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- Publisher
- Springer Journals
- Copyright
- Copyright © 2015 by Springer-Verlag Wien
- Subject
- Biomedicine; Virology; Medical Microbiology; Infectious Diseases
- ISSN
- 0304-8608
- eISSN
- 1432-8798
- DOI
- 10.1007/s00705-014-2234-9
- pmid
- 25248627
- Publisher site
- See Article on Publisher Site
Abstract
Metagenomic analysis of fecal samples collected from diarrheal swine detected sequences encoding a replication initiator protein (Rep). The genomes of ten novel single-stranded DNA viruses were determined, and they exhibited a similar genome organization. The two putative open reading frames (ORFs) encoding Rep and the capsid protein are bidirectionally transcribed and separated by two intergenic regions. Stem-loop structure(s) typical of genomes that undergo the rolling-circle DNA replication mechanism were observed. Phylogenetically, these ten genomes are in a monophyletic clade with the previously described porcine stool-associated virus (PoSCV) but are divergent enough to be further classified into to six distinct virus clades.
Journal
Archives of Virology – Springer Journals
Published: Jan 1, 2015