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F. Allendorf, S. Phelps (1981)
Use of Allelic Frequencies to Describe Population StructureCanadian Journal of Fisheries and Aquatic Sciences, 38
L. Cavalli-Sforza, A. Edwards (1967)
PHYLOGENETIC ANALYSIS: MODELS AND ESTIMATION PROCEDURESEvolution, 21
O. Johnson, R. Waples, T. Wainwright, Kathleen Neely, F. Waknitz, L. Parker (1994)
Status review for Oregon's Umpqua River sea-run cutthroat trout
M. Hansen, E. Nielsen, K. Mensberg (1997)
The problem of sampling families rather than populations: relatedness among individuals in samples of juvenile brown trout Salmo trutta L.Molecular Ecology, 6
S. Forbes, F. Allendorf (1991)
ASSOCIATIONS BETWEEN MITOCHONDRIAL AND NUCLEAR GENOTYPES IN CUTTHROAT TROUT HYBRID SWARMSEvolution, 45
(1991)
Definition of 'species' under the Endangered Species Act: application to Pacific salmon. US Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service
J. Shaklee, N. Varnavskaya (1994)
Electrophoretic Characterization of Odd-Year Pink Salmon (Oncorhynchus gorbuscha) Populations from the Pacific Coast of Russia, and Comparison with Selected North American PopulationsCanadian Journal of Fisheries and Aquatic Sciences, 51
P. Trotter, P. Bisson, Brian Fransen (1993)
Status and Plight of the Searun Cutthroat Trout
(1993)
P H Y L I P version 3.5c. Department of Genetics
F. Utter, J. Seeb, L. Seeb (1993)
Complementary uses of ecological and biochemical genetic data in identifying and conserving salmon populationsFisheries Research, 18
C. Wood, C. Foote (1996)
EVIDENCE FOR SYMPATRIC GENETIC DIVERGENCE OF ANADROMOUS AND NONANADROMOUS MORPHS OF SOCKEYE SALMON (ONCORHYNCHUS NERKA)Evolution, 50
D. Hartl, A. Clark (1981)
Principles of population genetics
M. Bruford, R. Wayne (1993)
Microsatellites and their application to population genetic studies.Current opinion in genetics & development, 3 6
B. Angers, L. Bernatchez (1998)
Combined Use of SMM and Non-SMM Methods to Infer Fine Structure and Evolutionary History of Closely Related Brook Charr (Salvelinus fontinalis, Salmonidea) Populations from MicrosatellitesMolecular Biology and Evolution, 15
D. Ruzzante, C. Taggart, D. Cook, S. Goddard (1996)
Genetic differentiation between inshore and offshore Atlantic cod (Gadus morhua) off Newfoundland : microsatellite DNA variation and antifreeze levelCanadian Journal of Fisheries and Aquatic Sciences, 53
F. Utter (1981)
Biological Criteria for Definition of Species and Distinct Intraspecific Populations of Anadromous Salmonids Under the U.S. Endangered Species Act of 1973Canadian Journal of Fisheries and Aquatic Sciences, 38
D. Paetkau, C. Strobeck (1994)
Microsatellite analysis of genetic variation in black bear populationsMolecular Ecology, 3
W. Leggett (1977)
The Ecology of Fish MigrationsAnnual Review of Ecology, Evolution, and Systematics, 8
B. Weir, C. Cockerham (1984)
ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTUREEvolution, 38
P. O’Reilly, L. Hamilton, S. McConnell, J. Wright (1996)
Rapid analysis of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellitesCanadian Journal of Fisheries and Aquatic Sciences, 53
S. Yokoyama, R. Yokoyama, C. Kinlaw, D. Harry (1990)
Molecular evolution of the zinc-containing long-chain alcohol dehydrogenase genes.Molecular biology and evolution, 7 2
M. Nei (1978)
Estimation of average heterozygosity and genetic distance from a small number of individuals.Genetics, 89 3
J. Goudet (1995)
FSTAT (Version 1.2): A Computer Program to Calculate F-StatisticsJournal of Heredity, 86
(1972)
Heredity and environmental factors affecting certain salmonid populations
R. Leary, F. Allendorf, S. Phelps, K. Knudsen (1987)
Genetic Divergence and Identification of Seven Cutthroat Trout Subspecies and Rainbow TroutTransactions of The American Fisheries Society, 116
M. Slatkin (1985)
RARE ALLELES AS INDICATORS OF GENE FLOWEvolution, 39
N. Aspinwall (1974)
GENETIC ANALYSIS OF NORTH AMERICAN POPULATIONS OF THE PINK SALMON, ONCORHYNCHUS GORBUSCHA, POSSIBLE EVIDENCE FOR THE NEUTRAL MUTATION‐RANDOM DRIFT HYPOTHESISEvolution, 28
K. Scribner, J. Gust, R. Fields (1996)
Isolation and characterization of novel salmon microsatellite loci: cross-species amplification and population genetic applicationsCanadian Journal of Fisheries and Aquatic Sciences, 53
F. Allendorf, S. Phelps (1980)
Loss of Genetic Variation in a Hatchery Stock of Cutthroat TroutTransactions of The American Fisheries Society, 109
L. Mills, F. Allendorf (1996)
The One‐Migrant‐per‐Generation Rule in Conservation and ManagementConservation Biology, 10
D. Ruzzante, C. Taggart, D. Cook (1996)
Spatial and temporal variation in the genetic composition of a larval cod (Gadus morhua) aggregation: Cohort contribution and genetic stabilityCanadian Journal of Fisheries and Aquatic Sciences, 53
A. Hoelzel, A. Green (1992)
Analysis of population-level variation by sequencing PCR- amplified DNA
S. McConnell, D. Ruzzante, Patrick O'Reilly, L. Hamilton, Jonathan Wright (1997)
Microsatellite loci reveal highly significant genetic differentiation among Atlantic salmon (Salmo salar L.) stocks from the east coast of CanadaMolecular Ecology, 6
José Sánchez, C. Clabby, D. Ramos, G. Blanco, F. Flavin, E. Vázquez, Richard Powell (1996)
Protein and microsatellite single locus variability in Salmo salar L. (Atlantic salmon)Heredity, 77
N. Takezaki, M. Nei (1996)
Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA.Genetics, 144 1
T. Quinn, C. Groot, L. Margolis (1992)
Pacific Salmon Life Histories
M. Slatkin (1995)
A measure of population subdivision based on microsatellite allele frequencies.Genetics, 139 1
S. Forbes, J. Hogg, F. Buchanan, A. Crawford, F. Allendorf (1995)
Microsatellite evolution in congeneric mammals: domestic and bighorn sheep.Molecular biology and evolution, 12 6
M. Kimura, J. Crow (1964)
THE NUMBER OF ALLELES THAT CAN BE MAINTAINED IN A FINITE POPULATION.Genetics, 49
(1981)
Proceedings from the 1980 Stock Concept International Symposium
(1976)
The Study of Cutthroat-Steelhead in Alaska
R. Giger (1972)
Ecology and Management of Coastal Cutthroat Trout in Oregon
C. Moritz (1994)
Applications of mitochondrial DNA analysis in conservation: a critical reviewMolecular Ecology, 3
M. Raymond, F. Rousset (1995)
GENEPOP (version 1.2): population genetic software for exact tests and ecumenicism
(1976)
Sea-run Cutthroat in Saltwater Pens: Broodstock Development and Extended Juvenile Rearing (with a Life History Compendium)
B. Milligan, J. Leebens-Mack, A. Strand (1994)
Conservation genetics: beyond the maintenance of marker diversityMolecular Ecology, 3
A. Taylor, A. Taylor, W. Sherwin, R. Wayne (1994)
Genetic variation of microsatellite loci in a bottlenecked species: the northern hairy‐nosed wombat Lasiorhinus krefftiiMolecular Ecology, 3
D. Campton, F. Allendorf, R. Behnke, F. Utter, M. Chilcote, Steven Leider, J. Loch (1991)
Reproductive Success of Hatchery and Wild SteelheadTransactions of The American Fisheries Society, 120
(1998)
Genetic interpretation of microsatellite polymorphism in North American oddyear pink salmon
Olsen Jb, Wenburg Jk, P. Bentzen (1996)
Semiautomated multilocus genotyping of Pacific salmon (Oncorhnychus spp.) using microsatellites.Molecular marine biology and biotechnology, 5 4
David Goldstein, A. Linares, L. Cavalli-Sforza, M. Feldman (1995)
Genetic absolute dating based on microsatellites and the origin of modern humans.Proceedings of the National Academy of Sciences of the United States of America, 92 15
P. Bentzen, C. Taggart, D. Ruzzante, D. Cook (1996)
Microsatellite polymorphism and the population structure of Atlantic cod (Gadus morhua) in the northwest AtlanticCanadian Journal of Fisheries and Aquatic Sciences, 53
(1987)
Genetic variation within a subdivided population
P. Landless (1976)
Demand-feeding behaviour of rainbow troutAquaculture, 7
F. Sumner (1953)
Migrations of Salmonids in Sand Creek, OregonTransactions of The American Fisheries Society, 82
N. Tessier, L. Bernatchez, P. Presa, B. Angers (1995)
Gene diversity analysis of mitochondrial DNA, microsatellites and allozymes in landlocked Atlantic salmonJournal of Fish Biology, 47
Sun-Wei Guo, E. Thompson (1992)
Performing the exact test of Hardy-Weinberg proportion for multiple alleles.Biometrics, 48 2
Wenburg is a PhD student in the Marine Molecular Biotechnology Laboratory (MMBL) at University of Washington
(1996)
Endangered and threatened species; endangered status for Umpqua River cutthroat trout in Oregon
B. Angers, L. Bernatchez, A. Angers, L. DesGroseillers (1995)
Specific microsatellite loci for brook charr reveal strong population subdivision on a microgeographic scaleJournal of Fish Biology, 47
N. Tessier, L. Bernatchez, J. Wright (1997)
Population structure and impact of supportive breeding inferred from mitochondrial and microsatellite DNA analyses in land‐locked Atlantic salmon Salmo salar L.Molecular Ecology, 6
B. Angers, L. Bernatchez (1997)
Complex evolution of a salmonid microsatellite locus and its consequences in inferring allelic divergence from size information.Molecular biology and evolution, 14 3
A. Rienzo, Alan Peterson, J. Garza, A. Valdes, M. Slatkin, N. Freimer (1994)
Mutational processes of simple-sequence repeat loci in human populations.Proceedings of the National Academy of Sciences of the United States of America, 91
François Rousset (1996)
Equilibrium values of measures of population subdivision for stepwise mutation processes.Genetics, 142 4
E. Taylor (1991)
A review of local adaptation in Salmonidac, with particular reference to Pacific and Atlantic salmonAquaculture, 98
D. Goldstein, D. Pollock (1997)
Launching microsatelites: a review of mutation processes and methods of phylogenetic inferenceHeredity, 88
P. Trotter (1989)
Coastal Cutthroat Trout: A Life History CompendiumTransactions of The American Fisheries Society, 118
J. Hey (1989)
Principles of population genetics (2nd edn)Trends in Genetics, 5
(1995)
A role for molecular systematics in defining evolutionarily significant units in fishes
E. Blackford
“Peculiar Features of the Fish‐Market”Transactions of The American Fisheries Society, 7
J. Nielsen, C. Gan, J. Wright, Dianne Morris, W. Thomas (1994)
Biogeographic distributions of mitochondrial and nuclear markers for southern steelhead
Y. Altukhov, E. Salmenkova (1991)
The genetic structure of salmon populationsAquaculture, 98
S. McConnell, L. Hamilton, Dianne Morris, D. Cook, D. Paquet, P. Bentzen, J. Wright (1995)
Isolation of salmonid microsatellite loci and their application to the population genetics of Canadian east coast stocks of Atlantic salmonAquaculture, 137
F. Sumner (1962)
Migration and Growth of the Coastal Cutthroat Trout in Tillamook County, OregonTransactions of The American Fisheries Society, 91
(1981)
Life history of anadromous cutthroat trout with emphasis on migratory behavior
Atmospheric Administration) (1994a) Federal Register Document
W. Nehlsen, Jack Williams, J. Lichatowich (1991)
Pacific Salmon at the Crossroads: Stocks at Risk from California, Oregon, Idaho, and WashingtonFisheries, 16
F. Utter, G. Milner, D. Teel, G. Ståhl (1989)
Genetic population structure of chinook salmon, oncorhynchus tshawytscha, in the Pacific Northwest
C. Dawes, J. LaClaire, R. Moon (1976)
Culture studies on Eucheuma nudum J. Agardh, a carrageenan producing red alga from FloridaAquaculture, 7
F. Allendorf, R. Leary (1988)
Conservation and Distribution of Genetic Variation in a Polytypic Species, the Cutthroat TroutConservation Biology, 2
R. Thorson (1980)
Ice-Sheet Glaciation of the Puget Lowland, Washington, during the Vashon Stade (Late Pleistocene)Quaternary Research, 13
W. Rice (1989)
ANALYZING TABLES OF STATISTICAL TESTSEvolution, 43
M. Nei (1987)
Molecular Evolutionary Genetics
D. Campton, F. Utter (1987)
Genetic Structure of Anadromous Cutthroat Trout (Salmo clarki clarki) Populations in the Puget Sound Area: Evidence for Restricted Gene FlowCanadian Journal of Fisheries and Aquatic Sciences, 44
G. Haskell (1953)
Quantitative variation in subsexual rubusHeredity, 7
T. Quinn (1993)
A review of homing and straying of wild and hatchery-produced salmonFisheries Research, 18
(1997)
Evolution, systematics, and structure of Oncorhynchus clarki clarki. In: Sea-run Cutthroat Trout: Biology, Management, and Future Conservation (eds Hall JD
D. Campton, F. Utter (1985)
Natural hybridization between steelhead trout (Salmo gairdneri) and coastal cutthroat trout (Salmo clarki clarki) in two Puget Sound streamsCanadian Journal of Fisheries and Aquatic Sciences, 42
B. Scheer (1939)
Homing Instinct in SalmonThe Quarterly Review of Biology, 14
Dianne Morris, K. Richard, J. Wright (1996)
Microsatellites from rainbow trout (Oncorhynchus mykiss) and their use for genetic study of salmonidsCanadian Journal of Fisheries and Aquatic Sciences, 53
J. Wenburg, J. Olsen, P. Bentzen (1996)
Multiplexed systems of microsatellites for genetic analysis in coastal cutthroat trout(Oncorhynchus clarki clarki) and steelhead (Oncorhynchus mykiss)
N. Ryman (1983)
Patterns of distribution of biochemical genetic variation in salmonids: differences between species.Aquaculture, 33
T. Watanabe (1998)
Isolation of a cDNA encoding a homologue of ribosomal protein L26 in the decapod crustacean Penaeus japonicus.Molecular marine biology and biotechnology, 7 4
S. McConnell, P. O’Reilly, L. Hamilton, J. Wright, P. Bentzen (1995)
Polymorphic microsatellite loci from Atlantic salmon (Salmo salar): genetic differentiation of North American and European populationsCanadian Journal of Fisheries and Aquatic Sciences, 52
Nicholas Barton, M. Slatkin (1986)
A Quasi-equilibrium theory of the distribution of rare alleles in a subdivided populationHeredity, 56
S. Wright (1950)
Genetical Structure of PopulationsBritish Medical Journal, 2
The genetic population structure of coastal cutthroat trout (Oncorhynchus clarki clarki) in Washington state was investigated by analysis of variation in allele frequencies at six highly polymorphic microsatellite loci for 13 anadromous populations, along with one outgroup population from the Yellowstone subspecies (O. clarki bouvieri) (mean heterozygosity = 67%; average number of alleles per locus = 24). Tests for genetic differentiation revealed highly significant differences in genotypic frequencies for pairwise comparisons between all populations within geographical regions and overall population subdivision was substantial (FST = 0.121, RST = 0.093), with 44.6% and 55.4% of the among‐population diversity being attributable to differences between streams (FSR = 0.054) and between regions (FRT = 0.067), respectively. Analysis of genetic distances and geographical distances did not support a simple model of isolation by distance for these populations. With one exception, neighbour‐joining dendrograms from the Cavalli‐Sforza and Edwards’ chord distances and maximum likelihood algorithms clustered populations by physiogeographic region, although overall bootstrap support was relatively low (53%). Our results suggest that coastal cutthroat trout populations are ultimately structured genetically at the level of individual streams. It appears that the dynamic balance between gene flow and genetic drift in the subspecies favours a high degree of genetic differentiation and population subdivision with the simultaneous maintenance of high heterozygosity levels within local populations. Results are discussed in terms of coastal cutthroat trout ecology along with implications for the designation of evolutionarily significant units pursuant to the US Endangered Species Act of 1973 and analogous conservation units.
Molecular Ecology – Wiley
Published: Jun 1, 1998
Keywords: ; ; ; ; ;
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