Access the full text.
Sign up today, get DeepDyve free for 14 days.
C. Hellmayr
The birds of the Rio Madeira.
C. Gascon, S. Lougheed, J. Bogart (1998)
Patterns of Genetic Population Differentiation in Four Species of Amazonian Frogs: A Test of the Riverine Barrier Hypothesis 1Biotropica, 30
Hans Berlepsch, C. Hellmayr (2005)
Studien über wenig bekannte Typen neotropischer VögelJournal für Ornithologie, 53
Curtis Burney, R. Brumfield (2009)
Ecology Predicts Levels of Genetic Differentiation in Neotropical BirdsThe American Naturalist, 174
G. Prance (1973)
Phytogeographic support tor the theory of Pleistocene forest refuges in the Amazon Basin, based on evidence from distribution patterns in Caryocaraceae, Chrysobalanaceae, Dichapetalaceae and LecythidaceaeActa Amazonica, 3
E. Latrubesse, M. Cozzuol, S. Silva-Caminha, C. Rigsby, M. Absy, C. Jaramillo (2010)
The Late Miocene paleogeography of the Amazon Basin and the evolution of the Amazon River systemEarth-Science Reviews, 99
Carla Sardelli (2005)
Variação geográfica e genética de Hemitriccus minor (Aves: Tyrannidae) na bacia do rio Madeira
M. Cummings (2004)
PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)]Dictionary of Bioinformatics and Computational Biology
(1998)
Rivers, refuges, and ridges: the geography of speciation of Amazonian mammals. Endless forms: modes and mechanisms of speciation
Philip Fearnside (2006)
Containing destruction from Brazil's Amazon highways: now is the time to give weight to the environment in decision-makingEnvironmental Conservation, 33
A. Wallace (1854)
On the Monkeys of the AmazonJournal of Natural History, 14
(2007)
Filogeografia comparativa de três espécies de pássaros na bacia do Rio Madeira, Amazônia, Brasil
Swati Patel, J. Weckstein, J. Patané, J. Bates, A. Aleixo (2011)
Temporal and spatial diversification of Pteroglossus araçaris (AVES: Ramphastidae) in the neotropics: constant rate of diversification does not support an increase in radiation during the Pleistocene.Molecular phylogenetics and evolution, 58 1
M. Isler, J. Alonso, P. Isler, T. Valqui, Alfredo Begazo, B. Whitney (2002)
REDISCOVERY OF A CRYPTIC SPECIES AND DESCRIPTION OF A NEW SUBSPECIES IN THE MYRMECIZA HEMIMELAENA COMPLEX (THAMNOPHILIDAE) OF THE NEOTROPICS, 119
Wallace Wallace (1852)
On the monkeys of the AmazonProceedings of the Zoological Society of London, 20
(2003)
Family Thamnophilidae (typical antbirds)
F. Tajima (1989)
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.Genetics, 123 3
P. Vanzolini, E. Williams (1970)
South american anoles: the geographic differentiation and evolution of the anolis Chrysolepis species group (Sauria, Iguanidae), 19
F. Ronquist, J. Huelsenbeck (2003)
MrBayes 3: Bayesian phylogenetic inference under mixed modelsBioinformatics, 19 12
R. Westaway (2006)
Late Cenozoic sedimentary sequences in Acre state, southwestern Amazonia: Fluvial or tidal? Deductions from the IGCP 449 fieldtripJournal of South American Earth Sciences, 21
J. Haffer (1969)
Speciation in amazonian forest birds.Science, 165 3889
J. Bates, J. Haffer, E. Grismer (2004)
Avian mitochondrial DNA sequence divergence across a headwater stream of the Rio Tapajós, a major Amazonian riverJournal of Ornithology, 145
(1932)
Studies of Peruvian birds. VI. The formicarian genera Myrmoborus and Myrmeciza in Peru
A. Drummond, A. Rambaut (2007)
BEAST: Bayesian evolutionary analysis by sampling treesBMC Evolutionary Biology, 7
E. Latrubesse (2002)
Evidence of quaternary palaeohydrological changes in middle Amazonia: The Aripuanã-Roosevelt and Jiparaná "fans", 129
C. Moritz, J. Patton, C. Schneider, T. Smith (2000)
DIVERSIFICATION OF RAINFOREST FAUNAS: An Integrated Molecular ApproachAnnual Review of Ecology, Evolution, and Systematics, 31
J. Patton, M. Silva, J. Malcolm (1994)
GENE GENEALOGY AND DIFFERENTIATION AMONG ARBOREAL SPINY RATS (RODENTIA: ECHIMYIDAE) OF THE AMAZON BASIN: A TEST OF THE RIVERINE BARRIER HYPOTHESISEvolution, 48
M. Head, P. Gibbard (2005)
Early-Middle Pleistocene transitions: an overview and recommendation for the defining boundaryGeological Society, London, Special Publications, 247
C. Hoorn, F. Wesselingh (2009)
Amazonia: Landscape and Species Evolution (A look into the past) || Molecular Studies and Phylogeography of Amazonian Tetrapods and their Relation to Geological and Climatic Models
S. Ho, B. Shapiro (2011)
Skyline‐plot methods for estimating demographic history from nucleotide sequencesMolecular Ecology Resources, 11
R. Zink (1997)
CHAPTER 11 – Phylogeographic Studies of North American Birds
J. Tobias, J. Bates, S. Hackett, N. Seddon (2008)
Comment on "The Latitudinal Gradient in Recent Speciation and Extinction Rates of Birds and Mammals"Science, 319
Árpád Nyári (2007)
Phylogeographic patterns, molecular and vocal differentiation, and species limits in Schiffornis turdina (Aves).Molecular phylogenetics and evolution, 44 1
(1997)
Phylogeographic studies of North American birds. Avian molecular evolution and systematics
Excoffier Excoffier, Laval Laval, Schneider Schneider (2005)
Arlequin v. 3.0: an integrated software package for population genetics data analysisEvolutionary Bioinformatics Online, 1
A. Aleixo, D. Rossetti (2007)
Avian gene trees, landscape evolution, and geology: towards a modern synthesis of Amazonian historical biogeography?Journal of Ornithology, 148
K. Tamura, J. Dudley, M. Nei, Sudhir Kumar (2007)
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.Molecular biology and evolution, 24 8
J. Weir, E. Bermingham, D. Schluter (2009)
The Great American Biotic Interchange in birdsProceedings of the National Academy of Sciences, 106
A. Drummond, A. Rambaut, B. Shapiro, O. Pybus (2005)
Bayesian coalescent inference of past population dynamics from molecular sequences.Molecular biology and evolution, 22 5
A. Antonelli, Adrián Quijada-Mascareñas, A. Crawford, J. Bates, P. Velazco, W. Wüster (2010)
Molecular Studies and Phylogeography of Amazonian Tetrapods and their Relation to Geological and Climatic Models
J. Sambrook, E. Fritsch, T. Maniatis (2001)
Molecular Cloning: A Laboratory Manual
Ju¨rgen Haffer (1997)
Alternative models of vertebrate speciation in Amazonia: an overviewBiodiversity & Conservation, 6
(2007)
Inventário ornitológico. Biodiversidade do médio Madeira: bases cientı́ficas para propostas de conservação (ed
R. Almeida-Filho, F. Miranda (2007)
Mega capture of the Rio Negro and formation of the Anavilhanas Archipelago, Central Amazônia, Brazil: Evidences in an SRTM digital elevation modelRemote Sensing of Environment, 110
K. Campbell, C. Frailey, L. Romero-Pittman (2006)
The Pan-Amazonian Ucayali Peneplain, late Neogene sedimentation in Amazonia, and the birth of the modern Amazon River systemPalaeogeography, Palaeoclimatology, Palaeoecology, 239
M. Clement, D. Posada, K. Crandall (2000)
TCS: a computer program to estimate gene genealogiesMolecular Ecology, 9
N. Seddon, J. Tobias (2007)
Song divergence at the edge of Amazonia: an empirical test of the peripatric speciation modelBiological Journal of The Linnean Society, 90
M. Silva, J. Patton (1993)
Amazonian phylogeography: mtDNA sequence variation in arboreal echimyid rodents (Caviomorpha).Molecular phylogenetics and evolution, 2 3
A. Mora, P. Baby, M. Roddaz, M. Parra, S. Brusset, Wilber Hermoza, N. Espurt (2010)
Tectonic History of the Andes and Sub‐Andean Zones: Implications for the Development of the Amazon Drainage Basin
V. Minin, Erik Bloomquist, M. Suchard (2008)
Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics.Molecular biology and evolution, 25 7
P. Fearnside (2002)
Avança Brasil: Environmental and Social Consequences of Brazil's Planned Infrastructure in AmazoniaEnvironmental Management, 30
J. Patané, J. Weckstein, A. Aleixo, J. Bates (2009)
Evolutionary history of Ramphastos toucans: molecular phylogenetics, temporal diversification, and biogeography.Molecular phylogenetics and evolution, 53 3
(1944)
Proceedings of the Zoological Society of LondonNature, 154
G. Hewitt (1999)
Post-glacial re-colonization of European biotaBiological Journal of The Linnean Society, 68
M. Isler, P. Isler, B. Whitney (2007)
SPECIES LIMITS IN ANTBIRDS (THAMNOPHILIDAE): THE WARBLING ANTBIRD (HYPOCNEMIS CANTATOR) COMPLEX, 124
G. Hewitt (2007)
Post-glacial recolonization of European biota
E. Willis (1969)
On the Behavior of Five Species of Rhegmatorhina, Ant-following Antbirds of the Amazon BasinThe Wilson Journal of Ornithology, 81
Greg Ewing, Allen Rodrigo (2007)
Estimating population parameters using the structured serial coalescent with Bayesian MCMC inference when some demes are hidden.Evolutionary Bioinformatics, 2
L. Excoffier, P. Smouse, J. Quattro (1992)
Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.Genetics, 131 2
(2009)
Knowledge gaps , research priorities , and future perspectives on bird conservation in the Brazilian Amazon . Important Bird Areas in Brazil , Part II – Amazonia , Cerrado , and Pantanal ( ed . by
Joaquim Wanderley‐Filho, J. Eiras, P. Cunha, P. Ven (2010)
The Paleozoic Solimões and Amazonas Basins and the Acre Foreland Basin of Brazil
D. Posada (2008)
jModelTest: phylogenetic model averaging.Molecular biology and evolution, 25 7
M. Nei (1987)
Molecular Evolutionary Genetics
(1967)
Rios e enchentes na Amazônia como obstáculo Pará a avifauna
R. Brumfield, Jose Tello, Jose Tello, Z. Cheviron, Matthew Carling, N. Crochet, K. Rosenberg (2007)
Phylogenetic conservatism and antiquity of a tropical specialization: army-ant-following in the typical antbirds (Thamnophilidae).Molecular phylogenetics and evolution, 45 1
Dilce Rossetti, Peter Toledo, A. Góes (2005)
New geological framework for Western Amazonia (Brazil) and implications for biogeography and evolutionQuaternary Research, 63
R. Holmes, F. Pitelka (1964)
Breeding Behavior and Taxonomic Relationships of the Curlew SandpiperThe Auk, 81
Z. Cheviron, S. Hackett, A. Capparella (2005)
Complex evolutionary history of a Neotropical lowland forest bird (Lepidothrix coronata) and its implications for historical hypotheses of the origin of Neotropical avian diversity.Molecular phylogenetics and evolution, 36 2
A. Whittaker (2009)
Pousada Rio Roosevelt: a provisional avifaunal inventory in south- western Amazonian Brazil, with information on life history, new distributional data and comments on taxonomy
Yunxin Fu (1997)
Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection.Genetics, 147 2
J. Hall, D. Harvey (2002)
THE PHYLOGEOGRAPHY OF AMAZONIA REVISITED: NEW EVIDENCE FROM RIODINID BUTTERFLIES, 56
J. Weir, D. Schluter (2008)
Calibrating the avian molecular clockMolecular Ecology, 17
N. Espurt, P. Baby, S. Brusset, M. Roddaz, Wilber Hermoza, J. Barbarand (2010)
The Nazca Ridge and uplift of the Fitzcarrald Arch : implications for regional geology in northern South America
(1998)
A new and distinctive species of marmoset (Callitrichidae, Primates
van Roosmalen van Roosmalen, van Roosmalen van Roosmalen, Mittermeier Mittermeier, da Fonseca da Fonseca (1998)
A new and distinctive species of marmoset (Callitrichidae, Primates) from the lower Rio Aripuanã, State of Amazonas, Central Brazilian AmazoniaGoeldiana Zoologia, 22
A. Aleixo (2004)
HISTORICAL DIVERSIFICATION OF A TERRA‐FIRME FOREST BIRD SUPERSPECIES: A PHYLOGEOGRAPHIC PERSPECTIVE ON THE ROLE OF DIFFERENT HYPOTHESES OF AMAZONIAN DIVERSIFICATIONEvolution, 58
J. Haffer, G. Prance (2001)
Climatic forcing of evolution in Amazonia during the Cenozoic: On the refuge theory of biotic differentiation, 16
J. Haffer (1997)
Contact Zones between Birds of Southern AmazoniaOrnithological Monographs
(1945)
A contribution to the ornithology of northern Bolivia
C. Ribas, A. Aleixo, A. Nogueira, C. Miyaki, J. Cracraft (2012)
A palaeobiogeographic model for biotic diversification within Amazonia over the past three million yearsProceedings of the Royal Society B: Biological Sciences, 279
Fu Fu (1997)
Statistical tests of neutrality against population growth, hitchhiking and background selectionGenetics, 147
Aim We examined patterns of spatial and temporal diversification of the Amazonian endemic chestnut‐tailed antbird, Mymeciza hemimelaena (Thamnophilidae), to evaluate the diversification of a widespread avian taxon across rivers that potentially represent major natural barriers. Location Lowland Amazonia. Methods Sequences of the mitochondrial ND2 and cytochrome b genes were investigated from 65 individuals distributed throughout the entire range of M. hemimelaena, and including the two currently valid subspecies M. h. hemimelaena and M. h. pallens. Based on a combination of phylogeographic tools, molecular dating, and population genetic methods, we reconstructed a spatio‐temporal scenario of diversification of M. hemimelaena in the Amazon. Results The data revealed three genetically divergent and monophyletic groups in M. hemimelaena, which can also be distinguished by a combination of morphological and vocal characters. Two of these clades correspond to the previously described taxa M. h. hemimelaena and M. h. pallens, which are separated by the upper Madeira River, a main Amazonian tributary. The third clade is distributed between the middle reaches of the Madeira River and the much smaller tributaries Jiparaná and Aripuanã, and, although currently treated as M. h. pallens, clearly constitutes an independent evolutionary lineage probably deserving separate species status. Molecular clock and population genetic analyses indicate that diversification in this group occurred throughout the Pleistocene, with demographic fluctuations assumed for M. h. hemimelaena and M. h. pallens. Main conclusions The findings implicate rivers as barriers driving diversification in the M. hemimelaena complex. Levels of mitochondrial DNA divergence and associated morphological and vocal traits support its division into at least three separate species with comparatively small ranges. The existence of a previously unrecognized lineage in the M. hemimelaena complex, and the high degree of population structuring found in M. h. hemimelaena underscore the pervasiveness of cryptic endemism throughout Amazonia and the importance of DNA‐based taxonomic and phylogeographic studies in providing the accurate estimates of diversity that are essential for conservation planning.
Journal of Biogeography – Wiley
Published: Aug 1, 2012
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.