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Molecular characterization of Brassica napus NAC domain transcriptional activators induced in response to biotic and abiotic stress
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ChaeMJLeeJSNamMHChoKHongJYYiSASuhSCYoonISA rice dehydration-inducible SNF1 related protein kinase 2 phosphorylates an abscisic acid responsive element binding factor and associates with ABA signalingPlant Mol Biol20076315116910.1007/s11103-006-9079-x16977424ChaeMJLeeJSNamMHChoKHongJYYiSASuhSCYoonISA rice dehydration-inducible SNF1 related protein kinase 2 phosphorylates an abscisic acid responsive element binding factor and associates with ABA signalingPlant Mol Biol20076315116910.1007/s11103-006-9079-x16977424, ChaeMJLeeJSNamMHChoKHongJYYiSASuhSCYoonISA rice dehydration-inducible SNF1 related protein kinase 2 phosphorylates an abscisic acid responsive element binding factor and associates with ABA signalingPlant Mol Biol20076315116910.1007/s11103-006-9079-x16977424
(MoumeniASatohKKondohHAsanoTHosakaAVenuprasaRSerrajRKumarALeungHKikuchiSComparative analysis of root transcriptome profiles of two pairs of drought-tolerant and susceptible rice near-isogenic lines under different drought stressBMC Plant Biol20111117410.1186/1471-2229-11-17422136218)
MoumeniASatohKKondohHAsanoTHosakaAVenuprasaRSerrajRKumarALeungHKikuchiSComparative analysis of root transcriptome profiles of two pairs of drought-tolerant and susceptible rice near-isogenic lines under different drought stressBMC Plant Biol20111117410.1186/1471-2229-11-17422136218MoumeniASatohKKondohHAsanoTHosakaAVenuprasaRSerrajRKumarALeungHKikuchiSComparative analysis of root transcriptome profiles of two pairs of drought-tolerant and susceptible rice near-isogenic lines under different drought stressBMC Plant Biol20111117410.1186/1471-2229-11-17422136218, MoumeniASatohKKondohHAsanoTHosakaAVenuprasaRSerrajRKumarALeungHKikuchiSComparative analysis of root transcriptome profiles of two pairs of drought-tolerant and susceptible rice near-isogenic lines under different drought stressBMC Plant Biol20111117410.1186/1471-2229-11-17422136218
(2012)
Mol Genet Genomics
K. Doi, Aeni Hosaka, Toshifumi Nagata, Kouji Satoh, Kohji Suzuki, R. Mauleon, M. Mendoza, R. Bruskiewich, S. Kikuchi (2008)
Development of a novel data mining tool to find cis-elements in rice gene promoter regionsBMC Plant Biology, 8
(ChristiansonJAWilsonIWLlewellynDJDennisESThe low oxygen induced NAC domain transcription factor ANAC102 affects viability of Arabidopsis thaliana seeds following low-oxygen treatmentPlant Physiol20091491724173810.1104/pp.108.13191219176720)
ChristiansonJAWilsonIWLlewellynDJDennisESThe low oxygen induced NAC domain transcription factor ANAC102 affects viability of Arabidopsis thaliana seeds following low-oxygen treatmentPlant Physiol20091491724173810.1104/pp.108.13191219176720ChristiansonJAWilsonIWLlewellynDJDennisESThe low oxygen induced NAC domain transcription factor ANAC102 affects viability of Arabidopsis thaliana seeds following low-oxygen treatmentPlant Physiol20091491724173810.1104/pp.108.13191219176720, ChristiansonJAWilsonIWLlewellynDJDennisESThe low oxygen induced NAC domain transcription factor ANAC102 affects viability of Arabidopsis thaliana seeds following low-oxygen treatmentPlant Physiol20091491724173810.1104/pp.108.13191219176720
(CzechowskiTStittMAltmannTUdvardiMKScheibleWRGenome-wide identification and testing of superior reference genes for transcript normalization in ArabidopsisPlant Physiol200513951710.1104/pp.105.06374316166256)
CzechowskiTStittMAltmannTUdvardiMKScheibleWRGenome-wide identification and testing of superior reference genes for transcript normalization in ArabidopsisPlant Physiol200513951710.1104/pp.105.06374316166256CzechowskiTStittMAltmannTUdvardiMKScheibleWRGenome-wide identification and testing of superior reference genes for transcript normalization in ArabidopsisPlant Physiol200513951710.1104/pp.105.06374316166256, CzechowskiTStittMAltmannTUdvardiMKScheibleWRGenome-wide identification and testing of superior reference genes for transcript normalization in ArabidopsisPlant Physiol200513951710.1104/pp.105.06374316166256
The NAC (NAM, ATAF1/2 and CUC2) genes are plant-specific transcriptional factors known to play diverse roles in various plant developmental processes. We describe the rice (Oryza sativa) OsNAC genes expression profiles (GEPs) under normal and water-deficit treatments (WDTs). The GEPs of the OsNAC genes were analyzed in 25 tissues covering the entire life cycle of Minghui 63. High expression levels of 17 genes were demonstrated in certain tissues under normal conditions suggesting that these genes may play important roles in specific organs. We determined that 16 genes were differentially expressed under at least 1 phytohormone (NAA, GA3, KT, SA, ABA, and JA) treatment. To investigate the GEPs in the root, leaf, and panicle of three rice genotypes [e.g., 2 near-isogenic lines (NILs) and IR64], we used two NILs from a common genetic combination backcross developed by Aday Selection and IR64. WDTs were applied using the fraction of transpirable soil water at severe, mild, and control conditions. Transcriptomic analysis using a 44K oligoarray from Agilent was performed on all the tissue samples. We identified common and specific genes in all tissues from the two NILs under both WDTs, and the majority of the OsNAC genes that were activated were in the drought-tolerant IR77298-14-1-2-B-10 line compared with the drought-susceptible IR77298-14-1-2-B-13 or IR64. In IR77298-14-1-2-B-10, seventeen genes were very specific in their expression levels. Approximately 70 % of the genes from subgroups SNAC and NAM/CUC3 were activated in the leaf, but 37 % genes from subgroup SND were inactivated in the root compared with the control under severe stress conditions. These results provide a useful reference for the cloning of candidate genes from the specific subgroup for further functional analysis.
Molecular Genetics and Genomics – Springer Journals
Published: Apr 12, 2012
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