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Ole Wichmann, Petra Stöcker, Gabriele Poggensee, Doris Altmann, Dietmar Walter, Wiebke Hellenbrand, Gérard Krause, Tim Eckmanns (2010)
Pandemic influenza A(H1N1) 2009 breakthrough infections and estimates of vaccine effectiveness in Germany 2009-2010.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 15 18
G. Neumann, G. Brownlee, E. Fodor, Y. Kawaoka, Y. Kawaoka (2004)
Orthomyxovirus replication, transcription, and polyadenylation.Current topics in microbiology and immunology, 283
D. Posada, K. Crandall (2001)
Selecting the best-fit model of nucleotide substitution.Systematic biology, 50 4
M. Baker, H. Kelly, N. Wilson (2009)
Pandemic H1N1 influenza lessons from the southern hemisphere.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 14 42
N. Ferguson, A. Galvani, R. Bush (2003)
Ecological and immunological determinants of influenza evolutionNature, 422
Yīmíng Bào, P. Bolotov, D. Dernovoy, B. Kiryutin, L. Zaslavsky, T. Tatusova, J. Ostell, D. Lipman (2007)
The Influenza Virus Resource at the National Center for Biotechnology InformationJournal of Virology, 82
K. Tamura, J. Dudley, M. Nei, Sudhir Kumar (2007)
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.Molecular biology and evolution, 24 8
YI Wolf, C Viboud, EC Holmes, EV Koonin, DJ Lipman (2006)
Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virusBiol Direct, 1
A. Pontoriero, E. Baumeister, A. Campos, V. Savy, Y. Lin, A. Hay (2003)
Antigenic and genomic relation between human influenza viruses that circulated in Argentina in the period 1995-1999 and the corresponding vaccine components.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology, 28 2
J. Stevens, O. Blixt, T. Tumpey, J. Taubenberger, J. Paulson, I. Wilson (2006)
Structure and Receptor Specificity of the Hemagglutinin from an H5N1 Influenza VirusScience, 312
M. Deem, Keyao Pan (2009)
The epitope regions of H1-subtype influenza A, with application to vaccine efficacyProtein Engineering, Design and Selection, 22
Hidetoshi Shimodaira, M. Hasegawa (2001)
CONSEL: for assessing the confidence of phylogenetic tree selectionBioinformatics, 17 12
M. Nelson, D. Spiro, D. Wentworth, Jiang Fan, E. Beck, K. George, E. Ghedin, R. Halpin, J. Bera, E. Hine, Kathleen Proudfoot, Timothy Stockwell, Xudong Lin, Sara Griesemer, Michael Bose, Lisa Jurgens, Swati Kumar, C. Viboud, E. Holmes, K. Henrickson (2009)
The early diversification of influenza A/H1N1pdmPLoS Currents, 1
R. Garten, C. Davis, C. Russell, B. Shu, S. Lindstrom, A. Balish, W. Sessions, Xiyan Xu, E. Skepner, V. Deyde, M. Okomo-Adhiambo, L. Gubareva, J. Barnes, Catherine Smith, S. Emery, M. Hillman, P. Rivailler, James Smagala, M. Graaf, D. Burke, R. Fouchier, C. Pappas, C. Alpuche-Aranda, H. Lopez-Gatell, Hiram Olivera, Irma López, Christopher Myers, D. Faix, P. Blair, Cindy Yu, Kimberly Keene, P. Dotson, D. Boxrud, A. Sambol, S. Abid, K. George, T. Bannerman, A. Moore, D. Stringer, Patricia Blevins, Gail Demmler-Harrison, M. Ginsberg, P. Kriner, S. Waterman, S. Smole, H. Guevara, E. Belongia, P. Clark, S. Beatrice, R. Donis, J. Katz, L. Finelli, C. Bridges, M. Shaw, D. Jernigan, T. Uyeki, Derek Smith, A. Klimov, N. Cox (2009)
Antigenic and Genetic Characteristics of Swine-Origin 2009 A(H1N1) Influenza Viruses Circulating in HumansScience, 325
Derek Smith (2006)
Predictability and Preparedness in Influenza ControlScience, 312
Vishal Gupta, David Earl, M. Deem (2005)
Quantifying influenza vaccine efficacy and antigenic distance.Vaccine, 24 18
A. Gambaryan, A. Tuzikov, G. Pazynina, Nicolai Bovin, A. Balish, A. Klimov (2006)
Evolution of the receptor binding phenotype of influenza A (H5) viruses.Virology, 344 2
Derek Smith, A. Lapedes, J. Jong, T. Bestebroer, G. Rimmelzwaan, A. Osterhaus, R. Fouchier (2004)
Mapping the Antigenic and Genetic Evolution of Influenza VirusScience, 305
K. Lole, R. Bollinger, R. Paranjape, D. Gadkari, S. Kulkarni, Nicole Novak, Roxann Ingersoll, H. Sheppard, S. Ray (1999)
Full-Length Human Immunodeficiency Virus Type 1 Genomes from Subtype C-Infected Seroconverters in India, with Evidence of Intersubtype RecombinationJournal of Virology, 73
H. Debray, D. Decout, G. Strecker, G. Spik, J. Montreuil (2005)
Specificity of Twelve Lectins Towards Oligosaccharides and Glycopeptides Related to N‐GlycosylproteinsFEBS Journal, 117
E. Kilbourne, Catherine Smith, Ian Brett, B. Pokorny, B. Johansson, N. Cox (2002)
The total influenza vaccine failure of 1947 revisited: Major intrasubtypic antigenic change can explain failure of vaccine in a post-World War II epidemicProceedings of the National Academy of Sciences of the United States of America, 99
M. Hilleman (2002)
Realities and enigmas of human viral influenza: pathogenesis, epidemiology and control.Vaccine, 20 25-26
Guang-Wu Chen, S. Shih (2009)
Genomic Signatures of Influenza A Pandemic (H1N1) 2009 VirusEmerging Infectious Diseases, 15
J. Jong, G. Rimmelzwaan, R. Fouchier, A. Osterhaus (2000)
Influenza virus: a master of metamorphosis.The Journal of infection, 40 3
(2006)
Biology Direct BioMed Central
M. Nelson, C. Viboud, L. Simonsen, Ryan Bennett, Sara Griesemer, K. George, Jill Taylor, D. Spiro, Naomi Sengamalay, E. Ghedin, J. Taubenberger, E. Holmes (2008)
Multiple Reassortment Events in the Evolutionary History of H1N1 Influenza A Virus Since 1918PLoS Pathogens, 4
H Zhou, R Pophale, MW Deem (2009)
Influenza: molecular virology
J. Moreland, A. Gramada, O. Buzko, Qing Zhang, P. Bourne (2005)
The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applicationsBMC Bioinformatics, 6
R. Bush, W. Fitch, C. Bender, N. Cox (1999)
Positive selection on the H3 hemagglutinin gene of human influenza virus A.Molecular biology and evolution, 16 11
Stéphane Guindon, Franck Lethiec, P. Duroux, O. Gascuel (2018)
PHYML Online: A Web Server for Fast Maximum Likelihood-Based Phylogenetic Inference
E. Holmes (2009)
RNA virus genomics: a world of possibilities.The Journal of clinical investigation, 119 9
R. Xu, D. Ekiert, Jens Krause, R. Hai, J. Crowe, I. Wilson (2010)
Structural Basis of Preexisting Immunity to the 2009 H1N1 Pandemic Influenza VirusScience, 328
J. Stevens, A. Corper, C. Basler, J. Taubenberger, P. Palese, I. Wilson (2004)
Structure of the Uncleaved Human H1 Hemagglutinin from the Extinct 1918 Influenza VirusScience, 303
V. Potdar, M. Chadha, S. Jadhav, J. Mullick, S. Cherian, A. Mishra (2010)
Genetic Characterization of the Influenza A Pandemic (H1N1) 2009 Virus Isolates from IndiaPLoS ONE, 5
H Debray, D Decout, G Strecker, G Spik, J Montreuil (1981)
Specificity of twelve lectins towards oligosaccharides and glycopeptides related to N-glycosylproteinsEur J Biochem, 117
J. Nguyen-Van-Tam, A. Hampson (2003)
The epidemiology and clinical impact of pandemic influenza.Vaccine, 21 16
Robert Edgar (2004)
MUSCLE: a multiple sequence alignment method with reduced time and space complexityBMC Bioinformatics, 5
Hidetoshi Shimodaira (2002)
An approximately unbiased test of phylogenetic tree selection.Systematic biology, 51 3
A. Caton, G. Brownlee, J. Yewdell, W. Gerhard (1982)
The antigenic structure of the influenza virus A/PR/8/34 hemagglutinin (H1 subtype)Cell, 31
G. Glinsky (2010)
Genomic analysis of pandemic (H1N1) 2009 reveals association of increasing disease severity with emergence of novel hemagglutinin mutationsCell Cycle, 9
Rao Zhou, Ramdas Pophale, M. Deem (2009)
Computer-assisted vaccine designarXiv: Populations and Evolution
Natalia Goñi, J. Russi, J. Cristina (2009)
Human influenza A viruses isolated in South America: genetic relations, adamantane resistance and vaccine strain match.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 9 2
M. Nelson, E. Holmes (2007)
The evolution of epidemic influenzaNature Reviews Genetics, 8
G. Neumann, T. Noda, Y. Kawaoka (2009)
Emergence and pandemic potential of swine-origin H1N1 influenza virusNature, 459
M. Salminen, J. Carr, D. Burke, F. McCutchan (1995)
Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning.AIDS research and human retroviruses, 11 11
M. Anisimova, O. Gascuel (2006)
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative.Systematic biology, 55 4
The first influenza pandemic of this century was declared in April of 2009, with the emergence of a novel H1N1 influenza A virus strain (H1N1pdm). Understanding the evolution of H1N1pdm strains within the South American region is essential for studying global diversification, emergence and resistance, as well as determining vaccine efficacy. In order to gain insight into these matters, phylogenetic analysis was performed using 29 hemagglutinin (HA) gene sequences from H1N1pdm strains isolated in South America. The results of these studies revealed that clade 7 was the dominant H1N1pdm lineage in South America. None of the strains isolated in South America clustered together with the 2010 H1 vaccine strain. Amino acid substitutions P100S, S220T and I338V were found in almost all HAs of South American H1N1pdm strains.
Archives of Virology – Springer Journals
Published: Jan 1, 2011
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