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Kobe Vlieghe, M. Vuylsteke, Kobe Florquin, S. Rombauts, S. Maes, Sandra Ormenese, P. Hummelen, Y. Peer, D. Inzé, L. Veylder (2003)
Microarray analysis of E2Fa-DPa-overexpressing plants uncovers a cross-talking genetic network between DNA replication and nitrogen assimilationJournal of Cell Science, 116
Dewitte (2003)
The plant cell cycleAnn. Rev. Plant Biol., 54
J. Reichheld, C. Gigot, N. Chaubet-Gigot (1998)
Multilevel regulation of histone gene expression during the cell cycle in tobacco cellsNucleic acids research, 26 13
M. Shindo, M. Shindo, H. Nakano, H. Kuroyanagi, T. Shirasawa, M. Mihara, D. Gilbert, N. Jenkins, N. Copeland, H. Yagita, K. Okumura (1998)
cDNA cloning, expression, subcellular localization, and chromosomal assignment of mammalian aurora homologues, aurora-related kinase (ARK) 1 and 2.Biochemical and biophysical research communications, 244 1
S. Abrahams, G. Cavet, E. Oakenfull, J. Carmichael, Z. Shah, R. Soni, J. Murray (2001)
A novel and highly divergent Arabidopsis cyclin isolated by complementation in budding yeast.Biochimica et biophysica acta, 1539 1-2
Z. Magyar, A. Atanassova, L. Veylder, S. Rombauts, D. Inzé (2000)
Characterization of two distinct DP‐related genes from Arabidopsis thaliana 1FEBS Letters, 486
Catherine Riou-Khamlichi, M. Menges, J. Healy, J. Murray (2000)
Sugar Control of the Plant Cell Cycle: Differential Regulation of Arabidopsis D-Type Cyclin Gene ExpressionMolecular and Cellular Biology, 20
M. May, C. Leaver (1993)
Oxidative Stimulation of Glutathione Synthesis in Arabidopsis thaliana Suspension Cultures, 103
Global analysis of plant core cell cycle regulators 21
Masaki Ito, S. Araki, Sachihiro Matsunaga, Takashi Itoh, R. Nishihama, Y. Machida, J. Doonan, Akira Watanabe (2001)
G2/M-Phase–Specific Transcription during the Plant Cell Cycle Is Mediated by c-Myb–Like Transcription FactorsThe Plant Cell Online, 13
(2004)
Genome-wide analysis of the cyclin family in Arabidopsis and comparative phylogenetic analysis of plant cyclin-like proteins
Á. Cebolla, José Vinardell, E. Kiss, B. Oláh, F. Roudier, A. Kondorosi, E. Kondorosi (1999)
The mitotic inhibitor ccs52 is required for endoreduplication and ploidy‐dependent cell enlargement in plantsThe EMBO Journal, 18
Martin Lauber, I. Waizenegger, T. Steinmann, H. Schwarz, U. Mayer, I. Hwang, W. Lukowitz, G. Jürgens (1997)
The Arabidopsis KNOLLE Protein Is a Cytokinesis-specific SyntaxinThe Journal of Cell Biology, 139
Curr. Opin. Plant Biol
A. Capron, L. Okrész, P. Genschik (2003)
First glance at the plant APC/C, a highly conserved ubiquitin-protein ligase.Trends in plant science, 8 2
S. Brenner, Maria Johnson, J. Bridgham, G. Golda, D. Lloyd, David Johnson, Shujun Luo, S. Mccurdy, M. Foy, Mark Ewan, Rithy Roth, Dave George, S. Eletr, G. Albrecht, Eric Vermaas, Steven Williams, Keith Moon, T. Burcham, Michael Pallas, R. Dubridge, James Kirchner, K. Fearon, J. Mao, K. Corcoran (2000)
Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arraysNature Biotechnology, 18
Stephen Taylor, Edward Ha, F. McKeon (1998)
The Human Homologue of Bub3 Is Required for Kinetochore Localization of Bub1 and a Mad3/Bub1-related Protein KinaseThe Journal of Cell Biology, 142
Rey-Huei Chen (2002)
BubR1 is essential for kinetochore localization of other spindle checkpoint proteins and its phosphorylation requires Mad1The Journal of Cell Biology, 158
L. Hennig, M. Menges, J. Murray, W. Gruissem (2003)
Arabidopsis transcript profiling on Affymetrix GeneChip arraysPlant Molecular Biology, 53
Ping Yang, K. Taoka, T. Nakayama, M. Iwabuchi (1995)
Structural and functional characterization of two wheat histone H2B promotersPlant Molecular Biology, 28
S. Kosugi, Y. Ohashi (2002)
E2Ls, E2F-like Repressors of Arabidopsis That Bind to E2F Sites in a Monomeric Form*The Journal of Biological Chemistry, 277
I. Meskiene, L. Bögre, M. Dahl, M. Pirck, D. Ha, I. Swoboda, E. Heberle‐Bors, G. Ammerer, H. Hirt (1995)
cycMs3, a novel B-type alfalfa cyclin gene, is induced in the G0-to-G1 transition of the cell cycle.The Plant cell, 7 6
R. Huntley, J. Murray (1999)
The plant cell cycle.Current opinion in plant biology, 2 6
S. Araki, Masaki Ito, T. Soyano, R. Nishihama, Y. Machida (2004)
Mitotic Cyclins Stimulate the Activity of c-Myb-like Factors for Transactivation of G2/M Phase-specific Genes in Tobacco*Journal of Biological Chemistry, 279
Jiaqi Shi, Yongmei Feng, A. Goulet, R. Vaillancourt, N. Sachs, J. Hershey, M. Nelson (2003)
The p34 cdc2 -related Cyclin-dependent kinase 11 Interacts with the p47 Subunit of Eukaryotic Initiation Factor 3 during Apoptosis*The Journal of Biological Chemistry, 278
Catherine Riou-Khamlichi, R. Huntley, A. Jacqmard, J. Murray (1999)
Cytokinin activation of Arabidopsis cell division through a D-type cyclin.Science, 283 5407
Philippe Lessard, J. Bouly, S. Jouannic, M. Kreis, Martine Thomas (1999)
Identification of cdc2cAt: a new cyclin-dependent kinase expressed in Arabidopsis thaliana flowers.Biochimica et biophysica acta, 1445 3
I. Landrieu, M. Costa, L. Veylder, F. Dewitte, K. Vandepoele, S. Hassan, J. Wieruszeski, F. Corellou, J. Faure, M. Montagu, D. Inzé, G. Lippens (2004)
A small CDC25 dual-specificity tyrosine-phosphatase isoform in Arabidopsis thaliana.Proceedings of the National Academy of Sciences of the United States of America, 101 36
S. Planchais, A. Samland, J. Murray (2004)
Differential stability of Arabidopsis D-type cyclins: CYCD3;1 is a highly unstable protein degraded by a proteasome-dependent mechanism.The Plant journal : for cell and molecular biology, 38 4
Hirayama Takashi, Imajuku Yoshiro, Anai Toyoaki, Matsui Minami, Oka Atsuhiro (1991)
Identification of two cell-cycle-controlling cdc2 gene homologs in Arabidopsis thaliana.Gene, 105 2
Z. Magyar, T. Mészáros, P. Miskolczi, M. Deák, A. Fehér, Spencer Brown, E. Kondorosi, A. Athanasiadis, S. Pongor, M. Bilgin, L. Bakó, C. Koncz, D. Dudits (1997)
Cell cycle phase specificity of putative cyclin-dependent kinase variants in synchronized alfalfa cells.The Plant cell, 9
G. Gopalan, Clarence Chan, P. Donovan (1997)
A Novel Mammalian, Mitotic Spindle–associated Kinase Is Related to Yeast and Fly Chromosome Segregation RegulatorsThe Journal of Cell Biology, 138
S. Jager, M. Menges, U. Bauer, J. Murray (2001)
Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activitiesPlant Molecular Biology, 47
J. Renaudin, J. Doonan, Donna Freeman, J. Hashimoto, H. Hirt, D. Inzé, T. Jacobs, H. Kouchi, P. Rouzé, M. Sauter, A. Savouré, D. Sorrell, V. Sundaresan, J. Murray (1996)
Plant cyclins: a unified nomenclature for plant A-, B- and D-type cyclins based on sequence organizationPlant Molecular Biology, 32
S. Burssens, M. Montagu, D. Inzé (1998)
The cell cycle in ArabidopsisPlant Physiology and Biochemistry, 36
W. Lukowitz, U. Mayer, G. Jürgens (1996)
Cytokinesis in the Arabidopsis Embryo Involves the Syntaxin-Related KNOLLE Gene ProductCell, 84
Y. Setiady, M. Sekine, N. Hariguchi, T. Yamamoto, H. Kouchi, A. Shinmyō (1995)
Tobacco mitotic cyclins: cloning, characterization, gene expression and functional assay.The Plant journal : for cell and molecular biology, 8 6
M. Castellano, J. Pozo, E. Ramírez-Parra, Spencer Brown, C. Gutiérrez (2001)
Expression and Stability of Arabidopsis CDC6 Are Associated with Endoreplication Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010329.The Plant Cell Online, 13
K. Livak, Thomas Schmittgen (2001)
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.Methods, 25 4
J. Acosta, J. Engler, Jeroen Raes, Z. Magyar, R. Groodt, Dirk Inzé, L. Veylder (2004)
Molecular characterization of Arabidopsis PHO80-like proteins, a novel class of CDKA;1-interacting cyclinsCellular and Molecular Life Sciences CMLS, 61
N. Ohtsubo, T. Nakayama, H. Kaya, R. Terada, K. Shimamoto, T. Meshi, M. Iwabuchi (1997)
Cooperation of two distinct cis-acting elements is necessary for the S phase-specific activation of the wheat histone H3 promoterPlant Journal, 11
Ito (2001)
G2/M-phase-specific transcription during the plant cell cycle is mediated by c-Myb-like transcription factorsPlant Cell, 13
J. Healy, M. Menges, J. Doonan, J. Murray (2001)
The Arabidopsis D-type Cyclins CycD2 and CycD3 Both Interact in Vivo with the PSTAIRE Cyclin-dependent Kinase Cdc2a but Are Differentially Controlled*The Journal of Biological Chemistry, 276
Georg Strompen, F. Kasmi, Sandra Richter, W. Lukowitz, F. Assaad, G. Jürgens, U. Mayer (2002)
The Arabidopsis HINKEL Gene Encodes a Kinesin-Related Protein Involved in Cytokinesis and Is Expressed in a Cell Cycle-Dependent MannerCurrent Biology, 12
Hong-Guo Yu, M. Muszynski, R. Dawe, Kelly Dawe (1999)
The Maize Homologue of the Cell Cycle Checkpoint Protein MAD2 Reveals Kinetochore Substructure and Contrasting Mitotic and Meiotic Localization PatternsThe Journal of Cell Biology, 145
R. Nishihama, T. Soyano, M. Ishikawa, S. Araki, Hirokazu Tanaka, T. Asada, K. Irie, Mayumi Ito, M. Terada, H. Banno, Yoshiko Yamazaki, Y. Machida (2002)
Expansion of the Cell Plate in Plant Cytokinesis Requires a Kinesin-like Protein/MAPKKK ComplexCell, 109
M. Menges, J. Murray (2002)
Synchronous Arabidopsis suspension cultures for analysis of cell-cycle gene activity.The Plant journal : for cell and molecular biology, 30 2
Saeed Tavazoie, J. Hughes, M. Campbell, Raymond Cho, G. Church (1999)
Systematic determination of genetic network architectureNature Genetics, 22
J. Reichheld, N. Chaubet, W. Shen, J. Renaudin, C. Gigot (1996)
Multiple A-type cyclins express sequentially during the cell cycle in Nicotiana tabacum BY2 cells.Proceedings of the National Academy of Sciences of the United States of America, 93 24
M. Yamaguchi, T. Fabian, M. Sauter, R. Bhalerao, J. Schrader, G. Sandberg, M. Umeda, H. Uchimiya (2000)
Activation of CDK-activating kinase is dependent on interaction with H-type cyclins in plants.The Plant journal : for cell and molecular biology, 24 1
Akie Shimotohno, Satoko Matsubayashi, M. Yamaguchi, H. Uchimiya, M. Umeda (2003)
Differential phosphorylation activities of CDK‐activating kinases in Arabidopsis thalianaFEBS Letters, 534
J. Joubès, C. Chevalier, D. Dudits, E. Heberle‐Bors, D. Inzé, M. Umeda, J. Renaudin (2000)
CDK-related protein kinases in plantsPlant Molecular Biology, 43
Vandepoele (2002)
Genome-wide analysis of core cell cycle genes in ArabidopsisPlant Cell, 14
P. Fobert, V. Gaudin, P. Lunness, E. Coen, J. Doonan (1996)
Distinct classes of cdc2-related genes are differentially expressed during the cell division cycle in plants.The Plant cell, 8
D. Sorrell, B. Combettes, N. Chaubet-Gigot, C. Gigot, J. Murray (1999)
Distinct cyclin D genes show mitotic accumulation or constant levels of transcripts in tobacco bright yellow-2 cells.Plant physiology, 119 1
A. Kono, C. Umeda-Hara, Jeongkyung Lee, Masaki Ito, H. Uchimiya, M. Umeda (2003)
Arabidopsis D-Type Cyclin CYCD4;1 Is a Novel Cyclin Partner of B2-Type Cyclin-Dependent Kinase1Plant Physiology, 132
Peter Breyne, Rozemarijn Dreesen, Bernard Cannoot, Debbie Rombaut, Klaas Vandepoele, S. Rombauts, Rudy Vanderhaeghen, Dirk Inzé, M. Zabeau (2003)
Quantitative cDNA-AFLP analysis for genome-wide expression studiesMolecular Genetics and Genomics, 269
M. Eisen, P. Spellman, P. Brown, D. Botstein (1998)
Cluster analysis and display of genome-wide expression patterns.Proceedings of the National Academy of Sciences of the United States of America, 95 25
W. Marzluff, R. Duronio (2002)
Histone mRNA expression: multiple levels of cell cycle regulation and important developmental consequences.Current opinion in cell biology, 14 6
V. Mironov, L. Veylder, M. Montagu, D. Inzé (1999)
Cyclin-Dependent Kinases and Cell Division in Plants—The NexusPlant Cell, 11
W. Dewitte, Catherine Riou-Khamlichi, S. Scofield, J. Healy, A. Jacqmard, N. Kilby, James Murray (2003)
Altered Cell Cycle Distribution, Hyperplasia, and Inhibited Differentiation in Arabidopsis Caused by the D-Type Cyclin CYCD3 Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.004838.The Plant Cell Online, 15
S. Planchais, C. Perennes, N. Glab, V. Mironov, D. Inzé, C. Bergounioux (2002)
Characterization of cis-acting element involved in cell cycle phase-independent activation of Arath;CycB1;1 transcription and identification of putative regulatory proteinsPlant Molecular Biology, 50
N. Chaubet, Martine Flénet, B. Clément, P. Brignon, C. Gigot (1996)
Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene.The Plant journal : for cell and molecular biology, 10 3
B. Combettes, J. Reichheld, M. Chabouté, G. Philipps, W. Shen, N. Chaubet-Gigot (1999)
Study of phase-specific gene expression in synchronized tobacco cells.Methods in cell science : an official journal of the Society for In Vitro Biology, 21 2-3
M. Umeda, R. Bhalerao, J. Schell, H. Uchimiya, C. Koncz (1998)
A distinct cyclin-dependent kinase-activating kinase of Arabidopsis thaliana.Proceedings of the National Academy of Sciences of the United States of America, 95 9
T. Evans, E. Rosenthal, J. Youngblom, D. Distel, T. Hunt (1983)
Cyclin: A protein specified by maternal mRNA in sea urchin eggs that is destroyed at each cleavage divisionCell, 33
J. Thompson, D. Higgins, T. Gibson (1994)
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.Nucleic acids research, 22 22
D. Morgan (1997)
Cyclin-dependent kinases: engines, clocks, and microprocessors.Annual review of cell and developmental biology, 13
E. Ramírez-Parra, C. Fründt, C. Gutiérrez (2003)
A genome-wide identification of E2F-regulated genes in Arabidopsis.The Plant journal : for cell and molecular biology, 33 4
K. Taoka, H. Kaya, T. Nakayama, T. Araki, T. Meshi, M. Iwabuchi (1999)
Identification of three kinds of mutually related composite elements conferring S phase-specific transcriptional activation.The Plant journal : for cell and molecular biology, 18 6
M. Ito, C. Marie-claire, M. Sakabe, T. Ohno, S. Hata, H. Kouchi, J. Hashimoto, H. Fukuda, A. Komamine, A. Watanabe (1997)
Cell-cycle-regulated transcription of A- and B-type plant cyclin genes in synchronous cultures.The Plant journal : for cell and molecular biology, 11 5
S. Jager, J. Murray (1999)
Retinoblastoma proteins in plantsPlant Molecular Biology, 41
Y. Azumi, Dehua Liu, Dazhong Zhao, Wuxing Li, Guanfang Wang, Yi Hu, Hong Ma (2002)
Homolog interaction during meiotic prophase I in Arabidopsis requires the SOLO DANCERS gene encoding a novel cyclin‐like proteinThe EMBO Journal, 21
R. Giet, D. Glover (2001)
Drosophila Aurora B Kinase Is Required for Histone H3 Phosphorylation and Condensin Recruitment during Chromosome Condensation and to Organize the Central Spindle during CytokinesisThe Journal of Cell Biology, 152
M. Menges, L. Hennig, W. Gruissem, J. Murray (2003)
Genome-wide gene expression in an Arabidopsis cell suspensionPlant Molecular Biology, 53
Yuh-Chyn Yu, A. Steinmetz, D. Meyer, Spencer Brown, W. Shen (2003)
The Tobacco A-Type Cyclin , Nicta ; CYCA 3 ; 2 , at the Nexus of Cell Division and Differentiation
K. Quandt, K. Frech, H. Karas, E. Wingender, Thomas Werner (1995)
MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data.Nucleic acids research, 23 23
Castellano (2001)
Expression and stability of Arabidopsis CDC6 are associated with endoreplicationPlant Cell, 13
(2002)
Cell cycle-regulated gene expression in Arabidopsis
M. Umeda, C. Umeda-Hara, H. Uchimiya (2000)
A cyclin-dependent kinase-activating kinase regulates differentiation of root initial cells in Arabidopsis.Proceedings of the National Academy of Sciences of the United States of America, 97 24
K. Livak, Thomas Schmittgen
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 2 DD C T Method
Songwen Zhang, M. Cai, Si Zhang, Songli Xu, She Chen, Xiaoning Chen, C. Chen, J. Gu (2002)
Interaction of p58PITSLRE, a G2/M-specific Protein Kinase, with Cyclin D3*The Journal of Biological Chemistry, 277
C. Gutiérrez, E. Ramírez-Parra, M. Castellano, J. Pozo (2002)
G(1) to S transition: more than a cell cycle engine switch.Current opinion in plant biology, 5 6
J. Pozo, M. Boniotti, C. Gutiérrez (2002)
Arabidopsis E2Fc functions in cell division and is degraded by the ubiquitin-SCF(AtSKP2) pathway in response to light.The Plant cell, 14 12
Arabidopsis has over 80 genes encoding conserved and plant‐specific core cell cycle regulators, but in most cases neither their timing of expression in the cell cycle is known nor whether they represent redundant and/or tissue‐specific functions. Here we identify novel cell cycle regulators, including new cyclin‐dependent kinases related to the mammalian galactosyltransferase‐associated protein kinase p58, and new classes of cyclin‐like and CDK‐like proteins showing strong tissue specificity of expression. We analyse expression of all cell cycle regulators in synchronized Arabidopsis cell cultures using multiple approaches including Affymetrix microarrays, massively parallel signature sequencing and real‐time reverse transcriptase polymerase chain reaction, and in plant material using the results of over 320 microarray experiments. These global analyses reveal that most core cell cycle regulators are expressed across almost all tissues and more than 85% are expressed at detectable levels in the cell suspension culture, allowing us to present a unified model of transcriptional regulation of the plant cell cycle. Characteristic patterns of D‐cyclin expression in early and late G1 phase, either limited to the re‐entry cycle or continuously oscillating, suggest that several CYCD genes with strong oscillatory regulation in late G1 may play the role of cyclin E in plants. Alone amongst the six groups of A and B type cyclins, members of CYCA3 peak in S‐phase suggest it is a major component of S‐phase kinases, whereas others show a peak in G2/M. 82 genes share this G2/M regulatory pattern, about half being new candidate mitotic genes of previously unknown function.
The Plant Journal – Wiley
Published: Feb 1, 2005
Keywords: ; ; ; ;
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