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B. Usadel, A. Nagel, D. Steinhauser (2006)
PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experimentsPlant Physiol., 7
Lim (2007)
Leaf senescenceAnn. Rev. Plant Biol., 58
Camila Caldana, W. Scheible, Bernd Mueller-Roeber, S. Ruzicic (2007)
A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factorsPlant Methods, 3
V. Buchanan-Wollaston, C. Ainsworth (1997)
Leaf senescence in Brassica napus: cloning of senescence related genes by subtractive hybridisationPlant Molecular Biology, 33
Reza Saleki, Paul Young, Daniel Lefebvre (1993)
Mutants of Arabidopsis thaliana Capable of Germination under Saline Conditions, 101
P. Gregersen, P. Holm (2007)
Transcriptome analysis of senescence in the flag leaf of wheat (Triticum aestivum L.).Plant biotechnology journal, 5 1
A. Skirycz, Amandine Radziejwoski, Wolfgang Busch, M. Hannah, Joanna Czeszejko, M. Kwasniewski, M. Zanor, J. Lohmann, L. Veylder, I. Witt, B. Mueller‐Roeber (2008)
The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana.The Plant journal : for cell and molecular biology, 56 5
L.M. Weaver, S. Gan, B. Quirino, R.M. Amasino (1998)
A comparison of the expression patterns of several senescence‐associated genes in response to stress and hormone treatmentPLoS ONE, 37
R. Jefferson, T. Kavanagh, M. Bevan (1987)
GUS fusions: beta‐glucuronidase as a sensitive and versatile gene fusion marker in higher plants.The EMBO Journal, 6
C. Uauy, A. Distelfeld, T. Fahima, A. Blechl, J. Dubcovsky (2006)
A NAC Gene Regulating Senescence Improves Grain Protein, Zinc, and Iron Content in WheatScience, 314
K. Kaufmann, J. Muiño, R. Jáuregui, C. Airoldi, C. Smaczniak, P. Krajewski, G. Angenent (2009)
Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis FlowerPLoS Biology, 7
Yongfeng Guo, S. Gan (2006)
AtNAP, a NAC family transcription factor, has an important role in leaf senescence.The Plant journal : for cell and molecular biology, 46 4
A. Saeed, V. Sharov, J. White, J. Li, W. Liang, N. Bhagabati, J. Braisted, M. Kłapa, T. Currier, M. Thiagarajan, A. Sturn, M. Snuffin, A. Rezantsev, D. Popov, A. Ryltsov, E. Kostukovich, I. Borisovsky, Z. Liu, A. Vinsavich, V. Trush, John Quackenbush (2003)
TM4: a free, open-source system for microarray data management and analysis.BioTechniques, 34 2
P. Zimmermann, M. Hirsch‐Hoffmann, L. Hennig, W. Gruissem (2004)
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolboxPlant J., 136
H. Ooka, Kouji Satoh, K. Doi, Toshifumi Nagata, Y. Otomo, K. Murakami, K. Matsubara, N. Osato, J. Kawai, Piero Carninci, Y. Hayashizaki, Koji Suzuki, Keiichi Kojima, Y. Takahara, Koji Yamamoto, S. Kikuchi (2003)
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.DNA research : an international journal for rapid publication of reports on genes and genomes, 10 6
Jin Kim, Hye Woo, Jeongsik Kim, P. Lim, I. Lee, Seung Choi, D. Hwang, H. Nam (2009)
Trifurcate Feed-Forward Regulation of Age-Dependent Cell Death Involving miR164 in ArabidopsisScience, 323
S. Balazadeh, S. Parlitz, B. Mueller‐Roeber, R. Meyer (2008)
Natural developmental variations in leaf and plant senescence in Arabidopsis thaliana.Plant biology, 10 Suppl 1
S. Oh, Joon-hyun Park, Gyu Lee, K. Paek, Soon-Ki Park, H. Nam (1997)
Identification of three genetic loci controlling leaf senescence in Arabidopsis thalianaPlant Journal, 12
A. Olsen, H. Ernst, L. Leggio, K. Skriver (2005)
DNA-binding specificity and molecular functions of NAC transcription factorsPlant Science, 169
K. Hinderhofer, U. Zentgraf (2001)
Identification of a transcription factor specifically expressed at the onset of leaf senescencePlanta, 213
R. Dhindsa, P. Plumb-Dhindsa, T. Thorpe (1981)
Leaf Senescence: Correlated with Increased Levels of Membrane Permeability and Lipid Peroxidation, and Decreased Levels of Superoxide Dismutase and CatalaseJournal of Experimental Botany, 32
Sang-Gyu Kim, Chung-Mo Park (2008)
Gibberellic acid-mediated salt signaling in seed germinationPlant Signaling & Behavior, 3
H. Bohnert, D. Nelson, R. Jensen (1995)
Adaptations to Environmental Stresses.The Plant cell, 7
Catherine Smart, S. Hosken, H. Thomas, J. Greaves, Bruce Blair, W. Schuch (1995)
The timing of maize leaf senescence and characterisation of senescence-related cDNAsPhysiologia Plantarum, 93
G. Smyth (2004)
Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray ExperimentsStatistical Applications in Genetics and Molecular Biology, 3
S. Gepstein, Gazalah Sabehi, Marie-Jeanne Carp, T. Hajouj, Mizied Nesher, Inbal Yariv, C. Dor, Michal Bassani (2003)
Large-scale identification of leaf senescence-associated genes.The Plant journal : for cell and molecular biology, 36 5
B. Pant, M. Musialak-Lange, P. Nuc, P. May, A. Buhtz, J. Kehr, Dirk Walther, W. Scheible (2009)
Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing1[C][W][OA]Plant Physiology, 150
Gudrun Plesch, T. Ehrhardt, B. Mueller‐Roeber (2002)
Involvement of TAAAG elements suggests a role for Dof transcription factors in guard cell-specific gene expression.The Plant journal : for cell and molecular biology, 28 4
J. Lin, Shu-Hsing Wu (2004)
Molecular events in senescing Arabidopsis leaves.The Plant journal : for cell and molecular biology, 39 4
F. Becker, Ellen Buschfeld, J. Schell, A. Bachmair (1993)
Altered response to viral infection by tobacco plants perturbed in ubiquitin system.Plant Journal, 3
A. Georges, B. Benayoun, S. Caburet, R. Veitia (2010)
Generic binding sites, generic DNA‐binding domains: where does specific promoter recognition come from?The FASEB Journal, 24
D. Loqué, P. Tillard, A. Gojon, M. Lepetit (2003)
Gene Expression of the NO3– Transporter NRT1.1 and the Nitrate Reductase NIA1 Is Repressed in Arabidopsis Roots by NO2–, the Product of NO3– ReductionPlant Physiology, 132
G.K. Smyth (2004)
Linear models and empirical Bayes for assessing differential expression in microarray experimentsPlant Cell, 3
A. Skirycz, A. Radziejwoski, W. Busch (2008)
DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thalianaPhysiol. Plant., 56
Anders Andersson, J. Keskitalo, A. Sjödin, R. Bhalerao, F. Sterky, K. Wissel, Karolina Tandre, H. Aspeborg, R. Moyle, Y. Ohmiya, R. Bhalerao, A. Brunner, P. Gustafsson, J. Karlsson, J. Lundeberg, O. Nilsson, G. Sandberg, S. Strauss, B. Sundberg, M. Uhlén, S. Jansson, P. Nilsson (2004)
A transcriptional timetable of autumn senescenceGenome Biology, 5
J. Sambrook, E.F. Fritsche, T. Maniatis (2001)
Molecular Cloning: A Laboratory ManualPlant J.
R. Munns (2005)
Genes and salt tolerance: bringing them together.The New phytologist, 167 3
Jianru Zuo, Qinglin Niu, N. Chua (2000)
Technical advance: An estrogen receptor-based transactivator XVE mediates highly inducible gene expression in transgenic plants.The Plant journal : for cell and molecular biology, 24 2
J. Zuo, Q.‐W. Niu, N.‐H. Chua (2000)
An estrogen receptor‐based transactivator XVE mediates highly inducible gene expression in transgenic plants, 24
G.P. Xue (2005)
A CELD‐fusion method for rapid determination of the DNA‐binding sequence specificity of novel plant DNA‐binding proteinsPlant Physiol., 41
M. Kankainen, L. Holm (2004)
POBO, transcription factor binding site verification with bootstrappingNucleic acids research, 32 Web Server issue
Yongfeng Guo, Z. Cai, S. Gan (2004)
Transcriptome of Arabidopsis leaf senescencePlant Cell and Environment, 27
L. Tran, K. Nakashima, Y. Sakuma, S. Simpson, Y. Fujita, K. Maruyama, M. Fujita, M. Seki, K. Shinozaki, K. Yamaguchi-Shinozaki (2004)
Isolation and Functional Analysis of Arabidopsis Stress-Inducible NAC Transcription Factors That Bind to a Drought-Responsive cis-Element in the early responsive to dehydration stress 1 Promoterw⃞The Plant Cell Online, 16
R. Irizarry, Bridget Hobbs, F. Collin, Y. Beazer-Barclay, Kristen Antonellis, U. Scherf, T. Speed (2003)
Exploration, normalization, and summaries of high density oligonucleotide array probe level data.Biostatistics, 4 2
C.M. Smart, S.E. Hosken, H. Thomas, J.A. Greaves, B.G. Blair, W. Schuch (1995)
The timing of maize leaf senescence and characterization of senescence‐related cDNAsStat. App. Gen. Mol. Biol., 93
M. Eisen, P. Spellman, P. Brown, D. Botstein (1998)
Cluster analysis and display of genome-wide expression patterns.Proceedings of the National Academy of Sciences of the United States of America, 95 25
D. Winter, B. Vinegar, H. Nahal, R. Ammar, G.V. Wilson, N.J. Provart (2007)
An “electronic fluorescent pictograph” browser for exploring and analyzing large‐scale biological data setsPlant J., 2
T. Hajouj, R. Michelis, S. Gepstein (2000)
Cloning and characterization of a receptor-like protein kinase gene associated with senescence.Plant physiology, 124 3
B. Pant, A. Buhtz, J. Kehr, W. Scheible (2008)
MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasisThe Plant Journal, 53
M. Holdsworth, L. Bentsink, W. Soppe (2008)
Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination.The New phytologist, 179 1
G. Xue (2005)
A CELD-fusion method for rapid determination of the DNA-binding sequence specificity of novel plant DNA-binding proteins.The Plant journal : for cell and molecular biology, 41 4
Yuehui He, S. Gan (2002)
A Gene Encoding an Acyl Hydrolase Is Involved in Leaf Senescence in Arabidopsis Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010422.The Plant Cell Online, 14
Cai-Zhong Jiang, Steven Rodermel, R. Shibles (1993)
Photosynthesis, Rubisco Activity and Amount, and Their Regulation by Transcription in Senescing Soybean Leaves, 101
R. Gentleman, V. Carey, D. Bates, B. Bolstad, M. Dettling, S. Dudoit, B. Ellis, L. Gautier, Yongchao Ge, Jeff Gentry, K. Hornik, T. Hothorn, W. Huber, S. Iacus, R. Irizarry, F. Leisch, Cheng Li, M. Maechler, A. Rossini, G. Sawitzki, Colin Smith, Gordon Smyth, L. Tierney, J. Yang, Jianhua Zhang (2004)
Bioconductor: open software development for computational biology and bioinformaticsGenome Biology, 5
L. Weaver, S. Gan, B. Quirino, R. Amasino (1998)
A comparison of the expression patterns of several senescence-associated genes in response to stress and hormone treatmentPlant Molecular Biology, 37
A. Skirycz, M. Reichelt, Meike Burow, C. Birkemeyer, J. Rolcik, J. Kopka, M. Zanor, J. Gershenzon, M. Strnad, J. Szopa, B. Mueller‐Roeber, I. Witt (2006)
DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis.The Plant journal : for cell and molecular biology, 47 1
K. Lohman, S. Gan, M. John, R. Amasino (1994)
Molecular analysis of natural leaf senescence in Arabidopsis thalianaPhysiologia Plantarum, 92
B. Quirino, Yoo-Sun Noh, E. Himelblau, R. Amasino (2000)
Molecular aspects of leaf senescence.Trends in plant science, 5 7
B. Usadel, A. Nagel, D. Steinhauser, Y. Gibon, O. Bläsing, Henning Redestig, N. Sreenivasulu, L. Krall, M. Hannah, F. Poree, A. Fernie, M. Stitt (2006)
PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experimentsBMC Bioinformatics, 7
Y. Noh, R. Amasino (1999)
Identification of a promoter region responsible for the senescence-specific expression of SAG12Plant Molecular Biology, 41
V. Buchanan-Wollaston, T. Page, E. Harrison, E. Breeze, P. Lim, H. Nam, J. Lin, Shu-Hsing Wu, J. Swidzinski, K. Ishizaki, C. Leaver (2005)
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.The Plant journal : for cell and molecular biology, 42 4
S. Balazadeh, D. Riaño-Pachón, B. Mueller‐Roeber (2008)
Transcription factors regulating leaf senescence in Arabidopsis thaliana.Plant biology, 10 Suppl 1
S. Dwivedi, M. Kar, D. Mishra (1979)
Biochemical Changes in Excised Leaves of Oryza sativa Subjected to Water StressPhysiologia Plantarum, 45
Y. Benjamini, Y. Hochberg (1995)
Controlling the false discovery rate: a practical and powerful approach to multiple testingJournal of the royal statistical society series b-methodological, 57
E. Graaff, R. Schwacke, A. Schneider, M. Desimone, U. Flügge, R. Kunze (2006)
Transcription Analysis of Arabidopsis Membrane Transporters and Hormone Pathways during Developmental and Induced Leaf Senescence1[W]Plant Physiology, 141
S. Lutts, J. Kinet, J. Bouharmont (1996)
NaCl-induced senescence in leaves of rice (Oryza sativa L) cultivars differing in salinity resistanceAnnals of Botany, 78
Debbie Winter, Ben Vinegar, Hardeep Nahal, R. Ammar, Greg Wilson, N. Provart (2007)
An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data SetsPLoS ONE, 2
Xin‐Jian He, R. Mu, W. Cao, Zhigang Zhang, Jin‐Song Zhang, S. Chen (2005)
AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development.The Plant journal : for cell and molecular biology, 44 6
E. Van der Graaff, R. Schwacke, A. Schneider, M. Desimone, U.I. Flugge, R. Kunze (2006)
Transcription analysis of Arabidopsis membrane transporters and hormone pathways during developmental and induced leaf senescencePlant Mol. Biol., 141
S. Hörtensteiner, U. Feller (2002)
Nitrogen metabolism and remobilization during senescence.Journal of experimental botany, 53 370
Philip Zimmermann, Matthias Hirsch-Hoffmann, L. Hennig, W. Gruissem (2004)
GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox1[w]Plant Physiology, 136
The onset and progression of senescence are under genetic and environmental control. The Arabidopsis thaliana NAC transcription factor ANAC092 (also called AtNAC2 and ORE1) has recently been shown to control age‐dependent senescence, but its mode of action has not been analysed yet. To explore the regulatory network administered by ANAC092 we performed microarray‐based expression profiling using estradiol‐inducible ANAC092 overexpression lines. Approximately 46% of the 170 genes up‐regulated upon ANAC092 induction are known senescence‐associated genes, suggesting that the NAC factor exerts its role in senescence through a regulatory network that includes many of the genes previously reported to be senescence regulated. We selected 39 candidate genes and confirmed their time‐dependent response to enhanced ANAC092 expression by quantitative RT‐PCR. We also found that the majority of them (24 genes) are up‐regulated by salt stress, a major promoter of plant senescence, in a manner similar to that of ANAC092, which itself is salt responsive. Furthermore, 24 genes like ANAC092 turned out to be stage‐dependently expressed during seed growth with low expression at early and elevated expression at late stages of seed development. Disruption of ANAC092 increased the rate of seed germination under saline conditions, whereas the opposite occurred in respective overexpression plants. We also detected a delay of salinity‐induced chlorophyll loss in detached anac092‐1 mutant leaves. Promoter–reporter (GUS) studies revealed transcriptional control of ANAC092 expression during leaf and flower ageing and in response to salt stress. We conclude that ANAC092 exerts its functions during senescence and seed germination through partly overlapping target gene sets.
The Plant Journal – Wiley
Published: Apr 1, 2010
Keywords: ; ; ; ;
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