Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/annual-reviews/plant-genome-engineering-with-sequence-specific-nucleases-Iiq4NPZaAy
References (131)
-
J. Boch, H. Scholze, S. Schornack, Angelika Landgraf, S. Hahn, S. Kay, T. Lahaye, A. Nickstadt, U. Bonas (2009)
Breaking the Code of DNA Binding Specificity of TAL-Type III EffectorsScience, 326
-
M. Chilton, Q. Que (2003)
Targeted Integration of T-DNA into the Tobacco Genome at Double-Stranded Breaks: New Insights on the Mechanism of T-DNA IntegrationPlant Physiology, 133
-
Ayhan Ayar, Sophie Wehrkamp‐Richter, Jean-Baptiste Laffaire, S. Goff, J. Levy, Sandrine Chaignon, Hajer Salmi, Alexandra Lepicard, C. Sallaud, M. Gallego, C. White, W. Paul (2013)
Gene targeting in maize by somatic ectopic recombination.Plant biotechnology journal, 11 3
-
P. Swoboda, S. Gal, B. Hohn, H. Puchta (1994)
Intrachromosomal homologous recombination in whole plants.The EMBO Journal, 13
-
T. Gaj, Jing Guo, Y. Kato, S. Sirk, C. Barbas (2012)
Targeted gene knockout by direct delivery of ZFN proteinsNature methods, 9
-
P. Waterhouse, M. Graham, Ming-Bo Wang (1998)
Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA.Proceedings of the National Academy of Sciences of the United States of America, 95 23
-
Hezi Shaked, C. Melamed-Bessudo, A. Levy (2005)
High-frequency gene targeting in Arabidopsis plants expressing the yeast RAD54 gene.Proceedings of the National Academy of Sciences of the United States of America, 102 34
-
S. Bultmann, Robert Morbitzer, Christine Schmidt, Katharina Thanisch, Fabio Spada, J. Elsaesser, T. Lahaye, H. Leonhardt (2012)
Targeted transcriptional activation of silent oct4 pluripotency gene by combining designer TALEs and inhibition of epigenetic modifiersNucleic Acids Research, 40
-
B. Stoddard (2011)
Homing endonucleases: from microbial genetic invaders to reagents for targeted DNA modification.Structure, 19 1
-
D. Segal, R. Beerli, P. Blancafort, B. Dreier, K. Effertz, A. Huber, B. Koksch, Caren Lund, L. Magnenat, David Valente, C. Barbas (2003)
Evaluation of a modular strategy for the construction of novel polydactyl zinc finger DNA-binding proteins.Biochemistry, 42 7
-
F. Fattah, Natalie Lichter, K. Fattah, Sehyun Oh, E. Hendrickson (2008)
Ku70, an essential gene, modulates the frequency of rAAV-mediated gene targeting in human somatic cellsProceedings of the National Academy of Sciences, 105
-
T. Mor, Y. Moon, K. Palmer, H. Mason (2003)
Geminivirus vectors for high-level expression of foreign proteins in plant cells.Biotechnology and bioengineering, 81 4
-
V. Pattanayak, C. Ramirez, J. Joung, David Liu (2011)
Revealing Off-Target Cleavage Specificities of Zinc Finger Nucleases by In Vitro SelectionNature methods, 8
-
H. Puchta, B. Dujon, B. Hohn (1996)
Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination.Proceedings of the National Academy of Sciences of the United States of America, 93 10
-
M. Szczepek, V. Brondani, J. Büchel, L. Serrano, D. Segal, T. Cathomen (2007)
Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleasesNature Biotechnology, 25
-
T. Tzfira, Leah Frankman, Manjusha Vaidya, V. Citovsky (2003)
Site-Specific Integration of Agrobacterium tumefaciens T-DNA via Double-Stranded Intermediates1Plant Physiology, 133
-
M. Bibikova, Kelly Beumer, J. Trautman, D. Carroll (2003)
Enhancing Gene Targeting with Designed Zinc Finger NucleasesScience, 300
-
C. Ramirez, Jonathan Foley, D. Wright, Felix Müller-Lerch, Shamim Rahman, T. Cornu, Ronnie Winfrey, Jeffry Sander, Fengli Fu, J. Townsend, T. Cathomen, D. Voytas, J. Joung (2008)
Unexpected failure rates for modular assembly of engineered zinc fingersNature Methods, 5
-
Koichi Watanabe, M. Pacher, Stefanie Dukowic, V. Schubert, H. Puchta, I. Schubert (2009)
The STRUCTURAL MAINTENANCE OF CHROMOSOMES 5/6 Complex Promotes Sister Chromatid Alignment and Homologous Recombination after DNA Damage in Arabidopsis thaliana[C][W]The Plant Cell Online, 21
-
H. Puchta (2004)
The repair of double-strand breaks in plants: mechanisms and consequences for genome evolution.Journal of experimental botany, 56 409
-
T. Thykjær, J. Finnemann, L. Schauser, L. Christensen, C. Poulsen, J. Stougaard (1997)
Gene targeting approaches using positive-negative selection and large flanking regionsPlant Molecular Biology, 35
-
D. Reyon, S. Tsai, Cyd Khayter, Jennifer Foden, Jeffry Sander, J. Joung (2012)
FLASH Assembly of TALENs Enables High-Throughput Genome EditingNature biotechnology, 30
-
Charles Cai, Y. Doyon, W. Ainley, Jeffrey Miller, Russell Dekelver, E. Moehle, Jeremy Rock, Ya-Li Lee, R. Garrison, L. Schulenberg, Ryan Blue, Andrew Worden, L. Baker, F. Faraji, Lei Zhang, M. Holmes, E. Rebar, T. Collingwood, B. Rubin-Wilson, Philip Gregory, F. Urnov, J. Petolino (2009)
Targeted transgene integration in plant cells using designed zinc finger nucleasesPlant Molecular Biology, 69
-
Neville Sanjana, Le Cong, Yang Zhou, Margaret Cunniff, G. Feng, Feng Zhang (2012)
A transcription activator-like effector toolbox for genome engineeringNature Protocols, 7
-
Andriy Tovkach, Vardit Zeevi, T. Tzfira (2009)
A toolbox and procedural notes for characterizing novel zinc finger nucleases for genome editing in plant cells.The Plant journal : for cell and molecular biology, 57 4
-
R. Offringa, M. Groot, H. Haagsman, M. Does, P. Elzen, P. Hooykaas (1990)
Extrachromosomal homologous recombination and gene targeting in plant cells after Agrobacterium mediated transformation.The EMBO Journal, 9
-
L. Davis, N. Maizels (2011)
DNA Nicks Promote Efficient and Safe Targeted Gene CorrectionPLoS ONE, 6
-
Andrew Ward, P. Etessami, J. Stanley (1988)
Expression of a bacterial gene in plants mediated by infectious geminivirus DNAThe EMBO Journal, 7
-
C. McCallum, L. Comai, E. Greene, S. Henikoff (2000)
Targeted screening for induced mutationsNature Biotechnology, 18
-
A. Mak, P. Bradley, R. Cernadas, A. Bogdanove, B. Stoddard (2012)
The Crystal Structure of TAL Effector PthXo1 Bound to Its DNA TargetScience, 335
-
Liron Even-Faitelson, Aviva Samach, C. Melamed-Bessudo, Naomi Avivi‐Ragolsky, A. Levy (2011)
Localized egg-cell expression of effector proteins for targeted modification of the Arabidopsis genome.The Plant journal : for cell and molecular biology, 68 5
-
Minmin Qin, C. Bayley, Tamalyn Stockton, D. Ow (1994)
Cre recombinase-mediated site-specific recombination between plant chromosomes.Proceedings of the National Academy of Sciences of the United States of America, 91
-
T. Čermák, Erin Doyle, Michelle Christian, Li Wang, Yong Zhang, Clarice Schmidt, J. Baller, N. Somia, A. Bogdanove, D. Voytas (2011)
Erratum: Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting (Nucleic Acids Research (2011) 39 (e82) DOI: 10.1093/nar/gkr218)Nucleic Acids Research, 39
-
F. Felippes, Jia-Wei Wang, D. Weigel (2012)
MIGS: miRNA-induced gene silencing.The Plant journal : for cell and molecular biology, 70 3
-
Salvatore Orlando, Yolanda Santiago, Russell Dekelver, Yevgeniy Freyvert, E. Boydston, E. Moehle, Vivian Choi, Sunita Gopalan, J. Lou, James Li, Jeffrey Miller, M. Holmes, P. Gregory, F. Urnov, G. Cost (2010)
Zinc-finger nuclease-driven targeted integration into mammalian genomes using donors with limited chromosomal homologyNucleic Acids Research, 38
-
Y. Doyon, Thuy Vo, M. Mendel, Shon Greenberg, Jianbin Wang, Danny Xia, Jeffrey Miller, F. Urnov, P. Gregory, M. Holmes (2011)
Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architecturesNature Methods, 8
-
J. Valton, F. Daboussi, Sophie Leduc, R. Molina, P. Redondo, R. Macmaster, G. Montoya, P. Duchateau (2012)
5′-Cytosine-Phosphoguanine (CpG) Methylation Impacts the Activity of Natural and Engineered MeganucleasesThe Journal of Biological Chemistry, 287
-
A. Bogdanove, D. Voytas (2011)
TAL Effectors: Customizable Proteins for DNA TargetingScience, 333
-
A. Mercer, T. Gaj, Roberta Fuller, C. Barbas (2012)
Chimeric TALE recombinases with programmable DNA sequence specificityNucleic Acids Research, 40
-
S. Pater, L. Neuteboom, J. Pinas, P. Hooykaas, B. Zaal (2009)
ZFN-induced mutagenesis and gene-targeting in Arabidopsis through Agrobacterium-mediated floral dip transformation.Plant biotechnology journal, 7 8
-
Jeffry Sander, Elizabeth Dahlborg, Mathew Goodwin, Lindsay Cade, Feng Zhang, D. Cifuentes, Shaun Curtin, Jessica Blackburn, Stacey Thibodeau-Beganny, Yiping Qi, Christopher Pierick, E. Hoffman, Morgan Maeder, Cyd Khayter, D. Reyon, D. Dobbs, D. Langenau, R. Stupar, Antonio Giráldez, D. Voytas, R. Peterson, R. Peterson, J. Yeh, J. Joung (2010)
Selection-Free Zinc-Finger Nuclease Engineering by Context-Dependent Assembly (CoDA)Nature methods, 8
-
Lixin Li, M. Piatek, Ahmed Atef, A. Piatek, A. Wibowo, Xiaoyun Fang, Jamal Sabir, Jian‐Kang Zhu, Magdy Mahfouz (2012)
Rapid and highly efficient construction of TALE-based transcriptional regulators and nucleases for genome modificationPlant Molecular Biology, 78
-
A. Ziemienowicz, Y. Shim, A. Matsuoka, F. Eudes, I. Kovalchuk (2012)
A Novel Method of Transgene Delivery into Triticale Plants Using the Agrobacterium Transferred DNA-Derived Nano-Complex[W][OA]Plant Physiology, 158
-
M. Pacher, W. Schmidt-Puchta, H. Puchta (2007)
Two Unlinked Double-Strand Breaks Can Induce Reciprocal Exchanges in Plant Genomes via Homologous Recombination and Nonhomologous End JoiningGenetics, 175
-
Shaun Curtin, D. Voytas, R. Stupar (2012)
Genome Engineering of Crops with Designer NucleasesThe Plant Genome, 5
-
Jianbin Wang, G. Friedman, Y. Doyon, Nathaniel Wang, Carrie Li, Jeffrey Miller, Kevin Hua, J. Yan, Joshua Babiarz, P. Gregory, M. Holmes (2012)
Targeted gene addition to a predetermined site in the human genome using a ZFN-based nicking enzymeGenome Research, 22
-
Jeffrey Miller, M. Holmes, Jianbin Wang, Dmitry Guschin, Ya-Li Lee, I. Rupniewski, C. Beauséjour, A. Waite, Nathaniel Wang, Kenneth Kim, P. Gregory, C. Pabo, E. Rebar (2007)
An improved zinc-finger nuclease architecture for highly specific genome editingNature Biotechnology, 25
-
W. Waterworth, G. Drury, C. Bray, C. West (2011)
Repairing breaks in the plant genome: the importance of keeping it together.The New phytologist, 192 4
-
A. Jacquier, B. Dujon (1985)
An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial geneCell, 41
-
R. Terada, H. Urawa, Y. Inagaki, Kazuo Tsugane, S. Iida (2002)
Efficient gene targeting by homologous recombination in riceNature Biotechnology, 20
-
G. Jander, Carina Barth (2007)
Tandem gene arrays: a challenge for functional genomics.Trends in plant science, 12 5
-
Russell Gordley, Justin Smith, T. Gräslund, C. Barbas (2007)
Evolution of programmable zinc finger-recombinases with activity in human cells.Journal of molecular biology, 367 3
-
Ana Bozas, Kelly Beumer, J. Trautman, D. Carroll (2009)
Genetic Analysis of Zinc-Finger Nuclease-Induced Gene Targeting in DrosophilaGenetics, 182
-
K. Bae, Y. Kwon, Hyun-Chul Shin, M. Hwang, Eun-Hyun Ryu, K. Park, Hyo-Young Yang, Dong-ki Lee, Yangsoon Lee, Jinwoo Park, H. Kwon, Hyun-won Kim, B. Yeh, Hyean‐Woo Lee, Soon Sohn, Joonho Yoon, W. Seol, Jin-Soo Kim (2003)
Human zinc fingers as building blocks in the construction of artificial transcription factorsNature Biotechnology, 21
-
Mauricio Antunes, Jeff Smith, D. Jantz, J. Medford (2012)
Targeted DNA excision in Arabidopsis by a re-engineered homing endonucleaseBMC Biotechnology, 12
-
T. Čermák, Erin Doyle, Michelle Christian, Li Wang, Yong Zhang, Clarice Schmidt, J. Baller, N. Somia, A. Bogdanove, D. Voytas (2011)
Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targetingNucleic Acids Research, 39
-
V. Gorbunova, A. Levy (1997)
Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions.Nucleic acids research, 25 22
-
G. Shalev, Y. Sitrit, N. Avivi-Ragolski, C. Lichtenstein, A. Levy (1999)
Stimulation of homologous recombination in plants by expression of the bacterial resolvase ruvC.Proceedings of the National Academy of Sciences of the United States of America, 96 13
-
Adrian Briggs, Xavier Rios, R. Chari, Luhan Yang, Feng Zhang, P. Mali, G. Church (2012)
Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomersNucleic Acids Research, 40
-
A. Lombardo, P. Genovese, C. Beauséjour, S. Colleoni, Ya-Li Lee, Kenneth Kim, D. Ando, F. Urnov, C. Galli, P. Gregory, M. Holmes, L. Naldini (2007)
Gene editing in human stem cells using zinc finger nucleases and integrase-defective lentiviral vector deliveryNature Biotechnology, 25
-
Michelle Christian, T. Čermák, Erin Doyle, Clarice Schmidt, Feng Zhang, Aaron Hummel, A. Bogdanove, D. Voytas (2010)
Targeting DNA Double-Strand Breaks with TAL Effector NucleasesGenetics, 186
-
S. Irion, H. Luche, Paul Gadue, H. Fehling, M. Kennedy, G. Keller (2007)
Identification and targeting of the ROSA26 locus in human embryonic stem cellsNature Biotechnology, 25
-
Marcello Maresca, V. Lin, Ning Guo, Yi Yang (2013)
Obligate Ligation-Gated Recombination (ObLiGaRe): Custom-designed nuclease-mediated targeted integration through nonhomologous end joiningGenome Research, 23
-
S. Henikoff, B. Till, L. Comai (2004)
TILLING. Traditional Mutagenesis Meets Functional GenomicsPlant Physiology, 135
-
Michael Certo, Kamila Gwiazda, Ryan Kuhar, Blythe Sather, G. Curinga, T. Mandt, Michelle Brault, A. Lambert, Sarah Baxter, Kyle Jacoby, B. Ryu, H. Kiem, A. Gouble, F. Pâques, D. Rawlings, A. Scharenberg (2012)
Coupling endonucleases with DNA end–processing enzymes to drive gene disruptionNature Methods, 9
-
Feng Zhang, Le Cong, S. Lodato, Sriram Kosuri, G. Church, P. Arlotta (2011)
Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription.Nature biotechnology, 29 2
-
R. Siebert, H. Puchta (2002)
Efficient Repair of Genomic Double-Strand Breaks by Homologous Recombination between Directly Repeated Sequences in the Plant Genome Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.001727.The Plant Cell Online, 14
-
C. Mussolino, Robert Morbitzer, Fabienne Lütge, N. Dannemann, T. Lahaye, T. Cathomen (2011)
A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicityNucleic Acids Research, 39
-
R. Schwab, S. Ossowski, Markus Riester, N. Warthmann, D. Weigel (2006)
Highly Specific Gene Silencing by Artificial MicroRNAs in Arabidopsis[W][OA]The Plant Cell Online, 18
-
C. Ramirez, Michael Certo, C. Mussolino, Mathew Goodwin, T. Cradick, A. McCaffrey, T. Cathomen, A. Scharenberg, J. Joung (2012)
Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effectsNucleic Acids Research, 40
-
J. Petolino, Andrew Worden, K. Curlee, J. Connell, Tonya Moynahan, Cory Larsen, Sean Russell (2010)
Zinc finger nuclease-mediated transgene deletionPlant Molecular Biology, 73
-
S. Grizot, J. Smith, F. Daboussi, J. Prieto, P. Redondo, N. Merino, Maider Villate, Séverine Thomas, Laetitia Lemaire, G. Montoya, F. Blanco, F. Pâques, P. Duchateau (2009)
Efficient targeting of a SCID gene by an engineered single-chain homing endonucleaseNucleic Acids Research, 37
-
K. Osakabe, Yuriko Osakabe, S. Toki (2010)
Site-directed mutagenesis in Arabidopsis using custom-designed zinc finger nucleasesProceedings of the National Academy of Sciences, 107
-
Z. Miao, Eric Lam (1995)
Targeted disruption of the TGA3 locus in Arabidopsis thaliana.The Plant journal : for cell and molecular biology, 7 2
-
K. Lee, P. Lund, K. Lowe, P. Dunsmuir (1990)
Homologous recombination in plant cells after Agrobacterium-mediated transformation.The Plant cell, 2
-
Bernd Reiss, Ingo Schubert, Kerstin Köpchen, Edelgard Wendeler, Jeff Schell, Holger Puchta (2000)
RecA stimulates sister chromatid exchange and the fidelity of double-strand break repair, but not gene targeting, in plants transformed by Agrobacterium.Proceedings of the National Academy of Sciences of the United States of America, 97 7
-
P. Rouet, F. Smih, M. Jasin (1994)
Expression of a site-specific endonuclease stimulates homologous recombination in mammalian cells.Proceedings of the National Academy of Sciences of the United States of America, 91 13
-
H. Puchta, B. Dujon, B. Hohn (1993)
Homologous recombination in plant cells is enhanced by in vivo induction of double strand breaks into DNA by a site-specific endonuclease.Nucleic acids research, 21 22
-
H. Lee, Eunji Kim, Jin-Soo Kim (2010)
Targeted chromosomal deletions in human cells using zinc finger nucleases.Genome research, 20 1
-
Michelle Christian, Z. Demorest, Colby Starker, Mark Osborn, Mick Nyquist, Yong Zhang, D. Carlson, P. Bradley, A. Bogdanove, D. Voytas (2012)
Targeting G with TAL Effectors: A Comparison of Activities of TALENs Constructed with NN and NK Repeat Variable Di-ResiduesPLoS ONE, 7
-
J. Smith, S. Grizot, S. Arnould, A. Duclert, J. Epinat, P. Chames, J. Prieto, P. Redondo, F. Blanco, J. Bravo, G. Montoya, F. Pâques, P. Duchateau (2006)
A combinatorial approach to create artificial homing endonucleases cleaving chosen sequencesNucleic Acids Research, 34
-
M. Moscou, A. Bogdanove (2009)
A Simple Cipher Governs DNA Recognition by TAL EffectorsScience, 326
-
Kelly Beumer, J. Trautman, Ana Bozas, Ji-Long Liu, J. Rutter, J. Gall, D. Carroll (2008)
Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleasesProceedings of the National Academy of Sciences, 105
-
J. Valton, A. Dupuy, F. Daboussi, Séverine Thomas, Alan Maréchal, R. Macmaster, Kevin Melliand, A. Juillerat, P. Duchateau (2012)
Overcoming Transcription Activator-like Effector (TALE) DNA Binding Domain Sensitivity to Cytosine Methylation*♦The Journal of Biological Chemistry, 287
-
Friedrich Fauser, Nadine Roth, M. Pacher, Gabriele Ilg, R. Sánchez-Fernández, C. Biesgen, H. Puchta (2012)
In planta gene targetingProceedings of the National Academy of Sciences, 109
-
Y. Kim, Jooyeun Cha, S. Chandrasegaran (1996)
Hybrid restriction enzymes: zinc finger fusions to Fok I cleavage domain.Proceedings of the National Academy of Sciences of the United States of America, 93 3
-
J. Cabaniols, C. Ouvry, Véronique Lamamy, I. Féry, Marie-Laure Craplet, N. Moulharat, S. Guénin, S. Bedut, O. Nosjean, G. Ferry, S. Devavry, Cécile Jacqmarcq, C. Lebuhotel, L. Mathis, C. Delenda, J. Boutin, P. Duchateau, F. Cogé, F. Pâques (2010)
Meganuclease-Driven Targeted Integration in CHO-K1 Cells for the Fast Generation of HTS-Compatible Cell-Based AssaysJournal of Biomolecular Screening, 15
-
B. Elliott, C. Richardson, Jamie Winderbaum, J. Nickoloff, M. Jasin (1998)
Gene Conversion Tracts from Double-Strand Break Repair in Mammalian CellsMolecular and Cellular Biology, 18
-
Morgan Maeder, Stacey Thibodeau-Beganny, A. Osiak, David Wright, Reshma Anthony, Magdalena Eichtinger, Tao Jiang, Jonathan Foley, Ronnie Winfrey, Jeffrey Townsend, Erica Unger-Wallace, Jeffry Sander, Felix Müller-Lerch, Fengli Fu, J. Pearlberg, Carl Göbel, Justin Dassie, S. Pruett-Miller, Matthew Porteus, Dennis Sgroi, A. Iafrate, D. Dobbs, Paul Mccray, T. Cathomen, Daniel Voytas, J. Joung, J. Joung (2008)
Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification.Molecular cell, 31 2
-
J. Boch, U. Bonas (2010)
Xanthomonas AvrBs3 family-type III effectors: discovery and function.Annual review of phytopathology, 48
-
D. Wright, J. Townsend, Ronnie Winfrey, Phillip Irwin, J. Rajagopal, P. Lonosky, B. Hall, Michael Jondle, D. Voytas (2005)
High-frequency homologous recombination in plants mediated by zinc-finger nucleases.The Plant journal : for cell and molecular biology, 44 4
-
Markus Baur, Ingo Potrykus, Jerzy PASZKOWSKIt (1990)
Intermolecular homologous recombination in plantsMolecular and Cellular Biology, 10
-
I. Marton, A. Zuker, Elena Shklarman, Vardit Zeevi, A. Tovkach, Suzy Roffe, M. Ovadis, T. Tzfira, A. Vainstein (2010)
Nontransgenic Genome Modification in Plant Cells1[W][OA]Plant Physiology, 154
-
Feng Zhang, Morgan Maeder, Erica Unger-Wallace, Justin Hoshaw, D. Reyon, Michelle Christian, Xiaohong Li, Christopher Pierick, D. Dobbs, T. Peterson, J. Joung, D. Voytas (2010)
High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleasesProceedings of the National Academy of Sciences, 107
-
Yiping Qi, Yong Zhang, Feng Zhang, J. Baller, Spencer Cleland, Yungil Ryu, Colby Starker, D. Voytas (2013)
Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathwaysGenome Research, 23
-
U. Halfter, P. Morris, L. Willmitzer (2004)
Gene targeting in Arabidopsis thalianaMolecular and General Genetics MGG, 231
-
V. Shukla, Y. Doyon, Jeffrey Miller, Russell Dekelver, E. Moehle, S. Worden, Jon Mitchell, Nicole Arnold, Sunita Gopalan, Xiangdong Meng, Vivian Choi, Jeremy Rock, Ying-Ying Wu, George Katibah, Zhifang Gao, D. Mccaskill, Matthew Simpson, B. Blakeslee, Scott Greenwalt, Holly Butler, Sarah Hinkley, Lei Zhang, E. Rebar, P. Gregory, F. Urnov (2009)
Precise genome modification in the crop species Zea mays using zinc-finger nucleasesNature, 459
-
Huirong Gao, Jeff Smith, Meizhu Yang, Spencer Jones, Vesna Djukanovic, Michael Nicholson, A. West, D. Bidney, S. Falco, D. Jantz, L. Lyznik (2010)
Heritable targeted mutagenesis in maize using a designed endonuclease.The Plant journal : for cell and molecular biology, 61 1
-
J. Alonso, A. Stepanova, Thomas Leisse, Christopher Kim, Huaming Chen, P. Shinn, Denise Stevenson, J. Zimmerman, Pascual Barajas, Rosa Cheuk, Carmelita Gadrinab, Collen Heller, Albert Jeske, Eric Koesema, Cristina Meyers, Holly Parker, Lance Prednis, Yasser Ansari, Nathan Choy, Hashim Deen, M. Geralt, N. Hazari, Emily Hom, Meagan Karnes, C. Mulholland, Ral Ndubaku, Ian Schmidt, P. Guzmán, Laura Aguilar-Henonin, M. Schmid, D. Weigel, D. Carter, T. Marchand, E. Risseeuw, Debra Brogden, Albana Zeko, W. Crosby, C. Berry, J. Ecker (2003)
Genome-Wide Insertional Mutagenesis of Arabidopsis thalianaScience, 301
-
D. Carroll (2011)
Genome Engineering With Zinc-Finger NucleasesGenetics, 188
-
Shaun Curtin, Feng Zhang, Jeffry Sander, W. Haun, Colby Starker, N. Baltes, D. Reyon, Elizabeth Dahlborg, Mathew Goodwin, Andrew Coffman, D. Dobbs, J. Joung, D. Voytas, R. Stupar (2011)
Targeted Mutagenesis of Duplicated Genes in Soybean with Zinc-Finger Nucleases1[W][OA]Plant Physiology, 156
-
Tingyu Li, Sheng Huang, W. Jiang, D. Wright, M. Spalding, D. Weeks, Bing Yang (2010)
TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domainNucleic Acids Research, 39
-
P. Römer, S. Hahn, Tina Jordan, Tina Strauß, U. Bonas, T. Lahaye (2007)
Plant Pathogen Recognition Mediated by Promoter Activation of the Pepper Bs3 Resistance GeneScience, 318
-
H. Lee, Jiyeon Kweon, Eunji Kim, Seokjoong Kim, Jin-Soo Kim (2012)
Targeted chromosomal duplications and inversions in the human genome using zinc finger nucleases.Genome research, 22 3
-
M. Mahfouz, Lixin Li, M. Shamimuzzaman, A. Wibowo, Xiaoyun Fang, Jian‐Kang Zhu (2011)
De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaksProceedings of the National Academy of Sciences, 108
-
A. Lloyd, Christopher Plaisier, D. Carroll, G. Drews (2005)
Targeted mutagenesis using zinc-finger nucleases in Arabidopsis.Proceedings of the National Academy of Sciences of the United States of America, 102 6
-
Jeffrey Townsend, David Wright, Ronnie Winfrey, Fengli Fu, Morgan Maeder, J. Joung, D. Voytas (2009)
High frequency modification of plant genes using engineered zinc finger nucleasesNature, 459
-
Holger Puchta (1999)
Double-strand break-induced recombination between ectopic homologous sequences in somatic plant cells.Genetics, 152 3
-
E. Moehle, Jeremy Rock, Ya-Li Lee, Y. Jouvenot, Russell Dekelver, P. Gregory, F. Urnov, M. Holmes (2007)
Targeted gene addition into a specified location in the human genome using designed zinc finger nucleasesProceedings of the National Academy of Sciences, 104
-
M. McVey, Sang Lee (2008)
MMEJ repair of double-strand breaks (director's cut): deleted sequences and alternative endings.Trends in genetics : TIG, 24 11
-
N. Sun, Jing Liang, Zhanar Abil, Huimin Zhao (2012)
Optimized TAL effector nucleases (TALENs) for use in treatment of sickle cell disease.Molecular bioSystems, 8 4
-
H. Gherbi, M. Gallego, Nicole Jalut, J. Lucht, B. Hohn, C. White (2001)
Homologous recombination in planta is stimulated in the absence of Rad50EMBO reports, 2
-
Tingyu Li, Bo Liu, M. Spalding, D. Weeks, Bing Yang (2012)
High-efficiency TALEN-based gene editing produces disease-resistant riceNature Biotechnology, 30
-
F. Pâques, P. Duchateau (2007)
Meganucleases and DNA double-strand break-induced recombination: perspectives for gene therapy.Current gene therapy, 7 1
-
Jeffrey Miller, Siyuan Tan, Guijuan Qiao, Kyle Barlow, Jianbin Wang, Danny Xia, Xiangdong Meng, David Paschon, Elo Leung, Sarah Hinkley, Gladys Dulay, Kevin Hua, Irina Ankoudinova, G. Cost, F. Urnov, Steve Zhang, M. Holmes, Lei Zhang, P. Gregory, E. Rebar (2011)
A TALE nuclease architecture for efficient genome editingNature Biotechnology, 29
-
Jana Streubel, C. Blücher, Angelika Landgraf, J. Boch (2012)
TAL effector RVD specificities and efficienciesNature Biotechnology, 30
-
Yong Zhang, Feng Zhang, Xiaohong Li, J. Baller, Yiping Qi, Colby Starker, A. Bogdanove, D. Voytas (2012)
Transcription Activator-Like Effector Nucleases Enable Efficient Plant Genome Engineering1[W][OA]Plant Physiology, 161
-
D. Deng, Chuangye Yan, Xiaojing Pan, M. Mahfouz, Jiawei Wang, Jian‐Kang Zhu, Yigong Shi, N. Yan (2012)
Structural Basis for Sequence-Specific Recognition of DNA by TAL EffectorsScience, 335
-
Siegfried Salomon, H. Puchta (1998)
Capture of genomic and T‐DNA sequences during double‐strand break repair in somatic plant cellsThe EMBO Journal, 17
-
Richard Gabriel, A. Lombardo, A. Arens, Jeffrey Miller, P. Genovese, Christine Kaeppel, A. Nowrouzi, C. Bartholomae, Jianbin Wang, G. Friedman, M. Holmes, P. Gregory, H. Glimm, M. Schmidt, L. Naldini, C. Kalle (2011)
An unbiased genome-wide analysis of zinc-finger nuclease specificityNature Biotechnology, 29
-
G. Shalev, A. Levy (1997)
The maize transposable element Ac induces recombination between the donor site and an homologous ectopic sequence.Genetics, 146 3
-
Le Cong, R. Zhou, Yu-chi Kuo, Margaret Cunniff, Feng Zhang (2012)
Comprehensive Interrogation of Natural TALE DNA Binding Modules and Transcriptional Repressor DomainsNature communications, 3
-
N. Orel, Anzhela Kyryk, H. Puchta (2003)
Different pathways of homologous recombination are used for the repair of double-strand breaks within tandemly arranged sequences in the plant genome.The Plant journal : for cell and molecular biology, 35 5
-
Ayako Nishizawa-Yokoi, Satoko Nonaka, H. Saika, Yong-Ik Kwon, K. Osakabe, S. Toki (2012)
Suppression of Ku70/80 or Lig4 leads to decreased stable transformation and enhanced homologous recombination in riceThe New Phytologist, 196
-
S. Kay, S. Hahn, E. Marois, G. Hause, U. Bonas (2007)
A Bacterial Effector Acts as a Plant Transcription Factor and Induces a Cell Size RegulatorScience, 318
-
C. Richardson, M. Jasin (2000)
Coupled Homologous and Nonhomologous Repair of a Double-Strand Break Preserves Genomic Integrity in Mammalian CellsMolecular and Cellular Biology, 20
-
F. Daboussi, M. Zaslavskiy, L. Poirot, M. Loperfido, A. Gouble, Valérie Guyot, Sophie Leduc, R. Galetto, S. Grizot, Danusia Oficjalska, Christophe Perez, F. Delacôte, A. Dupuy, I. Chion-Sotinel, Diane Clerre, C. Lebuhotel, O. Danos, Frédéric Lemaire, K. Oussedik, F. Cédrone, J. Epinat, J. Smith, Rafael Yáñez-Muñoz, G. Dickson, L. Popplewell, T. Koo, T. VandenDriessche, M. Chuah, A. Duclert, P. Duchateau, F. Pâques (2012)
Chromosomal context and epigenetic mechanisms control the efficacy of genome editing by rare-cutting designer endonucleasesNucleic Acids Research, 40
-
Eunji Kim, Sojung Kim, Duk-Hyoung Kim, Beom-Soon Choi, Ik-Young Choi, Jin-Soo Kim (2012)
Precision genome engineering with programmable DNA-nicking enzymesGenome Research, 22
-
Y. Doyon, J. McCammon, Jeffrey Miller, F. Faraji, C. Ngo, George Katibah, Rainier Amora, T. Hocking, Lei Zhang, E. Rebar, P. Gregory, F. Urnov, S. Amacher (2008)
Heritable Targeted Gene Disruption in Zebrafish Using Designed Zinc Finger NucleasesNature biotechnology, 26
-
Fuqiang Chen, S. Pruett-Miller, Yuping Huang, Monika Gjoka, K. Duda, J. Taunton, T. Collingwood, M. Frodin, G. Davis (2011)
High-frequency genome editing using ssDNA oligonucleotides with zinc-finger nucleasesNature Methods, 8
-
C. Day, Elsa Lee, Janell Kobayashi, L. Holappa, H. Albert, D. Ow (2000)
Transgene integration into the same chromosome location can produce alleles that express at a predictable level, or alleles that are differentially silenced.Genes & development, 14 22
- Publisher
- Annual Reviews
- Copyright
- Copyright © 2013 by Annual Reviews. All rights reserved
- ISSN
- 1040-2519
- DOI
- 10.1146/annurev-arplant-042811-105552
- pmid
- 23451779
- Publisher site
- See Article on Publisher Site
Abstract
Recent advances in genome engineering provide newfound control over a plant's genetic material. It is now possible for most bench scientists to alter DNA in living plant cells in a variety of ways, including introducing specific nucleotide substitutions in a gene that change a protein's amino acid sequence, deleting genes or chromosomal segments, and inserting foreign DNA at precise genomic locations. Such targeted DNA sequence modifications are enabled by sequence-specific nucleases that create double-strand breaks in the genomic loci to be altered. The repair of the breaks, through either homologous recombination or nonhomologous end joining, can be controlled to achieve the desired sequence modification. Genome engineering promises to advance basic plant research by linking DNA sequences to biological function. Further, genome engineering will enable plants' biosynthetic capacity to be harnessed to produce the many agricultural products required by an expanding world population.
Journal
Annual Review of Plant Biology – Annual Reviews
Published: Apr 29, 2013