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References (109)
-
H. Falk (1989)
The Chemistry of Linear Oligopyrroles and Bile Pigments -
S. Martinez, Sandra Bruder, Anita Schultz, N. Zheng, J. Schultz, J. Beavo, J. Linder (2005)
Crystal structure of the tandem GAF domains from a cyanobacterial adenylyl cyclase: modes of ligand binding and dimerization.Proceedings of the National Academy of Sciences of the United States of America, 102 8
-
M. Nakasako, T. Iwata, Katsuaki Inoue, S. Tokutomi (2005)
Light‐induced global structural changes in phytochrome A regulating photomorphogenesis in plantsThe FEBS Journal, 272
-
H. Foerstendorf, T. Lamparter, J. Hughes, W. Gärtner, F. Siebert (2000)
The Photoreactions of Recombinant Phytochrome from the Cyanobacterium Synechocystis: A Low-Temperature UV–Vis and FT-IR Spectroscopic Study, 71
-
Tomonao Matsushita, N. Mochizuki, A. Nagatani (2003)
Dimers of the N-terminal domain of phytochrome B are functional in the nucleusNature, 424
-
W. Humphrey, A. Dalke, K. Schulten (1996)
VMD: visual molecular dynamics.Journal of molecular graphics, 14 1
-
B. Quest, W. Gärtner (2004)
Chromophore selectivity in bacterial phytochromes: dissecting the process of chromophore attachment.European journal of biochemistry, 271 6
-
A. Fischer, N. Rockwell, A. Jang, L. Ernst, S. Alan, Waggoner, Y. Duan, Hongxing Lei, J. Lagarias (2005)
Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes.Biochemistry, 44 46
-
Wolfhart Rüdiger, F. Thümmler, E. Cmiel, Siegfried Schneider (1983)
Chromophore structure of the physiologically active form (P(fr)) of phytochrome.Proceedings of the National Academy of Sciences of the United States of America, 80 20
-
A. Göller, D. Strehlow, G. Hermann (2001)
Conformational flexibility of phycocyanobilin: an AM1 semiempirical study.Chemphyschem : a European journal of chemical physics and physical chemistry, 2 11
-
Shu-Hsing Wu, J. Lagarias (2000)
Defining the bilin lyase domain: lessons from the extended phytochrome superfamily.Biochemistry, 39 44
-
A. Jones, H. Erickson (1989)
DOMAIN STRUCTURE OF PHYTOCHROME FROM Avena sativa VISUALIZED BY ELECTRON MICROSCOPY *, †Photochemistry and Photobiology, 49
-
H. Otto, T. Lamparter, B. Borucki, J. Hughes, M. Heyn (2003)
Dimerization and inter-chromophore distance of Cph1 phytochrome from Synechocystis, as monitored by fluorescence homo and hetero energy transfer.Biochemistry, 42 19
-
E. Giraud, S. Zappa, L. Vuillet, J. Adriano, L. Hannibal, Joël Fardoux, C. Berthomieu, P. Bouyer, D. Pignol, A. Verméglio (2005)
A New Type of Bacteriophytochrome Acts in Tandem with a Classical Bacteriophytochrome to Control the Antennae Synthesis in Rhodopseudomonas palustris*Journal of Biological Chemistry, 280
-
(1995)
An Efficient Library for Parallel Ray Tracing and Animation -
Meng Chen, J. Chory, C. Fankhauser (2004)
Light signal transduction in higher plants.Annual review of genetics, 38
-
S. Mathews, R. Sharrock (1997)
Phytochrome gene diversityPlant Cell and Environment, 20
-
F. Andel, J. Murphy, J. Haas, M. McDowell, I. Hoef, J. Lugtenburg, J. Lagarias, R. Mathies (2000)
Probing the photoreaction mechanism of phytochrome through analysis of resonance Raman vibrational spectra of recombinant analogues.Biochemistry, 39 10
-
O. Nureki, M. Shirouzu, K. Hashimoto, R. Ishitani, T. Terada, M. Tamakoshi, T. Oshima, M. Chijimatsu, K. Takio, D. Vassylyev, T. Shibata, Y. Inoue, S. Kuramitsu, S. Yokoyama (2002)
An enzyme with a deep trefoil knot for the active-site architecture.Acta crystallographica. Section D, Biological crystallography, 58 Pt 7
-
Yoshito Oka, Tomonao Matsushita, N. Mochizuki, Tomomi Suzuki, S. Tokutomi, A. Nagatani (2004)
Functional Analysis of a 450–Amino Acid N-Terminal Fragment of Phytochrome B in ArabidopsisThe Plant Cell Online, 16
-
S. Møller, P. Ingles, G. Whitelam (2002)
The cell biology of phytochrome signalling.The New phytologist, 154 3
-
V. Sineshchekov (1995)
Photobiophysics and photobiochemistry of the heterogeneous phytochrome systemBiochimica et Biophysica Acta, 1228
-
S. Harper, L. Neil, K. Gardner (2003)
Structural Basis of a Phototropin Light SwitchScience, 301
-
T. Lamparter, M. Carrascal, N. Michael, E. Martínez, G. Rottwinkel, J. Abian (2004)
The biliverdin chromophore binds covalently to a conserved cysteine residue in the N-terminus of Agrobacterium phytochrome Agp1.Biochemistry, 43 12
-
T. Lamparter, N. Michael, F. Mittmann, B. Esteban (2002)
Phytochrome from Agrobacterium tumefaciens has unusual spectral properties and reveals an N-terminal chromophore attachment siteProceedings of the National Academy of Sciences of the United States of America, 99
-
W. Rüdiger, Thomas Brandlmeier, I. Bios, A. Gossauer, J. Weller (1980)
Isolation of the Phytochrome Chromophore. The Cleavage Reaction with Hydrogen BromideZeitschrift für Naturforschung C, 35
-
E. Huq, Bassem Al-Sady, P. Quail (2003)
Nuclear translocation of the photoreceptor phytochrome B is necessary for its biological function in seedling photomorphogenesis.The Plant journal : for cell and molecular biology, 35 5
-
Ronja Tasler, T. Moises, N. Frankenberg‐Dinkel (2005)
Biochemical and spectroscopic characterization of the bacterial phytochrome of Pseudomonas aeruginosaThe FEBS Journal, 272
-
A. Blumenstein, Kay Vienken, Ronja Tasler, Janina Purschwitz, D. Veith, N. Frankenberg‐Dinkel, R. Fischer (2005)
The Aspergillus nidulans Phytochrome FphA Represses Sexual Development in Red LightCurrent Biology, 15
-
H. Strauss, J. Hughes, P. Schmieder (2005)
Heteronuclear solution-state NMR studies of the chromophore in cyanobacterial phytochrome Cph1.Biochemistry, 44 23
-
Harald Foerstendorf, E. Mummert, E. Schäfer, Hugo Scheer, Friedrich Siebert (1996)
Fourier-transform infrared spectroscopy of phytochrome: difference spectra of the intermediates of the photoreactions.Biochemistry, 35 33
-
L. Hennig, E. Schäfer (2001)
Both Subunits of the Dimeric Plant Photoreceptor Phytochrome Require Chromophore for Stability of the Far-red Light-absorbing Form*The Journal of Biological Chemistry, 276
-
Warren Butler, K. Norris, H. Siegelman, S Hendricks (1959)
DETECTION, ASSAY, AND PRELIMINARY PURIFICATION OF THE PIGMENT CONTROLLING PHOTORESPONSIVE DEVELOPMENT OF PLANTS.Proceedings of the National Academy of Sciences of the United States of America, 45 12
-
(2005)
A chimeric photoreceptor gene, NEOCHROME, has arisen twice during plant evolution.Proceedings of the National Academy of Sciences of the United States of America, 102 38
-
K. Inomata, M. Hammam, H. Kinoshita, Y. Murata, Htoi Khawn, S. Noack, N. Michael, T. Lamparter (2005)
Sterically Locked Synthetic Bilin Derivatives and Phytochrome Agp1 from Agrobacterium tumefaciens Form Photoinsensitive Pr- and Pfr-like Adducts*Journal of Biological Chemistry, 280
-
Jeong-Il Kim, Yu Shen, Yun-Jeong Han, Joung-Eun Park, Daniel Kirchenbauer, M. Soh, F. Nagy, E. Schäfer, P. Song (2004)
Phytochrome Phosphorylation Modulates Light Signaling by Influencing the Protein–Protein Interaction w⃞The Plant Cell Online, 16
-
K. Yeh, Lagarias Jc (1998)
Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry.Proceedings of the National Academy of Sciences of the United States of America, 95 23
-
C. Kneip, W. Schlamann, S. Braslavsky, P. Hildebrandt, K. Schaffner (2000)
Resonance Raman spectroscopic study of the tryptic 39‐kDa fragment of phytochromeFEBS Letters, 482
-
Chung-Mo Park, Jeong-Il Kim, Song-Sook Yang, Jeong-Gu Kang, Jin-Ho Kang, Jae-Yoon Shim, Young-Ho Chung, Young-Mok Park, Pill-Soon Song (2000)
A second photochromic bacteriophytochrome from Synechocystis sp. PCC 6803: spectral analysis and down-regulation by light.Biochemistry, 39 35
-
B. Karniol, Jeremiah Wagner, Joseph Walker, R. Vierstra (2005)
Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors.The Biochemical journal, 392 Pt 1
-
J. Matysik, Peter Hildebrandt, Willi Schlamann, S. Braslavsky, Kurt Schaffner (1995)
Fourier-transform resonance Raman spectroscopy of intermediates of the phytochrome photocycle.Biochemistry, 34 33
-
P. Quail, M. Boylan, B. Parks, T. Short, Yong Xu, Doris Wagner (1995)
Phytochromes: photosensory perception and signal transductionScience, 268
-
B. Karniol, R. Vierstra (2003)
The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological propertiesProceedings of the National Academy of Sciences of the United States of America, 100
-
T. Lamparter (2004)
Evolution of cyanobacterial and plant phytochromesFEBS Letters, 573
-
R. Vierstra (1993)
Illuminating Phytochrome Functions (There Is Light at the End of the Tunnel), 103
-
C. Park, S. Bhoo, P. Song (2000)
Inter-domain crosstalk in the phytochrome molecules.Seminars in cell & developmental biology, 11 6
-
R. Fedorov, I. Schlichting, E. Hartmann, T. Domratcheva, M. Fuhrmann, P. Hegemann (2003)
Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii.Biophysical journal, 84 4
-
W. Briggs, J. Spudich (2005)
Handbook of Photosensory Receptors -
S. Martinez, A. Wu, N. Glavas, Xiao‐bo Tang, S. Turley, W. Hol, J. Beavo (2002)
The two GAF domains in phosphodiesterase 2A have distinct roles in dimerization and in cGMP bindingProceedings of the National Academy of Sciences of the United States of America, 99
-
B. Montgomery, J. Lagarias (2002)
Phytochrome ancestry: sensors of bilins and light.Trends in plant science, 7 8
-
H. Foerstendorf, C. Benda, W. Gärtner, M. Storf, H. Scheer, F. Siebert (2001)
FTIR studies of phytochrome photoreactions reveal the C=O bands of the chromophore: consequences for its protonation states, conformation, and protein interaction.Biochemistry, 40 49
-
Meng Chen, Yi Tao, Jason Lim, A. Shaw, J. Chory (2005)
Regulation of Phytochrome B Nuclear Localization through Light-Dependent Unmasking of Nuclear-Localization SignalsCurrent Biology, 15
-
A. Nagatani (2004)
Light-regulated nuclear localization of phytochromes.Current opinion in plant biology, 7 6
-
Clark Lagarias, H. Rapoport (1980)
Chromopeptides from phytochrome. The structure and linkage of the PR form of the phytochrome chromophoreJournal of the American Chemical Society, 102
-
John Murphy, J. Lagarias (1997)
The phytofluors: a new class of fluorescent protein probesCurrent Biology, 7
-
J. Weller, Shona Batge, Jennifer Smith, L. Kerckhoffs, V. Sineshchekov, I. Murfet, J. Reid (2004)
A Dominant Mutation in the Pea PHYA Gene Confers Enhanced Responses to Light and Impairs the Light-Dependent Degradation of Phytochrome A1Plant Physiology, 135
-
A. Batschauer, W. Gärtner, S. Braslavsky (2003)
The phytochromes: spectroscopy and function -
T. Lamparter, N. Michael (2005)
Agrobacterium phytochrome as an enzyme for the production of ZZE bilins.Biochemistry, 44 23
-
Y. Mizutani, S. Tokutomi, T. Kitagawa (1994)
Resonance Raman spectra of the intermediates in phototransformation of large phytochrome: deprotonation of the chromophore in the bleached intermediate.Biochemistry, 33 1
-
C. Park, J. Shim, S. Yang, J. Kang, J. Kim, Z. Luka, P. Song (2000)
Chromophore-apoprotein interactions in Synechocystis sp. PCC6803 phytochrome Cph1.Biochemistry, 39 21
-
D. Kehoe, Andrian Gutu (2006)
Responding to color: the regulation of complementary chromatic adaptation.Annual review of plant biology, 57
-
A. Jones, M. Edgerton (1994)
The anatomy of phytochrome, a unique photoreceptor in plants.Seminars in cell biology, 5 5
-
D. Frishman, P. Argos (1995)
Knowledge‐based protein secondary structure assignmentProteins: Structure, 23
-
A. Göller, D. Strehlow, G. Hermann (2005)
The excited-state chemistry of phycocyanobilin: a semiempirical study.Chemphyschem : a European journal of chemical physics and physical chemistry, 6 7
-
A. Batschauer (2007)
Photoreceptors and light signalling -
Seth Davis, Alexander Vener, R. Vierstra (1999)
Bacteriophytochromes: phytochrome-like photoreceptors from nonphotosynthetic eubacteria.Science, 286 5449
-
E. Schäfer, F. Nagy (2006)
PHOTOMORPHOGENESIS IN PLANTS AND BACTERIA -
M. Furuya (1993)
Phytochromes: Their Molecular Species, Gene Families, and Functions, 44
-
J. Thor, B. Borucki, W. Crielaard, H. Otto, T. Lamparter, J. Hughes, K. Hellingwerf, M. Heyn (2001)
Light-induced proton release and proton uptake reactions in the cyanobacterial phytochrome Cph1.Biochemistry, 40 38
-
B. Borucki, H. Otto, G. Rottwinkel, J. Hughes, M. Heyn, T. Lamparter (2003)
Mechanism of Cph1 phytochrome assembly from stopped-flow kinetics and circular dichroism.Biochemistry, 42 46
-
M. Furuya, E. Schäfer (1996)
Photoperception and signalling of induction reactions by different phytochromesTrends in Plant Science, 1
-
Frank Andel, and Lagarias, R. Mathies (1996)
Resonance raman analysis of chromophore structure in the lumi-R photoproduct of phytochrome.Biochemistry, 35 50
-
(2004)
Harnessing phytochrome’s glowing potential -
U. Sweere, K. Eichenberg, J. Lohrmann, Virtudes Mira-Rodado, I. Bäurle, J. Kudla, F. Nagy, E. Schäfer, K. Harter (2001)
Interaction of the Response Regulator ARR4 with Phytochrome B in Modulating Red Light SignalingScience, 294
-
F. Nagy, E. Schäfer (2002)
Phytochromes control photomorphogenesis by differentially regulated, interacting signaling pathways in higher plants.Annual review of plant biology, 53
-
B. Karniol, R. Vierstra (2006)
STRUCTURE, FUNCTION, AND EVOLUTION OF MICROBIAL PHYTOCHROMES -
K. Zhao, Yong Ran, Mei Li, Ya-Nan Sun, Ming Zhou, M. Storf, M. Kupka, S. Böhm, C. Bubenzer, H. Scheer (2004)
Photochromic biliproteins from the cyanobacterium Anabaena sp. PCC 7120: lyase activities, chromophore exchange, and photochromism in phytochrome AphA.Biochemistry, 43 36
-
(1972)
Biosynthesis and dark transformations of phytochrome -
R. Sharrock, T. Clack (2004)
Heterodimerization of type II phytochromes in Arabidopsis.Proceedings of the National Academy of Sciences of the United States of America, 101 31
-
P. Quail (1991)
Phytochrome: a light-activated molecular switch that regulates plant gene expression.Annual review of genetics, 25
-
L. Pratt (1982)
Phytochrome: The Protein MoietyAnnual Review of Plant Biology, 33
-
J. Harborne (1993)
Pigment of the imagination—a history of phytochrome researchPhytochemistry, 32
-
Stephen Fodor, J. Lagarias, R. Mathies (1990)
Resonance Raman analysis of the Pr and Pfr forms of phytochrome.Biochemistry, 29 50
-
B. Esteban, M. Carrascal, J. Abian, T. Lamparter (2005)
Light-induced conformational changes of cyanobacterial phytochrome Cph1 probed by limited proteolysis and autophosphorylation.Biochemistry, 44 2
-
M. Mroginski, D. Murgida, D. Stetten, C. Kneip, F. Mark, P. Hildebrandt (2004)
Determination of the chromophore structures in the photoinduced reaction cycle of phytochrome.Journal of the American Chemical Society, 126 51
-
S. Bhoo, S. Davis, Joseph Walker, B. Karniol, R. Vierstra (2001)
Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophoreNature, 414
-
J. Parkinson (1993)
Signal transduction schemes of bacteriaCell, 73
-
S. Henikoff, J. Henikoff (1992)
Amino acid substitution matrices from protein blocks.Proceedings of the National Academy of Sciences of the United States of America, 89 22
-
N. Frankenberg, J. Lagarias (2003)
83 – Biosynthesis and Biological Functions of Bilins -
E. Giraud, Joël Fardoux, N. Fourrier, L. Hannibal, B. Genty, P. Bouyer, B. Dreyfus, A. Verméglio (2002)
Bacteriophytochrome controls photosystem synthesis in anoxygenic bacteriaNature, 417
-
Jeremiah Wagner, J. Brunzelle, K. Forest, R. Vierstra (2005)
A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochromeNature, 438
-
W. Taylor (2000)
A deeply knotted protein structure and how it might foldNature, 406
-
T. Elich, J. Chory (1997)
Biochemical characterization of Arabidopsis wild-type and mutant phytochrome B holoproteins.The Plant cell, 9
-
M. Dieterle, Diana Bauer, C. Büche, M. Krenz, E. Schäfer, Thomas Kretsch (2004)
A new type of mutation in phytochrome A causes enhanced light sensitivity and alters the degradation and subcellular partitioning of the photoreceptor.The Plant journal : for cell and molecular biology, 41 1
-
Kuo-Chen Yeh, Shu-Hsing Wu, John Murphy, J. Lagarias (1997)
A cyanobacterial phytochrome two-component light sensory system.Science, 277 5331
-
Meng Chen, R. Schwab, J. Chory (2003)
Characterization of the requirements for localization of phytochrome B to nuclear bodiesProceedings of the National Academy of Sciences of the United States of America, 100
-
A. Briggs, H. Rice (1972)
Phytochrome: Chemical and Physical Properties and Mechanism of ActionAnnual Review of Plant Biology, 23
-
Z. Jiang, L. Swem, B. Rushing, S. Devanathan, G. Tollin, C. Bauer (1999)
Bacterial photoreceptor with similarity to photoactive yellow protein and plant phytochromes.Science, 285 5426
-
Jeong-Il Kim, Jeoung-Eun Park, Xristo Zarate, P. Song (2005)
Phytochrome phosphorylation in plant light signalingPhotochemical & Photobiological Sciences, 4
-
J. Casal, Laura Luccioni, Karina Oliverio, H. Boccalandro (2003)
Light, phytochrome signalling and photomorphogenesis in ArabidopsisPhotochemical & Photobiological Sciences, 2
-
T. Hübschmann, H. Jorissen, T. Börner, W. Gärtner, N. Marsac (2001)
Phosphorylation of proteins in the light-dependent signalling pathway of a filamentous cyanobacterium.European journal of biochemistry, 268 12
-
I. Schepens, P. Duek, C. Fankhauser (2004)
Phytochrome-mediated light signalling in Arabidopsis.Current opinion in plant biology, 7 5
-
Tilman Lamparter, B. Esteban, Jon Hughes (2001)
Phytochrome Cph1 from the cyanobacterium Synechocystis PCC6803. Purification, assembly, and quaternary structure.European journal of biochemistry, 268 17
-
Thomas Kretsch, C. Poppe, Eberhard Schäfer (2000)
A new type of mutation in the plant photoreceptor phytochrome B causes loss of photoreversibility and an extremely enhanced light sensitivity.The Plant journal : for cell and molecular biology, 22 3
-
(1993)
Illuminating phytochrome functions. Plant Physiol. 103:679–84 This paper presents a pivotal breakthrough: the first crystal structure of a phytochrome photosensory core -
D. Kehoe, A. Grossman (1996)
Similarity of a Chromatic Adaptation Sensor to Phytochrome and Ethylene ReceptorsScience, 273
-
M. Nakasako, M. Wada, S. Tokutomi, Kotaro Yamamoto, J. Sakai, M. Kataoka, F. Tokunaga, M. Furuya (1990)
QUATERNARY STRUCTURE OF PEA PHYTOCHROME I DIMER STUDIED WITH SMALL‐ANGLE X‐RAY SCATTERING and ROTARY‐SHADOWING ELECTRON MICROSCOPYPhotochemistry and Photobiology, 52
-
A. Froehlich, B. Noh, R. Vierstra, J. Loros, J. Dunlap (2005)
Genetic and Molecular Analysis of Phytochromes from the Filamentous Fungus Neurospora crassaEukaryotic Cell, 4
-
Harry Smith (1995)
Physiological and Ecological Function within the Phytochrome Family, 46
- Publisher
- Annual Reviews
- Copyright
- Copyright © 2006 by Annual Reviews. All rights reserved
- ISSN
- 1040-2519
- DOI
- 10.1146/annurev.arplant.56.032604.144208
- pmid
- 16669784
- Publisher site
- See Article on Publisher Site
Abstract
Abstract Phytochromes are a widespread family of red/far-red responsive photoreceptors first discovered in plants, where they constitute one of the three main classes of photomorphogenesis regulators. All phytochromes utilize covalently attached bilin chromophores that enable photoconversion between red-absorbing (P r ) and far-red-absorbing (P fr ) forms. Phytochromes are thus photoswitchable photosensors; canonical phytochromes have a conserved N-terminal photosensory core and a C-terminal regulatory region, which typically includes a histidine-kinase-related domain. The discovery of new bacterial and cyanobacterial members of the phytochrome family within the last decade has greatly aided biochemical and structural characterization of this family, with the first crystal structure of a bacteriophytochrome photosensory core appearing in 2005. This structure and other recent biochemical studies have provided exciting new insights into the structure of phytochrome, the photoconversion process that is central to light sensing, and the mechanism of signal transfer by this important family of photoreceptors.
Journal
Annual Review of Plant Biology – Annual Reviews
Published: Jun 2, 2006