. Kuryshev, I. Makałowska, T. Makino, S. Mano, R. Mariage-Samson, J. Mashima, H. Matsuda, H. Mewes, S. Minoshima, Keiichi Nagai, Hideki Nagasaki, Naoki Nagata, Rajni Nigam, O. Ogasawara, O. Ohara, M. Ohtsubo, N. Okada, T. Okido, S. Oota, M. Ota, T. Ota, Tetsuji Otsuki, D. Piatier‐Tonneau, A. Poustka, S. Ren, N. Saitou, K. Sakai, S. Sakamoto, Ryuichi Sakate, I. Schupp, F. Servant, S. Sherry, Rie Shiba, N. Shimizu, M. Shimoyama, A. Simpson, B. Soares, C. Steward, M. Suwa, Mami Suzuki, Aiko Takahashi, G. Tamiya, Hiroshi Tanaka, T. Taylor, J. Terwilliger, P. Unneberg, V. Veeramachaneni, Shinya Watanabe, L. Wilming, N. Yasuda, H. Yoo, M. Stodolsky, W. Makałowski, M. Go, K. Nakai, T. Takagi, M. Kanehisa, Y. Sakaki, John Quackenbush, Y. Okazaki, Y. Hayashizaki, Winston Hide, R. Chakraborty, K. Nishikawa, H. Sugawara, Y. Tateno, Zhu Chen, M. Oishi, P. Tonellato, R. Apweiler, K. Okubo, L. Wagner, S. Wiemann, R. Strausberg, T. Isogai, C. Auffray, N. Nomura, T. Gojobori, S. Sugano (2004)
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA ClonesPLoS Biology, 2
Wanlong Li, Peng Zhang, J. Fellers, B. Friebe, B. Gill (2004)
Sequence composition, organization, and evolution of the core Triticeae genome.The Plant journal : for cell and molecular biology, 40 4
R. Song, J. Messing (2002)
Contiguous Genomic DNA Sequence Comprising the 19-kD Zein Gene Family from Maize1Plant Physiology, 130
A. Tikhonov, P. SanMiguel, Y. Nakajima, Nina Gorenstein, J. Bennetzen, Z. Avramova (1999)
Colinearity and its exceptions in orthologous adh regions of maize and sorghum.Proceedings of the National Academy of Sciences of the United States of America, 96 13
(2003)
Plant DNA C-values database
S. Hake, V. Walbot (1980)
The genome of Zea mays, its organization and homology to related grassesChromosoma, 79
S. Rudd, H. Mewes, K. Mayer (2003)
Sputnik: a database platform for comparative plant genomicsNucleic acids research, 31 1
E. Coe, K. Cone, M. McMullen, Su-shing Chen, G. Davis, J. Gardiner, E. Liscum, M. Polacco, A. Paterson, Hector Sanchez-Villeda, C. Soderlund, R. Wing (2002)
Access to the maize genome: an integrated physical and genetic map.Plant physiology, 128 1
Genes and genomes BioEssays
J. Bennetzen, K. Schrick, P. Springer, W. Brown, P. SanMiguel (1994)
Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA.Genome, 37 4
Yinan Yuan, P. SanMiguel, J. Bennetzen (2002)
Methylation-spanning linker libraries link gene-rich regions and identify epigenetic boundaries in Zea mays.Genome research, 12 9
N. Sharopova, M. McMullen, L. Schultz, Steven Schroeder, Hector Sanchez-Villeda, J. Gardiner, Dean Bergstrom, K. Houchins, S. Melia-Hancock, T. Musket, Ngozi Duru, M. Polacco, K. Edwards, T. Ruff, J. Register, Cory Brouwer, Richard Thompson, R. Velasco, E. Chin, Michael Lee, Wendy Woodman-Clikeman, M. Long, E. Liscum, K. Cone, G. Davis, E. Coe (2002)
Development and mapping of SSR markers for maizePlant Molecular Biology, 48
M. Adams, S. Celniker, R. Holt, C. Evans, J. Gocayne, P. Amanatides, S. Scherer, P. Li, R. Hoskins, R. Galle, R. George, S. Lewis, S. Richards, M. Ashburner, S. Henderson, G. Sutton, J. Wortman, M. Yandell, Q. Zhang, L. Chen, R. Brandon, Y. Rogers, R. Blazej, M. Champe, B. Pfeiffer, K. Wan, C. Doyle, E. Baxter, G. Helt, C. Nelson, G. Gábor, J. Abril, A. Agbayani, H. An, C. Andrews-Pfannkoch, D. Baldwin, R. Ballew, A. Basu, J. Baxendale, L. Bayraktaroglu, E. Beasley, K. Beeson, P. Benos, B. Berman, D. Bhandari, S. Bolshakov, D. Borkova, M. Botchan, J. Bouck, P. Brokstein, P. Brottier, K. Burtis, D. Busam, H. Butler, É. Cadieu, A. Center, I. Chandra, J. Cherry, S. Cawley, C. Dahlke, L. Davenport, P. Davies, B. Pablos, A. Delcher, Z. Deng, A. Mays, I. Dew, S. Dietz, K. Dodson, L. Doup, M. Downes, S. Dugan-Rocha, B. Dunkov, P. Dunn, K. Durbin, C. Evangelista, C. Ferraz, S. Ferriera, W. Fleischmann, C. Fosler, A. Gabrielian, N. Garg, W. Gelbart, K. Glasser, A. Glodek, F. Gong, J. Gorrell, Z. Gu, P. Guan, M. Harris, N. Harris, D. Harvey, T. Heiman, J. Hernandez, J. Houck, D. Hostin, K. Houston, T. Howland, M. Wei, C. Ibegwam, M. Jalali, F. Kalush, G. Karpen, Z. Ke, J. Kennison, K. Ketchum, B. Kimmel, C. Kodira, C. Kraft, S. Kravitz, D. Kulp, Z. Lai, P. Lasko, Y. Lei, A. Levitsky, J. Li, Z. Li, Y. Liang, X. Lin, X. Liu, B. Mattei, T. McIntosh, M. McLeod, D. McPherson, G. Merkulov, N. Milshina, C. Mobarry, J. Morris, A. Moshrefi, Stephen Mount, M. Moy, B. Murphy, L. Murphy, D. Muzny, D. Nelson, D. Nelson, K. Nelson, K. Nixon, D. Nusskern, J. Pacleb, M. Palazzolo, G. Pittman, S. Pan, J. Pollard, V. Puri, M. Reese, K. Reinert, K. Remington, R. Saunders, F. Scheeler, H. Shen, B. Shue, I. Sidén-Kiamos, M. Simpson, M. Skupski, T. Smith, E. Spier, A. Spradling, M. Stapleton, R. Strong, E. Sun, R. Svirskas, C. Tector, R. Turner, E. Venter, A. Wang, X. Wang, Z. Wang, D. Wassarman, G. Weinstock, J. Weissenbach, S. Williams, WoodageT, K. Worley, D. Wu, S. Yang, Q. Yao, J. Ye, R. Yeh, J. Zaveri, M. Zhan, G. Zhang, Q. Zhao, L. Zheng, X. Zheng, F. Zhong, W. Zhong, X. Zhou, S. Zhu, X. Zhu, H. Smith, R. Gibbs, E. Myers, G. Rubin, J. Venter (2000)
The genome sequence of Drosophila melanogaster.Science, 287 5461
J. Messing, A. Bharti, W. Karłowski, H. Gundlach, Hyeran Kim, Yeisoo Yu, Fusheng Wei, Galina Fuks, C. Soderlund, K. Mayer, R. Wing (2004)
Sequence composition and genome organization of maize.Proceedings of the National Academy of Sciences of the United States of America, 101 40
E. Lander, E. Lander, M. Waterman (1988)
Genomic mapping by fingerprinting random clones: a mathematical analysis.Genomics, 2 3
P. SanMiguel, B. Gaut, A. Tikhonov, Y. Nakajima, J. Bennetzen (1998)
The paleontology of intergene retrotransposons of maizeNature Genetics, 20
Jinsheng Lai, Jianxin Ma, Zuzana Swigoňová, W. Ramakrishna, E. Linton, V. Llaca, B. Tanyolac, Yong-Jin Park, O. Jeong, J. Bennetzen, J. Messing (2004)
Gene loss and movement in the maize genome.Genome research, 14 10A
Jun Yu, Songnian Hu, Jun Wang, G. Wong, Songgang Li, Bin Liu, Yajun Deng, L. Dai, Yan Zhou, Xiuqing Zhang, Mengliang Cao, Jing Liu, Jiandong Sun, Jiabin Tang, Yanjiong Chen, Xiaobing Huang, Wei Lin, C. Ye, W. Tong, Lijuan Cong, Jianing Geng, Yujun Han, Lin Li, Wei Li, G. Hu, Xiangang Huang, Wenjie Li, Jian Li, Zhanwei Liu, Long Li, Jianping Liu, Q. Qi, Jinsong Liu, Li Li, Tao Li, Xuegang Wang, Hong Lu, Tingting Wu, Miao Zhu, Peixiang Ni, Hua Han, Wei Dong, Xiaoyu Ren, Xiaoli Feng, P. Cui, Xianran Li, Hao Wang, Xin Xu, W. Zhai, Zhao Xu, Jinsong Zhang, Sijie He, Jianguo Zhang, Jichen Xu, Kunlin Zhang, Xianwu Zheng, Jianhai Dong, Wanyong Zeng, Lin Tao, Jia Ye, Jun Tan, Xide Ren, Xuewei Chen, Jun He, Daofeng Liu, W. Tian, Chaoguang Tian, Hong’ai Xia, Qiyu Bao, Gang Li, Hui Gao, Ting Cao, Juan Wang, Wenming Zhao, Ping Li, Wei Chen, Xudong Wang, Yong Zhang, Jian-Fei Hu, Jing Wang, Song Liu, Jian Yang, Guangyu Zhang, Yuqing Xiong, Zhijie Li, Long Mao, Chengshu Zhou, Zhen Zhu, Runsheng Chen, Bailin Hao, Wei-Mou Zheng, S. Chen, W. Guo, Guojie Li, Siqi Liu, M. Tao, Jian Wang, Lihuang Zhu, Longping Yuan, Huanming Yang (2002)
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)Science, 296
The Initiative (2000)
Analysis of the genome sequence of the flowering plant Arabidopsis thalianaNature, 408
G. Pertea, Xiaoqiu Huang, F. Liang, Valentin Antonescu, R. Sultana, S. Karamycheva, Yuandan Lee, Joseph White, F. Cheung, Babak Parvizi, J. Tsai, John Quackenbush (2003)
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasetsBioinformatics, 19 5
H. Yao, Ling Guo, Yan Fu, L. Borsuk, Tsui-Jung Wen, D. Skibbe, Xiangqin Cui, B. Scheffler, Jun Cao, S. Emrich, D. Ashlock, P. Schnable (2005)
Evaluation of five ab initio gene prediction programs for the discovery of maize genesPlant Molecular Biology, 57
E. Mardis, J. McPherson, R. Martienssen, R. Wilson, W. McCombie (2002)
What is finished, and why does it matter.Genome research, 12 5
Dan Inada, A. Bashir, Chung-Jen Lee, B. Thomas, Cynthia Ko, S. Goff, M. Freeling (2003)
Conserved noncoding sequences in the grasses.Genome research, 13 9
P. SanMiguel, A. Tikhonov, Y. Jin, Natasha Motchoulskaia, Dmitrii Zakharov, A. Melake-Berhan, P. Springer, K. Edwards, Michael Lee, Z. Avramova, J. Bennetzen (1996)
Nested Retrotransposons in the Intergenic Regions of the Maize GenomeScience, 274
Benjamin Burr, F. Burr, Keith Thompson, C. AlbertsonJT, Charles, W., Stuber (1988)
Gene mapping with recombinant inbreds in maize.Genetics, 118 3
Z. Lippman, Anne-Valerie Gendrel, M. Black, M. Vaughn, N. Dedhia, W. McCombie, Kimberly Lavine, V. Mittal, B. May, K. Kasschau, J. Carrington, R. Doerge, V. Colot, R. Martienssen (2004)
Role of transposable elements in heterochromatin and epigenetic controlNature, 430
H. Fu, H. Dooner (2002)
Intraspecific violation of genetic colinearity and its implications in maizeProceedings of the National Academy of Sciences of the United States of America, 99
M. Bonaldo, G. Lennon, M. Soares (1996)
Normalization and subtraction: two approaches to facilitate gene discovery.Genome research, 6 9
John Emberton, Jianxin Ma, Yinan Yuan, P. SanMiguel, J. Bennetzen (2005)
Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries.Genome research, 15 10
M. Guo, Mary Rupe, C. Zinselmeier, J. Habben, B. Bowen, O. Smith (2004)
Allelic Variation of Gene Expression in Maize HybridsThe Plant Cell Online, 16
G. Copenhaver, K. Nickel, T. Kuromori, M. Benito, S. Kaul, X. Lin, M. Bevan, G. Murphy, B. Harris, L. Parnell, W. McCombie, R. Martienssen, M. Marra, D. Preuss (1999)
Genetic definition and sequence analysis of Arabidopsis centromeres.Science, 286 5449
J. Bennetzen, C. Coleman, Renyi Liu, Jianxin Ma, W. Ramakrishna (2004)
Consistent over-estimation of gene number in complex plant genomes.Current opinion in plant biology, 7 6
K. Nagaki, Zhukuan Cheng, Zhukuan Cheng, Ouyang Shu, P. Talbert, Mary Kim, Kristine Jones, S. Henikoff, C. Buell, Jiming Jiang (2004)
Sequencing of a rice centromere uncovers active genesNature Genetics, 36
R. Flavell, M. Bennett, J. Smith, D. Smith (1974)
Genome size and the proportion of repeated nucleotide sequence DNA in plantsBiochemical Genetics, 12
S. Marillonnet, S. Wessler (1998)
Extreme structural heterogeneity among the members of a maize retrotransposon family.Genetics, 150 3
P. Rabinowicz, W. McCombie, R. Martienssen (2003)
Gene enrichment in plant genomic shotgun libraries.Current opinion in plant biology, 6 2
Article Identification and Characterization of Multi-Species Conserved Sequences
J. Venter, Hamilton Smith, L. Hood (1996)
A new strategy for genome sequencingNature, 381
R. Britten, D. Graham, B. Neufeld (1974)
Analysis of repeating DNA sequences by reassociation.Methods in enzymology, 29
Michael Lee, N. Sharopova, W. Beavis, D. Grant, Maria Katt, Deborah Blair, A. Hallauer (2002)
Expanding the genetic map of maize with the intermated B73 × Mo17 (IBM) populationPlant Molecular Biology, 48
S. Goff, D. Ricke, T. Lan, G. Presting, Ronglin Wang, Molly Dunn, J. Glazebrook, A. Sessions, P. Oeller, H. Varma, D. Hadley, Don Hutchison, Christopher Martin, F. Katagiri, B. Lange, Todd Moughamer, Yumei Xia, P. Budworth, Jingping Zhong, Trini Miguel, U. Paszkowski, Shiping Zhang, M. Colbert, Wei-lin Sun, Lili Chen, B. Cooper, Sylvia Park, T. Wood, Long Mao, P. Quail, R. Wing, R. Dean, Yeisoo Yu, A. Zharkikh, Richard Shen, S. Sahasrabudhe, Alun Thomas, R. Cannings, A. Gutin, D. Pruss, J. Reid, S. Tavtigian, Jeff Mitchell, G. Eldredge, T. Scholl, R. Miller, Satish Bhatnagar, N. Adey, T. Rubano, N. Tusneem, Rosann Robinson, Jane Feldhaus, T. Macalma, A. Oliphant, S. Briggs (2002)
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).Science, 296 5565
Takuji Sasaki, T. Matsumoto, Kimiko Yamamoto, K. Sakata, T. Baba, Y. Katayose, Jianzhon Wu, Y. Niimura, Zhukuan Cheng, Y. Nagamura, B. Antonio, H. Kanamori, Satomi Hosokawa, Masato Masukawa, Koji Arikawa, Yoshino Chiden, M. Hayashi, M. Okamoto, T. Ando, H. Aoki, Kohei Arita, Masao Hamada, Chizuko Harada, Saori Hijishita, M. Honda, Yoko Ichikawa, Atsuko Idonuma, M. Iijima, Michiko Ikeda, M. Ikeno, S. Ito, Tomoko Ito, Yuichi Ito, Y. Ito, A. Iwabuchi, Kozue Kamiya, Wataru Karasawa, S. Katagiri, A. Kikuta, N. Kobayashi, I. Kono, K. Machita, T. Maehara, H. Mizuno, T. Mizubayashi, Y. Mukai, Hideki Nagasaki, M. Nakashima, Yuko Nakama, Yu Nakamichi, Mari Nakamura, N. Namiki, Manami Negishi, I. Ohta, N. Ono, S. Saji, K. Sakai, Michie Shibata, T. Shimokawa, A. Shomura, Jianyu Song, Yuka Takazaki, Kimihiro Terasawa, K. Tsuji, K. Waki, Harumi Yamagata, H. Yamane, Shoji Yoshiki, Rie Yoshihara, Kazuko Yukawa, H. Zhong, H. Iwama, T. Endo, Hidetaka Ito, J. Hahn, Hoil Kim, M. Eun, M. Yano, Jiming Jiang, T. Gojobori (2002)
The genome sequence and structure of rice chromosome 1Nature, 420
Michael Palmer, Gina Pries, J. Gibson, H. Anderson, Manjiri Paradkar, Lindsay Crane, D. Jeffrey, T. Wood, D. Frisch, Friedrich Engler, C. Soderlund, L. Palmer (2003)
In-Depth View of Structure, Activity, and Evolution of Rice Chromosome 10Science, 300
E. Ryder, S. Russell (2003)
Transposable elements as tools for genomics and genetics in Drosophila.Briefings in functional genomics & proteomics, 2 1
B. May, Hong Liu, E. Vollbrecht, L. Senior, P. Rabinowicz, D. Roh, Xiaokang Pan, L. Stein, M. Freeling, D. Alexander, R. Martienssen (2003)
Maize-targeted mutagenesis: A knockout resource for maizeProceedings of the National Academy of Sciences of the United States of America, 100
Plant, and particularly cereal genomes, are challenging to sequence due to their large size and high repetitive DNA content. Gene‐enrichment strategies are alternative or complementary approaches to complete genome sequencing that yield, rapidly and inexpensively, useful sequence data from large and complex genomes. The maize genome is large (2.7 Gbp) and contains large amounts of conserved repetitive elements. Furthermore, the high allelic diversity found between maize inbred lines may necessitate sequencing several inbred lines in order to recover the maize “gene pool”. Two gene‐enrichment approaches, methylation filtration (MF) and high Cot (HC) sequencing have been tested in maize and their ability to sample the gene space has been examined. Combined with other genomic sequencing strategies, gene‐enriched genomic sequencing is a practical way to examine the maize gene pool, to order and orient the genic sequences on the genome, and to enable investigation of gene content of other complex plant genomes. BioEssays 27:839–848, 2005. © 2005 Wiley Periodicals, Inc.
BioEssays – Wiley
Published: Aug 1, 2005
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.