Access the full text.
Sign up today, get DeepDyve free for 14 days.
SL Kosakovsky Pond, SDW Frost (2005)
Datamonkey: rapid detection of selective pressure on individual sites of codon alignmentsBioinformatics, 21
F Bai, J Yan, Z Qu, H Zhang, J Xu, M Ye, D Shen (2002)
Phylogenetic analysis reveals that a dwarfing disease on different cereal crops in China is due to rice black streaked dwarf virus (RBSDV)Virus Genes, 25
F Azuhata, I Uyeda, I Kimura, E Shikata (1993)
Close similarity between genome structures of rice black-streaked dwarf and maize rough dwarf virusesJ Gen Virol, 74
RG Milne, M Vas, RM Harding, R Marzachi, PPC Mertens (2005)
Virus taxonomy: eighth report of the international committee on taxonomy of viruses
HJ Liu, CH Wei, YW Zhong, Y Li (2007)
Rice black-streaked dwarf virus outer capsid protein P10 has self-interactions and forms oligomeric complexes in solutionVirus Res, 127
D Baú, A Martin, C Mooney, A Vullo, I Walsh, G Pollastri (2006)
Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteinsBMC Bioinformatics, 7
S Supyani, BI Hillman, N Suzuki (2007)
Baculovirus expression of the mycoreovirus-1 genome segments and identification of the guanylyltransferase-encoding segmentJ Gen Virol, 88
AJ Drummond, A Rambaut (2007)
BEAST: Bayesian evolutionary analysis by sampling treesBMC Evol Biol, 7
H Hibino (1996)
Biology and epidemiology of rice virusesAnn Rev Phytopathol, 34
J Maynard Smith (1992)
Analyzing the mosaic structure of genesJ Mol Evol, 34
DP Martin, P Lemey, M Lott, V Moulton, D Posada, P Lefeuvre (2010)
RDP3: a flexible and fast computer program for analyzing recombinationBioinformatics, 26
K Tamura, D Peterson, N Peterson, G Stecher, M Nei, S Kumar (2011)
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methodsMol Biol Evol, 28
MF Boni, D Posada, MW Feldman (2007)
An exact nonparametric method for inferring mosaic structure in sequence tripletsGenetics, 176
RG Milne, M Conti, V Lisa (1973)
Partial purification, structure and infectivity of complete maize rough dwarf virus particlesVirology, 53
M Padidam, S Sawyer, CM Fauquet (1999)
Possible emergence of new geminiviruses by frequent recombinationVirology, 265
J Chen, Q Zhu, C Yuan, Z Sun, X Li, T Zhou, Z Fan (2008)
Molecular characterization of Rice black-streaked dwarf virus isolates causing maize rough dwarf disease in ShandongActa Phytopathol Sin, 38
SX Chen, QY Zhang (2005)
Advance in researches on rice black-streaked dwarf disease and maize rough dwarf disease in ChinaActa Phytophylac Sin, 32
MJ Gibbs, JS Armstrong, AJ Gibbs (2000)
Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequencesBioinformatics, 16
Q Wang, T Tao, YJ Zhang, WQ Wu, DW Li, JL Yu, CG Han (2011)
Rice black-streaked dwarf virus P6 self-interacts to form punctuated, viroplasm-like structures in the cytoplasm and recruits viroplasm-associated protein P9–1Virol J, 8
HM Zhang, JP Chen, MJ Adams (2001)
Molecular characterisation of segments 1 to 6 of Rice black-streaked dwarf virus from China provides the complete genomeArch Virol, 146
S Fang, J Yan, J Feng, C Han, D Li, Y Liu (2001)
Identification of rice black-streaked dwarf fijivirus in maize with tough dwarf disease in ChinaArch Virol, 146
ZH Wang, SG Fang, JL Xu, LY Sun, DW Li, JL Yu (2003)
Sequence analysis of the complete genome of rice black-streaked dwarf virus isolated from maize with rough dwarf diseaseVirus Genes, 27
M Isogai, I Uyeda, BC Lee (1998)
Detection and assignment of proteins encoded by rice black streaked dwarf fijivirus S7, S8, S9 and S10J Gen Virol, 79
I Uyeda, I Kimura, E Shikata (1995)
Characterization of genome structure and establishment of vector cell lines for plant reovirusesAdv Virus Res, 45
AE Firth, JF Atkins (2009)
Analysis of the coding potential of the partially overlapping 3′ORF in segment 5 of the plant fijivirusesVirol J, 6
LD Zhang, ZH Wang, XB Wang, DW Li, CG Han, YF Zhai, J Yu (2005)
Two virus-encoded RNA silencing suppressors, P14 of Beet necrotic yellow vein virus and S6 of Rice black streak dwarf virusChin Sci Bull, 50
M Conti, O Lovisolo (1971)
Tubular structures associated with Maize Rough Dwarf Virus particles in crude extracts: electron microscopy studyJ Gen Virol, 13
D Martin, E Rybicki (2000)
RDP: detection of recombination amongst aligned sequencesBioinformatics, 16
D Posada, KA Crandall (2001)
Evaluation of methods for detecting recombination from DNA sequences: computer simulationsProc Natl Acad Sci, 98
HJ Liu, CH Wei, YW Zhong, Y Li (2007)
Rice black-streaked dwarf virus minor core protein P8 is a nuclear dimeric protein and represses transcription in tobacco protoplastsFEBS Lett, 581
DP Martin, D Posada, KA Crandall, C Williamson (2005)
A modified BOOTSCAN algorithm for automated identification of recombinant sequences and recombination breakpointsAIDS Res Hum Retroviruses, 21
Rice black-streaked dwarf virus (RBSDV) is the causal agent of rice black-streaked dwarf and maize rough dwarf diseases in China. The only open reading frame encoding the viral outer capsid protein on S10 RNA of 21 RBSDV isolates was sequenced for phylogenetic and recombination analysis. Four natural recombinants were detected, and the recombinant breakpoints were identified. In addition, the distribution of synonymous and non-synonymous nucleotide changes revealed that the virus had been evolving under purifying selection.
Archives of Virology – Springer Journals
Published: Jul 1, 2012
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.