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References (164)
-
B. Malek, E. Graaff, K. Schneitz, B. Keller (2002)
The Arabidopsis male-sterile mutant dde2-2 is defective in the ALLENE OXIDE SYNTHASE gene encoding one of the key enzymes of the jasmonic acid biosynthesis pathwayPlanta, 216
-
J. Turner, Christine Ellis, A. Devoto (2002)
The Jasmonate Signal Pathway Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.000679.The Plant Cell Online, 14
-
Jennifer To, G. Haberer, F. Ferreira, J. Deruère, M. Mason, G. Schaller, J. Alonso, J. Ecker, J. Kieber (2004)
Type-A Arabidopsis Response Regulators Are Partially Redundant Negative Regulators of Cytokinin Signaling Online version contains Web-only data.The Plant Cell Online, 16
-
A. Diener, F. Ausubel (2005)
RESISTANCE TO FUSARIUM OXYSPORUM 1, a Dominant Arabidopsis Disease-Resistance Gene, Is Not Race SpecificGenetics, 171
-
M. Fujita, Y. Fujita, K. Maruyama, M. Seki, K. Hiratsu, M. Ohme-Takagi, L. Tran, K. Yamaguchi-Shinozaki, K. Shinozaki (2004)
A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway.The Plant journal : for cell and molecular biology, 39 6
-
D. Xie, B. Feys, Sarah James, M. Nieto-Rostro, J. Turner (1998)
COI1: an Arabidopsis gene required for jasmonate-regulated defense and fertility.Science, 280 5366
-
L. Xu, F. Liu, E. Lechner, P. Genschik, W.L. Crosby, H. Ma, W. Peng, D. Huang, D. Xie (2002)
The SCF (COI1) ubiquitin–ligase complexes are required for jasmonate response in ArabidopsisJ. Bacteriol., 14
-
J.G. Turner, C. Ellis, A. Devoto (2002)
The jasmonate signal pathwayPlant J., 14
-
J. Wan, F.M. Dunning, A.F. Bent (2002)
Probing plant‐pathogen interactions and downstream defense signaling using DNA microarraysPlant Cell, 2
-
A. Saeed, V. Sharov, J. White, J. Li, W. Liang, N. Bhagabati, J. Braisted, M. Kłapa, T. Currier, M. Thiagarajan, A. Sturn, M. Snuffin, A. Rezantsev, D. Popov, A. Ryltsov, E. Kostukovich, I. Borisovsky, Z. Liu, A. Vinsavich, V. Trush, John Quackenbush (2003)
TM4: a free, open-source system for microarray data management and analysis.BioTechniques, 34 2
-
K.K. Niyogi, R.L. Last, G.R. Fink, B. Keith (1993)
Suppressors of trp1 fluorescence identify a new Arabidopsis gene, TRP4, encoding the anthranilate synthase beta subunitCurr. Opin. Plant Biol., 5
-
S. He, K. Nomura, T. Whittam (2004)
Type III protein secretion mechanism in mammalian and plant pathogens.Biochimica et biophysica acta, 1694 1-3
-
Shiv Tiwari, G. Hagen, T. Guilfoyle (2004)
Aux/IAA Proteins Contain a Potent Transcriptional Repression DomainThe Plant Cell Online, 16
-
J.P. To, G. Haberer, F.J. Ferreira, J. Deruere, M.G. Mason, G.E. Schaller, J.M. Alonso, J.R. Ecker, J.J. Kieber (2004)
Type‐A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signalingPlant Cell, 16
-
Jeff Chang, Jonathan Urbach, Terry Law, L. Arnold, An Hu, S. Gombar, S. Grant, F. Ausubel, J. Dangl (2005)
A high-throughput, near-saturating screen for type III effector genes from Pseudomonas syringae.Proceedings of the National Academy of Sciences of the United States of America, 102 7
-
I. D’Agostino, J. Deruère, J. Kieber (2000)
Characterization of the response of the Arabidopsis response regulator gene family to cytokinin.Plant physiology, 124 4
-
M. Berin, A. Darfeuille‐Michaud, L. Egan, Y. Miyamoto, M. Kagnoff (2002)
Role of EHEC O157:H7 virulence factors in the activation of intestinal epithelial cell NF‐κB and MAP kinase pathways and the upregulated expression of interleukin 8Cellular Microbiology, 4
-
E. Yang, Y. Oh, E. Lee, A. Park, S. Cho, Y. Yoo, Ohkmae Park (2003)
Oxygen-evolving enhancer protein 2 is phosphorylated by glycine-rich protein 3/wall-associated kinase 1 in Arabidopsis.Biochemical and biophysical research communications, 305 4
-
Lionel Navarro, C. Zipfel, Owen Rowland, Ingo Keller, S. Robatzek, T. Boller, Jonathan Jones (2004)
The Transcriptional Innate Immune Response to flg22. Interplay and Overlap with Avr Gene-Dependent Defense Responses and Bacterial Pathogenesis1[w]Plant Physiology, 135
-
Kaori Miyawaki, Miho Matsumoto-Kitano, T. Kakimoto (2004)
Expression of cytokinin biosynthetic isopentenyltransferase genes in Arabidopsis: tissue specificity and regulation by auxin, cytokinin, and nitrate.The Plant journal : for cell and molecular biology, 37 1
-
T. Tantikanjana, M.D. Mikkelsen, M. Hussain, B.A. Halkier, V. Sundaresan (2004)
Functional analysis of the tandem‐duplicated P450 genes SPS/BUS/CYP79F1 and CYP79F2 in glucosinolate biosynthesis and plant development by Ds transposition‐generated double mutantsPlant J., 135
-
H. Abé, T. Urao, Takuya Ito, M. Seki, K. Shinozaki, K. Yamaguchi-Shinozaki (2003)
Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) Function as Transcriptional Activators in Abscisic Acid Signaling Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.006130.The Plant Cell Online, 15
-
L. Gómez-Gómez, G. Felix, T. Boller (1999)
A single locus determines sensitivity to bacterial flagellin in Arabidopsis thaliana.The Plant journal : for cell and molecular biology, 18 3
-
Z.H. He, I. Cheeseman, D. He, B.D. Kohorn (1999)
A cluster of five cell wall‐associated receptor kinase genes, Wak1–5, are expressed in specific organs of ArabidopsisBiochim. Biophys. Acta, 39
-
E. Bray (2002)
Abscisic acid regulation of gene expression during water-deficit stress in the era of the Arabidopsis genome.Plant, cell & environment, 25 2
-
V. Vernoud, A.C. Horton, Z. Yang, E. Nielsen (2003)
Analysis of the small GTPase gene superfamily of ArabidopsisFunct. Integr. Genomics, 131
-
Q. Jin, R. Thilmony, J. Zwiesler‐Vollick, S. He (2003)
Type III protein secretion in Pseudomonas syringae.Microbes and infection, 5 4
-
L. Gómez-Gómez, T. Boller (2000)
FLS2: an LRR receptor-like kinase involved in the perception of the bacterial elicitor flagellin in Arabidopsis.Molecular cell, 5 6
-
T. Werner, V. Motyka, V. Laucou, Rafaël Smets, H. Onckelen, T. Schmülling (2003)
Cytokinin-Deficient Transgenic Arabidopsis Plants Show Multiple Developmental Alterations Indicating Opposite Functions of Cytokinins in the Regulation of Shoot and Root Meristem Activity Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.014928The Plant Cell Online, 15
-
B. Keith, X.N. Dong, F.M. Ausubel, G.R. Fink (1991)
Differential induction of 3‐deoxy‐D‐arabino‐heptulosonate 7‐phosphate synthase genes in Arabidopsis thaliana by wounding and pathogenic attackPlant J., 88
-
Y. Nagano, Y. Okada, H. Narita, Y. Asaka, Y. Sasaki (1995)
Location of light‐repressible, small GTP‐binding protein of the YPT/rab family in the growing zone of etiolated pea stemsPlant Cell, 92
-
Yuko Sasaki-Sekimoto, N. Taki, T. Obayashi, M. Aono, Fuminori Matsumoto, N. Sakurai, Hideyuki Suzuki, M. Hirai, M. Noji, K. Saito, T. Masuda, K. Takamiya, D. Shibata, H. Ohta (2005)
Coordinated activation of metabolic pathways for antioxidants and defence compounds by jasmonates and their roles in stress tolerance in Arabidopsis.The Plant journal : for cell and molecular biology, 44 4
-
F. Katagiri, R. Thilmony, S.Y. He (2002)
The Arabidopsis BookPlant Cell
-
J. Leung, M. Bouvier-Durand, P. Morris, D. Guerrier, F. Chefdor, J. Giraudat (1994)
Arabidopsis ABA response gene ABI1: features of a calcium-modulated protein phosphatase.Science, 264 5164
-
Zheng-Hui He, I. Cheeseman, Deze He, B. Kohorn (1999)
A cluster of five cell wall-associated receptor kinase genes, Wak1–5, are expressed in specific organs of ArabidopsisPlant Molecular Biology, 39
-
T. Kakimoto (2003b)
Perception and signal transduction of cytokininsProc. Natl Acad. Sci. USA, 54
-
L. Gómez‐Gómez, G., T. Boller (1999)
A single locus determines sensitivity to bacterial flagellin in Arabidopsis thalianaMol. Cell, 18
-
Jiayang Li, Shouyi Chen, Lihuang Zhu, Robert, 1., Last (1995)
Isolation of cDNAs Encoding the Tryptophan Pathway Enzyme Indole-3-Glycerol Phosphate Synthase from Arabidopsis thaliana, 108
-
L. Navarro, C. Zipfel, O. Rowland, I. Keller, S. Robatzek, T. Boller, J.D. Jones (2004)
The transcriptional innate immune response to flg22. Interplay and overlap with Avr gene‐dependent defense responses and bacterial pathogenesisPlant Cell, 135
-
C. Zipfel, S. Robatzek, Lionel Navarro, E. Oakeley, Jonathan Jones, G. Felix, T. Boller (2004)
Bacterial disease resistance in Arabidopsis through flagellin perceptionNature, 428
-
D. Brooks, G. Hernández-Guzmán, A. Kloek, F. Alarcón-Chaidez, A. Sreedharan, V. Rangaswamy, A. Peñaloza-Vázquez, C. Bender, B. Kunkel (2004)
Identification and characterization of a well-defined series of coronatine biosynthetic mutants of Pseudomonas syringae pv. tomato DC3000.Molecular plant-microbe interactions : MPMI, 17 2
-
A. Devoto, M. Nieto-Rostro, D. Xie, Christine Ellis, Rebecca Harmston, Elaine Patrick, Jackie Davis, L. Sherratt, M. Coleman, J. Turner (2002)
COI1 links jasmonate signalling and fertility to the SCF ubiquitin-ligase complex in Arabidopsis.The Plant journal : for cell and molecular biology, 32 4
-
Y. Zhao, A.K. Hull, N.R. Gupta, K.A. Goss, J. Alonso, J.R. Ecker, J. Normanly, J. Chory, J.L. Celenza (2002)
Trp‐dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3Plant Cell, 16
-
T. Kakimoto (2003)
Biosynthesis of cytokininsJournal of Plant Research, 116
-
Yunde Zhao, A. Hull, Neeru Gupta, Kendrick Goss, J. Alonso, J. Ecker, J. Normanly, J. Chory, J. Celenza (2002)
Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3.Genes & development, 16 23
-
K. Greve, T. La Cour, M.K. Jensen, F.M. Poulsen, K. Skriver (2003)
Interactions between plant RING‐H2 and plant‐specific NAC (NAM/ATAF1/2/CUC2) proteins: RING‐H2 molecular specificity and cellular localizationInfect. Immun., 371
-
C.M. Gachon, M. Langlois‐Meurinne, Y. Henry, P. Saindrenan (2005)
Transcriptional co‐regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implicationsMol. Plant Microbe Interact., 58
-
G. Hagen, T. Guilfoyle (2002)
Auxin-responsive gene expression: genes, promoters and regulatory factorsPlant Molecular Biology, 49
-
A. Peñaloza-Vázquez, Gail Preston, A. Collmer, C. Bender (2000)
Regulatory interactions between the Hrp type III protein secretion system and coronatine biosynthesis in Pseudomonas syringae pv. tomato DC3000.Microbiology, 146 ( Pt 10)
-
N. Zhou, Tina Tootle, J. Glazebrook (1999)
Arabidopsis PAD3, a Gene Required for Camalexin Biosynthesis, Encodes a Putative Cytochrome P450 MonooxygenasePlant Cell, 11
-
C. Nawrath, Silvia Heck, N. Parinthawong, J. Metraux (2002)
EDS5, an Essential Component of Salicylic Acid–Dependent Signaling for Disease Resistance in Arabidopsis, Is a Member of the MATE Transporter Family Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010376.The Plant Cell Online, 14
-
Wenqi Hu, Jing Yuan, Q. Jin, Patrick Hart, Shengyang He (2001)
Immunogold labeling of Hrp pili of Pseudomonas syringae pv. tomato assembled in minimal medium and in planta.Molecular plant-microbe interactions : MPMI, 14 2
-
E. Radwanski, Jianmin Zhao, R. Last (1995)
Arabidopsis thaliana tryptophan synthase alpha: Gene cloning, expression, and subunit interactionMolecular and General Genetics MGG, 248
-
S. Vorwerk, S. Biernacki, H. Hillebrand, I. Janzik, A. Müller, E. Weiler, M. Piotrowski (2001)
Enzymatic characterization of the recombinant Arabidopsis thaliana nitrilase subfamily encoded by the NIT2/NIT1/NIT3-gene clusterPlanta, 212
-
M. Eisen, P. Spellman, P. Brown, D. Botstein (1998)
Cluster analysis and display of genome-wide expression patterns.Proceedings of the National Academy of Sciences of the United States of America, 95 25
-
K. Niyogi, R. Last, G. Fink, B. Keith (1993)
Suppressors of trp1 fluorescence identify a new arabidopsis gene, TRP4, encoding the anthranilate synthase beta subunit.The Plant cell, 5
-
Dana Zeidler, U. Zähringer, I. Gerber, I. Dubery, T. Hartung, W. Bors, P. Hutzler, J. Durner (2004)
Innate immunity in Arabidopsis thaliana: lipopolysaccharides activate nitric oxide synthase (NOS) and induce defense genes.Proceedings of the National Academy of Sciences of the United States of America, 101 44
-
D.E. Fouts, R.B. Abramovitch, J.R. Alfano (2002)
Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factorPlant J., 99
-
A. Kloek, M. Verbsky, Shashi Sharma, J. Schoelz, J. Vogel, D. Klessig, B. Kunkel (2001)
Resistance to Pseudomonas syringae conferred by an Arabidopsis thaliana coronatine-insensitive (coi1) mutation occurs through two distinct mechanisms.The Plant journal : for cell and molecular biology, 26 5
-
N. Taki, Y. Sasaki‐Sekimoto, T. Obayashi (2005)
12‐oxo‐phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound‐induced gene expression in ArabidopsisPlant Cell, 139
-
F. Gunzer, U. Bohn, S. Fuchs, I. Muhldorfer, J. Hacker, S. Tzipori, A. Donohue‐Rolfe (1998)
Construction and characterization of an isogenic slt‐ii deletion mutant of enterohemorrhagic Escherichia coliPlant Mol. Biol., 66
-
Philip O'Donnell, E. Schmelz, Patricia Moussatche, Steven Lund, Jeffery Jones, H. Klee (2003)
Susceptible to intolerance--a range of hormonal actions in a susceptible Arabidopsis pathogen response.The Plant journal : for cell and molecular biology, 33 2
-
S. Mittal, Keith Davis (1995)
Role of the phytotoxin coronatine in the infection of Arabidopsis thaliana by Pseudomonas syringae pv. tomato.Molecular plant-microbe interactions : MPMI, 8 1
-
P. Hauck, R. Thilmony, S.Y. He (2003)
A Pseudomonas syringae type III effector suppresses cell‐wall based extracellular defense in susceptible Arabidopsis plantsDNA Res., 100
-
Maureen Whalen, R. Innes, A. Bent, B. Staskawicz (1991)
Identification of Pseudomonas syringae pathogens of Arabidopsis and a bacterial locus determining avirulence on both Arabidopsis and soybean.The Plant cell, 3
-
K.K. Niyogi, G.R. Fink (1992)
Two anthranilate synthase genes in Arabidopsis: defense‐related regulation of the tryptophan pathwayProc. Natl Acad. Sci. USA, 4
-
A. Falk, B. Feys, Louise Frost, Jonathan Jones, Michael Daniels, J. Parker (1999)
EDS1, an essential component of R gene-mediated disease resistance in Arabidopsis has homology to eukaryotic lipases.Proceedings of the National Academy of Sciences of the United States of America, 96 6
-
Gromoslaw Smolen, Laura Pawlowski, S. Wilensky, J. Bender (2002)
Dominant alleles of the basic helix-loop-helix transcription factor ATR2 activate stress-responsive genes in Arabidopsis.Genetics, 161 3
-
Bart Feys, Celso Benedetti, C. Penfold, John Turner (1994)
Arabidopsis Mutants Selected for Resistance to the Phytotoxin Coronatine Are Male Sterile, Insensitive to Methyl Jasmonate, and Resistant to a Bacterial Pathogen.The Plant cell, 6
-
T. Kakimoto (2003)
Perception and signal transduction of cytokinins.Annual review of plant biology, 54
-
A. Collmer, M. Lindeberg, Tanja Petnicki‐Ocwieja, David Schneider, J. Alfano (2002)
Genomic mining type III secretion system effectors in Pseudomonas syringae yields new picks for all TTSS prospectors.Trends in microbiology, 10 10
-
Y. Tao, Z. Xie, W. Chen, J. Glazebrook, H.S. Chang, B. Han, T. Zhu, G. Zou, F. Katagiri (2003)
Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringaePlant Cell, 15
-
W. Hu, Q.‐L. Jin, P. Hart, S.Y. He (2001)
Immunogold labelling of Hrp pili of Pseudomonas syringae pv. tomato CD3000 in minimal medium and in plantaPlant J., 14
-
T. Kakimoto (2003a)
Biosynthesis of cytokininsAnnu. Rev. Plant Biol., 116
-
S.S. Hirano, C.D. Upper (2000)
Bacteria in the leaf ecosystem with emphasis on Pseudomonas syringae– a pathogen, ice nucleus, and epiphyteMol. Plant-Microbe Interact, 64
-
Q. Jin, R. Thilmony, J. Zwiesler‐Vollick, S.Y. He (2003)
Type III protein secretion in Pseudomonas syringaeProc. Natl Acad. Sci. USA, 5
-
A.S. Olsson, P. Engstrom, E. Soderman (2004)
The homeobox genes AtHB12 and AtHB7 encode potential regulators of growth in response to water deficit in ArabidopsisMol. Gen. Genet., 55
-
Y. Okushima, P. Overvoorde, K. Arima, J. Alonso, April Chan, Charlie Chang, J. Ecker, Beth Hughes, Amy Lui, Diana Nguyen, C. Onodera, H. Quach, Alison Smith, Guixia Yu, A. Theologis (2005)
Functional Genomic Analysis of the AUXIN RESPONSE FACTOR Gene Family Members in Arabidopsis thaliana: Unique and Overlapping Functions of ARF7 and ARF19w⃞The Plant Cell Online, 17
-
F. Gunzer, U. Bohn, S. Fuchs, I. Mühldorfer, J. Hacker, S. Tzipori, A. Donohue‐Rolfe (1998)
Construction and Characterization of an Isogenicslt-ii Deletion Mutant of EnterohemorrhagicEscherichia coliInfection and Immunity, 66
-
V.G. Tusher, R. Tibshirani, G. Chu (2001)
Significance analysis of microarrays applied to the ionizing radiation responsePlant Physiol., 98
-
R.R. Finkelstein, C.D. Rock (2002)
The Arabidopsis BookProc. Natl Acad. Sci. USA
-
Jing Yuan, Shengyang He (1996)
The Pseudomonas syringae Hrp regulation and secretion system controls the production and secretion of multiple extracellular proteinsJournal of Bacteriology, 178
-
P.E. Staswick, B. Serban, M. Rowe, I. Tiryaki, M.T. Maldonado, M.C. Maldonado, W. Suza (2005)
Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole‐3‐acetic acidPlant Physiol., 17
-
P. Staswick, B. Șerban, M. Rowe, I. Tiryaki, M. Maldonado, Mitsa Maldonado, Walter Suza (2005)
Characterization of an Arabidopsis Enzyme Family That Conjugates Amino Acids to Indole-3-Acetic Acidw⃞The Plant Cell Online, 17
-
K. Nomura, M. Melotto, S. He (2005)
Suppression of host defense in compatible plant-Pseudomonas syringae interactions.Current opinion in plant biology, 8 4
-
J. Celenza, Juan Quiel, Gromoslaw Smolen, Houra Merrikh, A. Silvestro, J. Normanly, J. Bender (2005)
The Arabidopsis ATR1 Myb Transcription Factor Controls Indolic Glucosinolate Homeostasis1Plant Physiology, 137
-
F. Katagiri, R. Thilmony, S. He (2002)
The Arabidopsis Thaliana-Pseudomonas Syringae InteractionThe arabidopsis book, 1
-
Celso Benedetti, Cinthia Costa, S. Turcinelli, Paulo Arruda (1998)
Differential expression of a novel gene in response to coronatine, methyl jasmonate, and wounding in the Coi1 mutant of Arabidopsis.Plant physiology, 116 3
-
Celso Benedetti, D. Xie, John Turner (1995)
COI1-Dependent Expression of an Arabidopsis Vegetative Storage Protein in Flowers and Siliques and in Response to Coronatine or Methyl Jasmonate, 109
-
R. Weigel, U. Pfitzner, C. Gatz (2005)
Interaction of NIMIN1 with NPR1 Modulates PR Gene Expression in ArabidopsisThe Plant Cell Online, 17
-
Gernot Kunze, C. Zipfel, S. Robatzek, K. Niehaus, T. Boller, G. Felix (2004)
The N Terminus of Bacterial Elongation Factor Tu Elicits Innate Immunity in Arabidopsis PlantsThe Plant Cell Online, 16
-
R. Swarup, J. Kargul, A. Marchant, Daniel Zadik, Abidur Rahman, R. Mills, Anthony Yemm, S. May, L. Williams, P. Millner, S. Tsurumi, I. Moore, R. Napier, I. Kerr, M. Bennett (2004)
Structure-Function Analysis of the Presumptive Arabidopsis Auxin Permease AUX1w⃞The Plant Cell Online, 16
-
Sixue Chen, E. Glawischnig, K. Jørgensen, P. Naur, B. Jørgensen, C. Olsen, C. Hansen, H. Rasmussen, J. Pickett, B. Halkier (2003)
CYP79F1 and CYP79F2 have distinct functions in the biosynthesis of aliphatic glucosinolates in Arabidopsis.The Plant journal : for cell and molecular biology, 33 5
-
Rex Cole, Lukáš Synek, V. Žárský, J. Fowler (2005)
SEC8, a Subunit of the Putative Arabidopsis Exocyst Complex, Facilitates Pollen Germination and Competitive Pollen Tube Growth1[w]Plant Physiology, 138
-
J. Greenberg, B. Vinatzer (2003)
Identifying type III effectors of plant pathogens and analyzing their interaction with plant cells.Current opinion in microbiology, 6 1
-
C. Nawrath, S. Heck, N. Parinthawong, J.P. Metraux (2002)
EDS5, an essential component of salicylic acid‐dependent signaling for disease resistance in Arabidopsis, is a member of the MATE transporter familyPlant Cell, 14
-
D. Jirage, T.L. Tootle, T.L. Reuber, L.N. Frost, B.J. Feys, J.E. Parker, F.M. Ausubel, J. Glazebrook (1999)
Arabidopsis thaliana PAD4 encodes a lipase‐like gene that is important for salicylic acid signalingJ. Plant Res., 96
-
V. Vernoud, A. Horton, Zhenbiao Yang, E. Nielsen (2003)
Analysis of the Small GTPase Gene Superfamily of Arabidopsis1Plant Physiology, 131
-
S.-W. Ma, V. Morris, D. Cuppels (1991)
Characterization of a DNA region required for production of the phytotoxin coronatine by Pseudomonas syringae pv. tomatoMolecular Plant-microbe Interactions, 4
-
Krestine Greve, T. Cour, M. Jensen, F. Poulsen, K. Skriver (2003)
Interactions between plant RING-H2 and plant-specific NAC (NAM/ATAF1/2/CUC2) proteins: RING-H2 molecular specificity and cellular localization.The Biochemical journal, 371 Pt 1
-
E.R. Radwanski, J. Zhao, R.L. Last (1995)
Arabidopsis thaliana tryptophan synthase alpha: gene cloning, expression, and subunit interactionPlant Cell, 248
-
S. Uppalapati, P. Ayoubi, Hua Weng, D. Palmer, R. Mitchell, W. Jones, C. Bender (2005)
The phytotoxin coronatine and methyl jasmonate impact multiple phytohormone pathways in tomato.The Plant journal : for cell and molecular biology, 42 2
-
J.T. Greenberg, B.A. Vinatzer (2003)
Identifying type III effectors of plant pathogens and analyzing their interaction with plant cellsBiochem. J., 6
-
S. Iuchi, M. Kobayashi, T. Taji, M. Naramoto, M. Seki, T. Kato, S. Tabata, Y. Kakubari, K. Yamaguchi‐Shinozaki, K. Shinozaki (2001)
Regulation of drought tolerance by gene manipulation of 9‐cis‐epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in ArabidopsisMicrobes Infect., 27
-
D. Jirage, Tina Tootle, Reuber Tl, Reuber Tl, Frost Ln, Feys Bj, P. Je, F. Ausubel, F. Ausubel, J. Glazebrook, J. Glazebrook (1999)
Arabidopsis thaliana PAD4 encodes a lipase-like gene that is important for salicylic acid signaling.Proceedings of the National Academy of Sciences of the United States of America, 96 23
-
K. Miyawaki, M. Matsumoto‐Kitano, T. Kakimoto (2004)
Expression of cytokinin biosynthetic isopentenyltransferase genes in Arabidopsis: tissue specificity and regulation by auxin, cytokinin, and nitratePlant Physiol., 37
-
L. Gómez‐Gómez, T. Boller (2000)
FLS2: an LRR receptor‐like kinase involved in the perception of the bacterial elicitor flagellin in ArabidopsisCurr. Opin. Microbiol., 5
-
C. Bender, F. Alarcón-Chaidez, D. Gross (1999)
Pseudomonas syringae Phytotoxins: Mode of Action, Regulation, and Biosynthesis by Peptide and Polyketide SynthetasesMicrobiology and Molecular Biology Reviews, 63
-
B. Usadel, A. Nagel, O. Thimm, Henning Redestig, O. Blaesing, N. Palacios-Rojas, J. Selbig, Jan Hannemann, M. Piques, D. Steinhauser, W. Scheible, Y. Gibon, R. Morcuende, Daniel Weicht, S. Meyer, M. Stitt (2005)
Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses1Plant Physiology, 138
-
M. Torres, P. Sanchez, I. Fernandez‐Delmond, M. Grant (2003)
Expression profiling of the host response to bacterial infection: the transition from basal to induced defense responses in RPM1‐mediated resistanceProc. Natl Acad. Sci. USA, 33
-
K. Niyogi, G. Fink (1992)
Two anthranilate synthase genes in Arabidopsis: defense-related regulation of the tryptophan pathway.The Plant cell, 4
-
S.R. Uppalapati, P. Ayoubi, H. Weng, D.A. Palmer, R.E. Mitchell, W. Jones, C.L. Bender (2005)
The phytotoxin coronatine and methyl jasmonate impact multiple phytohormone pathways in tomatoPlant Physiol., 42
-
E. Bell, R. Creelman, J. Mullet (1995)
A chloroplast lipoxygenase is required for wound-induced jasmonic acid accumulation in Arabidopsis.Proceedings of the National Academy of Sciences of the United States of America, 92 19
-
T. Eulgem, V. Weigman, Hur-Song Chang, J. McDowell, E. Holub, J. Glazebrook, T. Zhu, J. Dangl (2004)
Gene Expression Signatures from Three Genetically Separable Resistance Gene Signaling Pathways for Downy Mildew Resistance1[w]Plant Physiology, 135
-
W. Wei, A. Plovanich‐Jones, W.‐L. Deng, A. Collmer, H.‐C. Huang, S.Y. He (2000)
The gene coding for the structural protein of the Hrp pilus is required for type III secretion of the Hrp and Avr proteins in Pseudomonas syringae pv. tomatoPlant Cell, 97
-
D. Kliebenstein, Virginia Lambrix, M. Reichelt, J. Gershenzon, T. Mitchell-Olds (2001)
Gene Duplication in the Diversification of Secondary Metabolism: Tandem 2-Oxoglutarate–Dependent Dioxygenases Control Glucosinolate Biosynthesis in ArabidopsisPlant Cell, 13
-
Tetsuya Hayashi, K. Makino, M. Ohnishi, K. Kurokawa, K. Ishii, K. Yokoyama, Chang-Gyun Han, E. Ohtsubo, K. Nakayama, T. Murata, Masashi Tanaka, T. Tobe, T. Iida, H. Takami, T. Honda, C. Sasakawa, N. Ogasawara, T. Yasunaga, S. Kuhara, T. Shiba, M. Hattori, H. Shinagawa (2001)
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.DNA research : an international journal for rapid publication of reports on genes and genomes, 8 1
-
Brian Keith, Xinnian Dong, Frederick Ausubel, Gerald Fink (1991)
Differential induction of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase genes in Arabidopsis thaliana by wounding and pathogenic attack.Proceedings of the National Academy of Sciences of the United States of America, 88 19
-
R. Swarup, J. Kargul, A. Marchant (2004)
Structure–function analysis of the presumptive Arabidopsis auxin permease AUX1Plant Physiol., 16
-
E. Söderman, J. Mattsson, P. Engström (1996)
The Arabidopsis homeobox gene ATHB-7 is induced by water deficit and by abscisic acid.The Plant journal : for cell and molecular biology, 10 2
-
Paula Hauck, R. Thilmony, S. He (2003)
A Pseudomonas syringae type III effector suppresses cell wall-based extracellular defense in susceptible Arabidopsis plantsProceedings of the National Academy of Sciences of the United States of America, 100
-
T. Asai, Guillaume Tena, J. Plotnikova, M. Willmann, W. Chiu, L. Gómez-Gómez, T. Boller, F. Ausubel, J. Sheen (2002)
MAP kinase signalling cascade in Arabidopsis innate immunityNature, 415
-
E. Glickmann, Louis Gardan, Sylvie Jacquet, Shafik Hussain, M. Elasri, A. Petit, Yves Dessaux (1998)
Auxin production is a common feature of most pathovars of Pseudomonas syringae.Molecular plant-microbe interactions : MPMI, 11 2
-
K. Nomura, S. He (2005)
Powerful screens for bacterial virulence proteins.Proceedings of the National Academy of Sciences of the United States of America, 102 10
-
F. Schaller, C. Biesgen, C. Müssig, T. Altmann, E. Weiler (2000)
12-Oxophytodienoate reductase 3 (OPR3) is the isoenzyme involved in jasmonate biosynthesisPlanta, 210
-
E.J. Yang, Y.A. Oh, E.S. Lee, A.R. Park, S.K. Cho, Y.J. Yoo, O.K. Park (2003)
Oxygen‐evolving enhancer protein 2 is phosphorylated by glycine‐rich protein 3/wall‐associated kinase 1 in ArabidopsisProc. Natl Acad. Sci. USA, 305
-
G. Hagen, T. Guilfoyle (2002)
Auxin‐responsive gene expression: genes, promoters and regulatory factorsProc. Natl Acad. Sci. USA, 49
-
O. Thimm, O. Bläsing, Y. Gibon, A. Nagel, S. Meyer, Peter Krüger, J. Selbig, Lukas Müller, S. Rhee, M. Stitt (2004)
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.The Plant journal : for cell and molecular biology, 37 6
-
You-Xing Zhao, R. Thilmony, C. Bender, A. Schaller, S. He, G. Howe (2003)
Virulence systems of Pseudomonas syringae pv. tomato promote bacterial speck disease in tomato by targeting the jasmonate signaling pathway.The Plant journal : for cell and molecular biology, 36 4
-
T. Tantikanjana, M. Mikkelsen, M. Hussain, B. Halkier, V. Sundaresan (2004)
Functional Analysis of the Tandem-Duplicated P450 Genes SPS/BUS/CYP79F1 and CYP79F2 in Glucosinolate Biosynthesis and Plant Development by Ds Transposition-Generated Double Mutants1Plant Physiology, 135
-
M. Wildermuth, J. Dewdney, Gang Wu, F. Ausubel (2001)
Isochorismate synthase is required to synthesize salicylic acid for plant defenceNature, 414
-
Linghui Xu, Fuquan Liu, E. Lechner, P. Genschik, W. Crosby, Hong Ma, W. Peng, Dafang Huang, D. Xie (2002)
The SCF(COI1) ubiquitin-ligase complexes are required for jasmonate response in Arabidopsis.The Plant cell, 14 8
-
G. Felix, Juliana Duran, Sigrid Volko, T. Boller (1999)
Plants have a sensitive perception system for the most conserved domain of bacterial flagellin.The Plant journal : for cell and molecular biology, 18 3
-
Yi Tao, Zhiyi Xie, W. Chen, J. Glazebrook, Hur-Song Chang, B. Han, T. Zhu, Guangzhou Zou, F. Katagiri (2003)
Quantitative Nature of Arabidopsis Responses during Compatible and Incompatible Interactions with the Bacterial Pathogen Pseudomonas syringae Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.007591.The Plant Cell Online, 15
-
D. Zeidler, U. Zähringer, I. Gerber, I. Dubery, T. Hartung, W. Bors, P. Hutzler, J. Durner (2004)
Innate immunity in Arabidopsis thaliana: lipopolysaccharides activate nitric oxide synthase (NOS) and induced defense genesPlant J., 101
-
S. Iuchi, Masatomo Kobayashi, T. Taji, M. Naramoto, M. Seki, Tomohiko Kato, S. Tabata, Y. Kakubari, K. Yamaguchi-Shinozaki, K. Shinozaki (2001)
Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in Arabidopsis.The Plant journal : for cell and molecular biology, 27 4
-
L. Tran, K. Nakashima, Y. Sakuma, S. Simpson, Y. Fujita, K. Maruyama, M. Fujita, M. Seki, K. Shinozaki, K. Yamaguchi-Shinozaki (2004)
Isolation and Functional Analysis of Arabidopsis Stress-Inducible NAC Transcription Factors That Bind to a Drought-Responsive cis-Element in the early responsive to dehydration stress 1 Promoterw⃞The Plant Cell Online, 16
-
C. Buell, V. Joardar, M. Lindeberg, J. Selengut, I. Paulsen, M. Gwinn, R. Dodson, R. Deboy, A. Durkin, J. Kolonay, R. Madupu, Sean Daugherty, L. Brinkac, M. Beanan, D. Haft, W. Nelson, Tanja Davidsen, Nikhat Zafar, Liwei Zhou, Jia Liu, Q. Yuan, H. Khouri, N. Fedorova, B. Tran, Daniel Russell, Kristi Berry, T. Utterback, S. Aken, T. Feldblyum, M. D'Ascenzo, W. Deng, A. Ramos, J. Alfano, S. Cartinhour, A. Chatterjee, T. Delaney, S. Lazarowitz, G. Martin, David Schneider, Xiaoyan Tang, C. Bender, O. White, C. Fraser, A. Collmer (2003)
The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000Proceedings of the National Academy of Sciences of the United States of America, 100
-
R. Finkelstein, C. Rock (2002)
Abscisic Acid Biosynthesis and ResponseThe arabidopsis book, 1
-
Reuber Tl, F. Ausubel (1996)
Isolation of Arabidopsis genes that differentiate between resistance responses mediated by the RPS2 and RPM1 disease resistance genes.The Plant cell, 8
-
E. Glickmann, L. Gardan, S. Jacquet, S. Hussain, M. Elasri, A. Petit, Y. Dessaux (1998)
Auxin production is a common feature of most pathovars of Pseudomonas syringaePlant J, 11
-
J. Borevitz, Yiji Xia, J. Blount, R. Dixon, C. Lamb (2000)
Activation Tagging Identifies a Conserved MYB Regulator of Phenylpropanoid BiosynthesisPlant Cell, 12
-
C. Bestwick, Mark Bennett, John Mansfield (1995)
Hrp Mutant of Pseudomonas syringae pv phaseolicola Induces Cell Wall Alterations but Not Membrane Damage Leading to the Hypersensitive Reaction in Lettuce, 108
-
J. Yuan, S.Y. He (1996)
The Pseudomonas syringae Hrp regulation and secretion system controls the production and secretion of multiple extracellular proteinsGenes Dev., 178
-
Birgit Reintanz, M. Lehnen, M. Reichelt, J. Gershenzon, M. Kowalczyk, G. Sandberg, M. Godde, Rainer Uhl, K. Palme (2001)
bus, a Bushy Arabidopsis CYP79F1 Knockout Mutant with Abolished Synthesis of Short-Chain Aliphatic GlucosinolatesPlant Cell, 13
-
S. Mittal, K.R. Davis (1995)
Role of the phytotoxin coronatine in the infection of Arabidopsis thaliana by Pseudomonas syringae pv. tomatoProc. Natl Acad. Sci. USA, 8
-
Yi-kun He, Jiayang Li (2001)
Differential expression of triplicate phosphoribosylanthranilate isomerase isogenes in the tryptophan biosynthetic pathway of Arabidopsis thaliana (L.) Heynh.Planta, 212
-
S.Y. He, K. Nomura, S. Whittam (2004)
Type III protein secretion mechanisms in mammalian and plant pathogensMicrobiol. Mol. Biol. Rev., 1694
-
K. Nomura, M. Melotto, S.Y. He (2005)
Suppression of host defense in compatible plant–Pseudomonas syringae interactionsPlant Cell, 8
-
K. Nomura, S.Y. He (2005)
Powerful screens for bacterial virulence proteinsPlant J., 102
-
Wensheng Wei, A. Plovanich-Jones, Wen-Ling Deng, Q. Jin, A. Collmer, Hsiou‐Chen Huang, Sheng He (2000)
The gene coding for the Hrp pilus structural protein is required for type III secretion of Hrp and Avr proteins in Pseudomonas syringae pv. tomato.Proceedings of the National Academy of Sciences of the United States of America, 97 5
-
J. Wan, Mark Dunning, A. Bent (2002)
Probing plant-pathogen interactions and downstream defense signaling using DNA microarraysFunctional & Integrative Genomics, 2
-
A. Olsson, P. Engström, E. Söderman (2004)
The homeobox genes ATHB12 and ATHB7encode potential regulators of growth in response to water deficit in ArabidopsisPlant Molecular Biology, 55
-
S. Hirano, C. Upper (2000)
Bacteria in the Leaf Ecosystem with Emphasis onPseudomonas syringae—a Pathogen, Ice Nucleus, and EpiphyteMicrobiology and Molecular Biology Reviews, 64
-
Y. Nagano, Y. Okada, H. Narita, Y. Asaka, Y. Sasaki (1995)
Location of light-repressible, small GTP-binding protein of the YPT/rab family in the growing zone of etiolated pea stems.Proceedings of the National Academy of Sciences of the United States of America, 92 14
-
C. Gachon, M. Langlois-Meurinne, Y. Henry, P. Saindrenan (2005)
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implicationsPlant Molecular Biology, 58
-
T. Werner, V. Motyka, V. Laucou, R. Smets, H. Van Onckelen, T. Schmulling (2003)
Cytokinin‐deficient transgenic Arabidopsis plants show multiple developmental alterations indicating opposite functions of cytokinins in the regulation of shoot and root meristem activityNature, 15
-
T. Tsuchiya, H. Ohta, K. Okawa, A. Iwamatsu, H. Shimada, T. Masuda, K. Takamiya (1999)
Cloning of chlorophyllase, the key enzyme in chlorophyll degradation: finding of a lipase motif and the induction by methyl jasmonate.Proceedings of the National Academy of Sciences of the United States of America, 96 26
-
J. Leung, S. Merlot, J. Giraudat (1997)
The Arabidopsis ABSCISIC ACID-INSENSITIVE2 (ABI2) and ABI1 genes encode homologous protein phosphatases 2C involved in abscisic acid signal transduction.The Plant cell, 9
-
J. Leung, S. Merlot, J. Giraudat (1997)
The Arabidopsis ABSCISIC ACID‐INSENSITIVE 2 (ABI2) and ABI1 genes encode homologous protein phosphatases 2C involved in abscisic acid signal transductionPlant Physiol., 9
-
N. Taki, Yuko Sasaki-Sekimoto, T. Obayashi, A. Kikuta, Koichi Kobayashi, Takayuki Ainai, Kaori Yagi, N. Sakurai, Hideyuki Suzuki, T. Masuda, K. Takamiya, D. Shibata, Yuichi Kobayashi, H. Ohta (2005)
12-Oxo-Phytodienoic Acid Triggers Expression of a Distinct Set of Genes and Plays a Role in Wound-Induced Gene Expression in Arabidopsis1[w]Plant Physiology, 139
-
D. Fouts, R. Abramovitch, J. Alfano, A. Baldo, C. Buell, S. Cartinhour, A. Chatterjee, M. D'Ascenzo, M. Gwinn, S. Lazarowitz, Nai-Chun Lin, G. Martin, Amos Rehm, David Schneider, K. Dijk, Xiaoyan Tang, A. Collmer (2002)
Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factorProceedings of the National Academy of Sciences of the United States of America, 99
-
A. Lopukhina, Marcus Dettenberg, E. Weiler, H. Holländer-Czytko (2001)
Cloning and characterization of a coronatine-regulated tyrosine aminotransferase from Arabidopsis.Plant physiology, 126 4
-
Marta Torres, P. Sánchez, Isabelle Fernandez-Delmond, M. Grant (2003)
Expression profiling of the host response to bacterial infection: the transition from basal to induced defence responses in RPM1-mediated resistance.The Plant journal : for cell and molecular biology, 33 4
- Publisher
- Wiley
- Copyright
- Copyright © 2006 Wiley Subscription Services, Inc., A Wiley Company
- ISSN
- 0960-7412
- eISSN
- 1365-313X
- DOI
- 10.1111/j.1365-313X.2006.02725.x
- pmid
- 16553894
- Publisher site
- See Article on Publisher Site
Abstract
Pseudomonas syringae pv. tomato DC3000 (Pst) is a virulent pathogen that causes disease on tomato and Arabidopsis. The type III secretion system (TTSS) plays a key role in pathogenesis by translocating virulence effectors from the bacteria into the plant host cell, while the phytotoxin coronatine (COR) contributes to virulence and disease symptom development. Recent studies suggest that both the TTSS and COR are involved in the suppression of host basal defenses. However, little is known about the interplay between the host gene expression changes associated with basal defenses and the virulence activities of the TTSS and COR during infection. In this study, we used the Affymetrix full genome chip to determine the Arabidopsis transcriptome associated with basal defense to Pst DC3000 hrp mutants and the human pathogenic bacterium Escherichia coli O157:H7. We then used Pst DC3000 virulence mutants to characterize Arabidopsis transcriptional responses to the action of hrp‐regulated virulence factors (e.g. TTSS and COR) during bacterial infection. Additionally, we used bacterial fliC mutants to assess the role of the pathogen‐associated molecular pattern flagellin in induction of basal defense‐associated transcriptional responses. In total, our global gene expression analysis identified 2800 Arabidopsis genes that are reproducibly regulated in response to bacterial pathogen inoculation. Regulation of these genes provides a molecular signature for Arabidopsis basal defense to plant and human pathogenic bacteria, and illustrates both common and distinct global virulence effects of the TTSS, COR, and possibly other hrp‐regulated virulence factors during Pst DC3000 infection.
Journal
The Plant Journal – Wiley
Published: Apr 1, 2006
Keywords: ; ; ; ; ;