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N. Olszewski, T.‐P. Sun, X. Gubler (2002)
Gibberellin signalling: biosynthesis, catabolism, and response pathwaysNucleic Acids Res., 2002
M. Ogawa, A. Hanada, Y. Yamauchi, A. Kuwahara, Y. Kamiya, S. Yamaguchi (2003)
Gibberellin biosynthesis and response during Arabidopsis seed germinationPlant Physiol., 15
Jennifer To, G. Haberer, F. Ferreira, J. Deruère, M. Mason, G. Schaller, J. Alonso, J. Ecker, J. Kieber (2004)
Type-A Arabidopsis Response Regulators Are Partially Redundant Negative Regulators of Cytokinin Signaling Online version contains Web-only data.The Plant Cell Online, 16
K. Thompson (2000)
Seeds: The Ecology of Regeneration in Plant Communities.
H.W.M. Hilhorst, C.M. Karssen (1992)
Seed dormancy and germination: the role of abscisic acid and gibberelins and the importance of hormone mutantsSeed Sci. Res., 11
R.C. Gentleman, V.J. Carey, D.M. Bates (2004)
Bioconductor: open software development for computational biology and bioinformaticsPlant Physiol., 5
J. Schwachtje, I.T. Baldwin (2004)
Smoke exposure alters endogenous gibberellin and abscisic acid pools and gibberellin sensitivity while eliciting germination in the post‐fire annual, Nicotiana attenuataPlant Cell, 14
M. Delledonne (2005)
NO news is good news for plantsSeed Sci. Res., 8
W. Finch‐Savage, G. Leubner‐Metzger (2006)
Seed dormancy and the control of germination.The New phytologist, 171 3
C. O'Neill, S. Gill, D. Hobbs, C. Morgan, I. Bancroft (2003)
Natural variation for seed oil composition in Arabidopsis thaliana.Phytochemistry, 64 6
K. Donohue (2005)
Seeds and seasons: interpreting germination timing in the fieldSeed Science Research, 15
David Craigon, Nick James, J. Okyere, Janet Higgins, J. Jotham, S. May (2004)
NASCArrays: a repository for microarray data generated by NASC's transcriptomics serviceNucleic acids research, 32 Database issue
H.W.M. Hilhorst, C.M. Karssen (1989)
Nitrate reductase independent stimulation of seed germination in Sisymbrium officinale L (hedge mustard) by light and nitrate.Curr. Opin. Plant Biol., 63
P. Bethke, F. Gubler, J. Jacobsen, Russell Jones (2004)
Dormancy of Arabidopsis seeds and barley grains can be broken by nitric oxidePlanta, 219
C. Alonso‐Blanco, L. Bentsink, C. Hanhart, H. Vries, M. Koornneef (2003)
Analysis of natural allelic variation at seed dormancy loci of Arabidopsis thaliana.Genetics, 164 2
C.W. Vertucci, J.J. Farrant (1995)
Seed Development and Germination.
M. Fenner, K. Thompson (2005)
The Ecology of Seeds: References
S. Rozen, H. Skaletsky (2000)
Bioinformatics Methods and Protocols: Methods in Molecular BiologyAnal. Biochem.
Sonia Ali-Rachedi, D. Bouinot, M. Wagner, M. Bonnet, B. Sotta, P. Grappin, M. Jullien (2004)
Changes in endogenous abscisic acid levels during dormancy release and maintenance of mature seeds: studies with the Cape Verde Islands ecotype, the dormant model of Arabidopsis thalianaPlanta, 219
K. Donohue (2005)
Seeds and seasons: interpreting germination timing in the fieldNew Phytol., 15
H. Hilhorst, C. Karssen (1989)
Nitrate Reductase Independent Stimulation of Seed Germination in Sisymbrium officinale L. (Hedge Mustard) by Light and NitrateAnnals of Botany, 63
B. Kucera, M. Cohn, G. Leubner‐Metzger (2005)
Plant hormone interactions during seed dormancy release and germinationSeed Science Research, 15
J. Bove, P. Lucas, B. Godin, L. Ogé, M. Jullien, P. Grappin (2005)
Gene expression analysis by cDNA-AFLP highlights a set of new signaling networks and translational control during seed dormancy breaking in Nicotiana plumbaginifoliaPlant Molecular Biology, 57
L. Bentsink, Jemma Jowett, C. Hanhart, M. Koornneef (2006)
Cloning of DOG1, a quantitative trait locus controlling seed dormancy in ArabidopsisProceedings of the National Academy of Sciences, 103
H.W.M. Hilhorst (1990a)
Dose–response analysis of factors involved in germination and secondary dormancy of seeds of Sisymbrium offinicale:I. Phytochrome.Plant Growth Reg., 94
M. Eicks, V. Maurino, S. Knappe, U.I. Flugge, K. Fischer (2002)
The plastidic pentose phosphate translocator represents a link between the cytosolic and the plastidic pentose phosphate pathways in plantsGenome Biol., 128
N. Olszewski, Tai-ping Sun, F. Gubler (2002)
Gibberellin signaling: biosynthesis, catabolism, and response pathways.The Plant cell, 14 Suppl
Alessandro Alboresi, C. Gestin, M. Leydecker, M. Bedu, Christian Meyer, H. Truong (2005)
Nitrate, a signal relieving seed dormancy in Arabidopsis.Plant, cell & environment, 28 4
J. Baskin, C. Baskin (2004)
A classification system for seed dormancySeed Science Research, 14
C. Baskin, J. Baskin (1998)
Seeds: Ecology, Biogeography, and, Evolution of Dormancy and Germination
W. Huber, A. Von Hydebreck, H. Sultmann, A. Poustka, M. Vingron (2003)
Parameter estimation for the calibration and variance stabilization of microarray dataPhysiol. Plant.
Monica Carabelli, G. Sessa, S. Baima, G. Morelli, I. Ruberti (1993)
The Arabidopsis Athb-2 and -4 genes are strongly induced by far-red-rich light.The Plant journal : for cell and molecular biology, 4 3
A.C. Leopold, R. Glenister, M.A. Cohn (1988)
Relationship between water content and after ripening in red ricePlant Cell, 74
M. Koornneef, C. Alonso‐Blanco, L. Bentsink, H. Blankestijn‐de Vries, I. Debeajon, C.J. Hanhart, K.M. Léonkloosterziel, T. Peeters, V. Raz (2000)
Dormancy in PlantsNucl. Acids Res.
M. Koornneef, C. Alonso‐Blanco, L. Bentsink, H. Vries, I. Debeaujon, C. Hanhart, K. Léon-Kloosterziel, A. Peeters, V. Raz (2000)
The genetics of seed dormancy in Arabidopsis thaliana.
I. Debeaujon, M. Koornneef (2000)
Gibberellin requirements for Arabidopsis seed germination is determined both by testa characteristics and embryonic abscisic acidPlant Growth Reg., 122
H. Schoof, P. Zaccaria, H. Gundlach, K. Lemcke, S. Rudd, G. Kolesov, R. Arnold, H.W. Mewes, K.F. Mayer (2002)
MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genomePlant Cell, 30
M. Delledonne (2005)
NO news is good news for plants.Current opinion in plant biology, 8 4
I. Debeaujon, M. Koornneef (2000)
Gibberellin requirement for Arabidopsis seed germination is determined both by testa characteristics and embryonic abscisic acid.Plant physiology, 122 2
S. Rhee, W. Beavis, T. Berardini, Guanghong Chen, D. Dixon, Aisling Doyle, M. Garcia-Hernandez, E. Huala, Gabriel Lander, Mary Montoya, Neil Miller, L. Mueller, S. Mundodi, L. Reiser, Julie Tacklind, D. Weems, Yihe Wu, Iris Xu, Danny Yoo, Jungwon Yoon, Peifen Zhang (2003)
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and communityNucleic acids research, 31 1
M. Cohn (1996)
Operational and philosophical decisions in seed dormancy researchSeed Science Research, 6
N. Crawford (2006)
Mechanisms for nitric oxide synthesis in plants.Journal of experimental botany, 57 3
R. Probert, M. Fenner (2000)
The role of temperature in the regulation of seed dormancy and germination.
K. Thompson, M. Fenner (2000)
The functional ecology of soil seed banks.
A. Leopold, R. Glenister, M. Cohn (1988)
Relationship between water content and afterripening in-red ricePhysiologia Plantarum, 74
K. Nakabayashi, Masanori Okamoto, T. Koshiba, Y. Kamiya, E. Nambara (2005)
Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed.The Plant journal : for cell and molecular biology, 41 5
I.E. Burbulis, B. Winkel‐Shirley (1999)
Interactions among enzymes of the Arabidopsis flavonoid biosynthetic pathwayPlant J., 99
W. Huber, A. Heydebreck, H. Sueltmann, A. Poustka, M. Vingron (2003)
Parameter estimation for the calibration and variance stabilization of microarray dataStatistical Applications in Genetics and Molecular Biology, 2
H. Schoof, P. Zaccaria, H. Gundlach, K. Lemcke, S. Rudd, G. Kolesov, Roland Arnold, H. Mewes, K. Mayer (2002)
MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genomeNucleic acids research, 30 1
Y. Benjamini, Y. Hochberg (1995)
Controlling the false discovery rate: a practical and powerful approach to multiple testingJournal of the royal statistical society series b-methodological, 57
C. Wan, T. Wilkins (1994)
A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.).Analytical biochemistry, 223 1
J.P. To, G. Haberer, F.J. Ferreira, J. Deruere, M.G. Mason, G.E. Schaller, J.M. Alonso, J.R. Ecker, J.J. Kieber (2004)
Type‐A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signalling, 16
I. Batak, M. Devic, Z. Giba, D. Grubisi, K.L. Poff, R. Konjevic (2002)
The effects of potassium nitrate and NO‐donors on phytochrome A‐ and phytochrome B‐specific induced germination of Arabidopsis thaliana seedsJ. R. Stat. Soc. B., 12
I. Burbulis, Brenda Winkel-Shirley (1999)
Interactions among enzymes of the Arabidopsis flavonoid biosynthetic pathway.Proceedings of the National Academy of Sciences of the United States of America, 96 22
M. Derkx, E. Vermeer, C. Karssen (1994)
Gibberellins in seeds of Arabidopsis thaliana: biological activities, identification and effects of light and chilling on endogenous levelsPlant Growth Regulation, 15
E.H. Roberts, R.D. Smith (1977)
The Physiology and Biochemistry of Seed Dormancy and Germination.J. Ecol.
Cassandra Cadman, P. Toorop, H. Hilhorst, W. Finch‐Savage (2006)
Gene expression profiles of Arabidopsis Cvi seeds during dormancy cycling indicate a common underlying dormancy control mechanism.The Plant journal : for cell and molecular biology, 46 5
H. Hilhorst, C. Karssen (1992)
Seed dormancy and germination: the role of abscisic acid and gibberellins and the importance of hormone mutantsPlant Growth Regulation, 11
S. Penfield, Eve-Marie Josse, R. Kannangara, Alison Gilday, K. Halliday, I. Graham (2005)
Cold and Light Control Seed Germination through the bHLH Transcription Factor SPATULACurrent Biology, 15
F. Hay, A. Mead, K. Manger, Fiona Wilson (2003)
One-step analysis of seed storage data and the longevity of Arabidopsis thaliana seeds.Journal of experimental botany, 54 384
Ivana Batak, M. Devic, Zlatko Gibal, D. Grubišić, K. Poff, R. Konjević (2002)
The effects of potassium nitrate and NO-donors on phytochrome A- and phytochrome B-specific induced germination of Arabidopsis thaliana seedsSeed Science Research, 12
J.D. Bewley (1997)
Seed germination and dormancyPlant Mol. Biol., 9
J. Casal, R. Sánchez (1998)
Phytochromes and seed germinationSeed Science Research, 8
M. Fenner, K. Thompson (2005)
The ecology of seedsJ. Expt. Bot.
J. Schwachtje, I. Baldwin (2004)
Smoke exposure alters endogenous gibberellin and abscisic acid pools and gibberellin sensitivity while eliciting germination in the post-fire annual, Nicotiana attenuataSeed Science Research, 14
M. Eicks, V. Maurino, Silke Knappe, U. Flügge, K. Fischer (2002)
The Plastidic Pentose Phosphate Translocator Represents a Link between the Cytosolic and the Plastidic Pentose Phosphate Pathways in Plants1Plant Physiology, 128
N. Kruger, A. Schaewen (2003)
The oxidative pentose phosphate pathway: structure and organisation.Current opinion in plant biology, 6 3
T. Toyomasu, H. Kawaide, W. Mitsuhashi, Y. Inoue, Y. Kamiya (1998)
Phytochrome regulates gibberellin biosynthesis during germination of photoblastic lettuce seeds.Plant physiology, 118 4
M. Parani, S. Rudrabhatla, Rachel Myers, Heatherbea Weirich, Bruce Smith, D. Leaman, S. Goldman (2004)
Microarray analysis of nitric oxide responsive transcripts in Arabidopsis.Plant biotechnology journal, 2 4
L. Rajjou, K. Gallardo, I. Debeaujon, J. Vandekerckhove, C. Job, D. Job (2004)
The effect of alpha‐amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germinationPlant Cell, 134
N.J. Kruger, A. Von Schaewen (2003)
The oxidative pentose phosphate pathway: structure and organizationPlant J., 6
S. Rozen, H. Skaletsky (2000)
Primer3 on the WWW for general users and for biologist programmers.Methods in molecular biology, 132
K. Steadman, A. Crawford, R. Gallagher (2003)
Dormancy release in Lolium rigidum seeds is a function of thermal after-ripening time and seed water content.Functional plant biology : FPB, 30 3
Y. Yamauchi, M. Ogawa, A. Kuwahara, A. Hanada, Y. Kamiya, S. Yamaguchi (2004)
Activation of gibberellin biosynthesis and response pathways by low temperature during imbibition of Arabidopsis thaliana seeds, 16
Mikihiro Ogawa, A. Hanada, Y. Yamauchi, A. Kuwahara, Y. Kamiya, Shinjiro Yamaguchi (2003)
Gibberellin Biosynthesis and Response during Arabidopsis Seed Germination Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.011650.The Plant Cell Online, 15
N.M. Crawford (2006)
Mechanisms for nitric oxide synthesis in plantsCurr. Opin. Plant Biol., 57
L. Vleeshouwers, H. Bouwmeester, C. Karssen (1995)
Redefining seed dormancy: an attempt to integrate physiology and ecologyJournal of Ecology, 83
Y. Yamauchi, Mikihiro Ogawa, A. Kuwahara, A. Hanada, Y. Kamiya, Shinjiro Yamaguchi (2004)
Activation of Gibberellin Biosynthesis and Response Pathways by Low Temperature during Imbibition of Arabidopsis thaliana Seeds On-line version contains Web-only data.The Plant Cell Online, 16
J. Bewley (1997)
Seed Germination and Dormancy.The Plant cell, 9
M.P.M. Derkx, E. Vermeer, C.M. Karssen (1994)
Gibberellins in seeds of Arabidopsis thaliana: biological activities, identification and effects of light and chilling on endogenous levelsPlant Physiol., 15
Lay-Hong Ang, Sudip Chattopadhyay, N. Wei, T. Oyama, K. Okada, A. Batschauer, X. Deng (1998)
Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development.Molecular cell, 1 2
S.Y. Rhee, W. Beavis, T.Z. Berardini (2003)
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and communityPlant Physiol., 31
S. Penfield, E.‐M. Josse, R. Kannangara, A.D. Gilday, K.J. Halliday, I.A. Graham (2005)
Cold and light control seed germination through the bHLH transcription factor SPATULASeed Sci. Res., 15
CSC. Cadman, P.E. Toorop, H.W.M. Hilhorst, W.E. Finch‐Savage (2006)
Gene expression profiles of Arabidopsis Cvi seeds during cycling through dormant and non‐dormant states indicate a common underlying dormancy control mechanismSeed Sci. Res., 46
M. Carabelli, G. Sessa, S. Baima, G. Morelli, I. Ruberti (1993)
The Arabidopsis Athb‐2 and ‐4 genes are strongly induced by far‐red‐rich lightSeed Sci. Res., 4
N. Bair, S. Meyer, P. Allen (2006)
A hydrothermal after-ripening time model for seed dormancy loss in Bromus tectorum L.Seed Science Research, 16
K. Thompson, J. Bewley, M. Black (1986)
Seeds: Physiology of Development and Germination
Rongchen Wang, K. Guegler, S. Labrie, N. Crawford (2000)
Genomic Analysis of a Nutrient Response in Arabidopsis Reveals Diverse Expression Patterns and Novel Metabolic and Potential Regulatory Genes Induced by NitratePlant Cell, 12
D.J. Craigon, N. James, J. Okyere, J. Higgins, J. Jotham, S. May (2004)
NASC Arrays: a repository for microarray data generated by NASC’s transcriptomics servicePlant Physiol., 32
H.W.M. Hilhorst (1990b)
Dose‐response analysis of factors involved in germination and secondary dormancy of seeds of Sisymbrium offinicale: II. NitrateStats. Appl. Gene. Mol. Bio., 94
M.A. Cohn (1996)
Operational and philosophical decisions in seed dormancy researchJ. Exp. Bot., 6
A. Marchler-Bauer, John Anderson, P. Cherukuri, C. DeWeese-Scott, L. Geer, M. Gwadz, Siqian He, David Hurwitz, J. Jackson, Zhaoxi Ke, C. Lanczycki, Cynthia Liebert, Chunlei Liu, Fu Lu, Gabriele Marchler, M. Mullokandov, Benjamin Shoemaker, V. Simonyan, James Song, P. Thiessen, R. Yamashita, J. Yin, Dachuan Zhang, S. Bryant (2004)
CDD: a Conserved Domain Database for protein classificationNucleic Acids Research, 33
R. Gentleman, V. Carey, D. Bates, B. Bolstad, M. Dettling, S. Dudoit, B. Ellis, L. Gautier, Yongchao Ge, Jeff Gentry, K. Hornik, T. Hothorn, W. Huber, S. Iacus, R. Irizarry, F. Leisch, Cheng Li, M. Maechler, A. Rossini, G. Sawitzki, Colin Smith, Gordon Smyth, L. Tierney, J. Yang, Jianhua Zhang (2004)
Bioconductor: open software development for computational biology and bioinformaticsGenome Biology, 5
H. Hilhorst (1990)
Dose-Response Analysis of Factors Involved in Germination and Secondary Dormancy of Seeds of Sisymbrium officinale: I. Phytochrome.Plant physiology, 94 3
M. Parani, S. Rudrabhatla, R. Myers, H. Weirich, B. Smith, D.W. Leaman, S.L. Goldman (2004)
Microarray analysis of nitric oxide responsive transcripts in ArabidopsisNucleic Acids Res., 2
W.E. Finch‐Savage, G. Leubner‐Metzger (2006)
Seed dormancy and the control of germinationPlant Physiology, 171
Loïc Rajjou, K. Gallardo, I. Debeaujon, J. Vandekerckhove, C. Job, D. Job (2004)
The Effect of α-Amanitin on the Arabidopsis Seed Proteome Highlights the Distinct Roles of Stored and Neosynthesized mRNAs during Germination1Plant Physiology, 134
D.E. Brown, A.M. Rashotte, A.S. Murphy, J. Normanly, B.W. Tague, W.A. Peer, L. Taiz, G.K. Muday (2001)
Flavonoids act as negative regulators of auxin transport in vivo in ArabidopsisPlant J., 126
F.R. Hay, A. Mead, K. Manger, F.J. Wilson (2003)
One‐step analysis of seed storage data and the longevity of Arabidopsis thaliana seedsAnn. Bot., 54
J.J. Casal, R.A. Sánchez (1998)
Phytochromes and seed germinationNucleic Acids Res., 8
Dana Brown, A. Rashotte, A. Murphy, J. Normanly, B. Tague, W. Peer, L. Taiz, G. Muday (2001)
Flavonoids act as negative regulators of auxin transport in vivo in arabidopsis.Plant physiology, 126 2
The depth of seed dormancy can be influenced by a number of different environmental signals, but whether a common mechanism underlies this apparently similar response has yet to be investigated. Full‐genome microarrays were used for a global transcript analysis of Arabidopsis thaliana Cape Verde Island accession seeds exposed to dry after‐ripening (AR), or low temperature, nitrate and light when imbibed. Germination studies showed that the sensitivity of imbibed seeds to low temperature, nitrate and light was dependant upon the length of time spent AR following harvest. Seeds had an absolute requirement for light to complete dormancy release in all conditions, but this effect required an exposure to a prior dormancy relieving environment. Principal component analyses of the expression patterns observed grouped physiological states in a way that related to the depth of seed dormancy, rather than the type of environmental exposure. Furthermore, opposite changes in transcript abundance of genes in sets associated with dormancy, or dormancy relief through AR, were also related to the depth of dormancy and common to different environments. Besides these common quantitative changes, environment‐specific gene expression patterns during dormancy relief are also described. For example, higher transcript abundance for genes linked to the process of nitrate accumulation, and nitrate reduction was associated with dormancy relief. The quantity of GA3ox1 transcripts increased during dormancy relief in all conditions, in particular when dormancy relief was completed by exposure to light. This contrasts with transcripts linked to abscisic acid (ABA) synthesis, which declined. The results are consistent with a role for the ABA/gibberellic acid balance in integrating dormancy‐relieving environmental signals.
The Plant Journal – Wiley
Published: Jul 1, 2007
Keywords: ; ; ; ; ;
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