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(2011)
Soft Matter 7
P. Prevelige, Dennis Thomas, J. King (1993)
Nucleation and growth phases in the polymerization of coat and scaffolding subunits into icosahedral procapsid shells.Biophysical journal, 64 3
M. Rottereau, J. Gimel, T. Nicolai, D. Durand (2005)
Influence of the Brownian step size in off-lattice Monte Carlo simulations of irreversible particle aggregationThe European Physical Journal E, 18
Harold Hatch, J. Mittal, V. Shen (2015)
Computational study of trimer self-assembly and fluid phase behavior.The Journal of chemical physics, 142 16
T. Kihara (1953)
Virial Coefficients and Models of Molecules in GasesReviews of Modern Physics, 25
(2012)
Nature 491
J. Wolters, Guido Avvisati, F. Hagemans, T. Vissers, Daniela Kraft, M. Dijkstra, W. Kegel (2014)
Self-assembly of "Mickey Mouse" shaped colloids into tube-like structures: experiments and simulations.Soft matter, 11 6
(2017)
Nanoscale 9
Zakiya Shireen, S. Babu (2017)
Lattice animals in diffusion limited binary colloidal system.The Journal of chemical physics, 147 5
M. Kastelic, Y. Kalyuzhnyi, B. Hribar-Lee, K. Dill, V. Vlachy (2015)
Protein aggregation in salt solutionsProceedings of the National Academy of Sciences, 112
Emanuela Bianchi, R. Blaak, C. Likos (2011)
Patchy colloids: state of the art and perspectives.Physical chemistry chemical physics : PCCP, 13 14
Hongjun Liu, Sanat Kumar, F. Sciortino (2007)
Vapor-liquid coexistence of patchy models: relevance to protein phase behavior.The Journal of chemical physics, 127 8
(2003)
Mater
M. Mateu (2013)
Assembly, stability and dynamics of virus capsids.Archives of biochemistry and biophysics, 531 1-2
A. Prabhu, S. Babu, J. Dolado, J. Gimel (2014)
Brownian cluster dynamics with short range patchy interactions: its application to polymers and step-growth polymerization.The Journal of chemical physics, 141 2
F. Chiti, C. Dobson (2006)
Protein misfolding, functional amyloid, and human disease.Annual review of biochemistry, 75
(2004)
Nature 428
Y. Kalyuzhnyi, Emanuela Bianchi, Silvano Ferrari, G. Kahl (2014)
Theoretical and numerical investigations of inverse patchy colloids in the fluid phase.The Journal of chemical physics, 142 11
G. Whitesides, B. Grzybowski (2002)
Self-Assembly at All ScalesScience, 295
Qian Chen, J. Whitmer, Shan Jiang, S. Bae, Erik Luijten, S. Granick (2011)
Supracolloidal Reaction Kinetics of Janus SpheresScience, 331
S. Babu, J. Gimel, T. Nicolai (2008)
Diffusion limited cluster aggregation with irreversible slippery bondsThe European Physical Journal E, 27
Zhenli Zhang, A. Keys, Ting Chen, S. Glotzer (2005)
Self-assembly of patchy particles into diamond structures through molecular mimicry.Langmuir : the ACS journal of surfaces and colloids, 21 25
I. Coluzza, P. Oostrum, Barbara Capone, E. Reimhult, C. Dellago (2013)
Design and folding of colloidal patchy polymersSoft Matter, 9
J. Bancroft, G. Hills, R. Markham (1967)
A study of the self-assembly process in a small spherical virus. Formation of organized structures from protein subunits in vitro.Virology, 31 2
(1953)
Rev Mod Phys 25
(2014)
PloS One 9
P. Benetatos, E. Terentjev, A. Zippelius (2013)
Bundling in brushes of directed and semiflexible polymers.Physical review. E, Statistical, nonlinear, and soft matter physics, 88 4
(2006)
The Eur
Sujin Babu, M. Rottereau, T. Nicolai, J. Gimel, Dominique Durand (2006)
Flocculation and percolation in reversible cluster-cluster aggregationThe European Physical Journal E, 19
(2007)
Proc
F. Sciortino, Emanuela Bianchi, J. Douglas, P. Tartaglia (2007)
Self-assembly of patchy particles into polymer chains: a parameter-free comparison between Wertheim theory and Monte Carlo simulation.The Journal of chemical physics, 126 19
M. Grätzel (2001)
Photoelectrochemical cellsNature, 414
Silvano Ferrari, Emanuela Bianchi, G. Kahl (2016)
Spontaneous assembly of a hybrid crystal-liquid phase in inverse patchy colloid systems† †Electronic supplementary information (ESI) available. See DOI: 10.1039/C6NR07987C Click here for additional data file. Click here for additional data file.Nanoscale, 9
J. Halverson, A. Tkachenko (2013)
DNA-programmed mesoscopic architecture.Physical review. E, Statistical, nonlinear, and soft matter physics, 87 6
S. Babu, J. Gimel, T. Nicolai, C. Michele (2007)
The influence of bond rigidity and cluster diffusion on the self-diffusion of hard spheres with square well interaction.The Journal of chemical physics, 128 20
Emanuela Bianchi, J. Largo, P. Tartaglia, E. Zaccarelli, F. Sciortino (2006)
Phase diagram of patchy colloids: towards empty liquids.Physical review letters, 97 16
N. Dorsaz, G. Thurston, A. Stradner, P. Schurtenberger, G. Foffi (2011)
Phase separation in binary eye lens protein mixturesSoft Matter, 7
D. Salunke, D. Caspar, R. Garcea (1989)
Polymorphism in the assembly of polyomavirus capsid protein VP1.Biophysical journal, 56 5
(2016)
Science 351
(2011)
Science 331
G. Foffi, F. Sciortino (2007)
On the possibility of extending the Noro-Frenkel generalized law of correspondent states to nonisotropic patchy interactions.The journal of physical chemistry. B, 111 33
B. Rombaut, R. Vrijsen, A. Boeyé (1990)
New evidence for the precursor role of 14 S subunits in poliovirus morphogenesis.Virology, 177 1
S. Babu, J. Gimel, T. Nicolai (2006)
Phase separation and percolation of reversibly aggregating spheres with a square-well attraction potential.The Journal of chemical physics, 125 18
(2014)
Soft Matter 10
Silvano Ferrari, Emanuela Bianchi, Y. Kalyuzhnyi, G. Kahl (2014)
Inverse patchy colloids with small patches: fluid structure and dynamical slowing downJournal of Physics: Condensed Matter, 27
Zdeněk Preisler, T. Vissers, F. Smallenburg, G. Munaò, F. Sciortino (2013)
Phase diagram of one-patch colloids forming tubes and lamellae.The journal of physical chemistry. B, 117 32
Debra Audus, F. Starr, J. Douglas (2016)
Coupling of isotropic and directional interactions and its effect on phase separation and self-assembly.The Journal of chemical physics, 144 7
(2015)
Natl
N. Kern, D. Frenkel (2003)
Fluid-fluid coexistence in colloidal systems with short-ranged strongly directional attractionJournal of Chemical Physics, 118
(2013)
Soft Matter 9
G. Munaò, Zdeněk Preisler, T. Vissers, F. Smallenburg, F. Sciortino (2013)
Cluster formation in one-patch colloids: low coverage resultsSoft Matter, 9
(1993)
Biophys
S. Babu, J. Gimel, T. Nicolai (2009)
Crystallization and dynamical arrest of attractive hard spheres.The Journal of chemical physics, 130 6
Zdeněk Preisler, T. Vissers, G. Munaò, F. Smallenburg, F. Sciortino (2014)
Equilibrium phases of one-patch colloids with short-range attractions.Soft matter, 10 28
N. Valadez-Pérez, A. Benavides, E. Schöll-Paschinger, R. Castañeda-Priego (2012)
Phase behavior of colloids and proteins in aqueous suspensions: theory and computer simulations.The Journal of chemical physics, 137 8
(2002)
Science 295
Emanuela Bianchi, P. Tartaglia, E. Zaccarelli, F. Sciortino (2008)
Theoretical and numerical study of the phase diagram of patchy colloids: ordered and disordered patch arrangements.The Journal of chemical physics, 128 14
C.M Liddell, C.J Summers, A.M Gokhale (2003)
Stereological estimation of the morphology distribution of ZnS clusters for photonic crystal applicationsMaterials Characterization, 50
Wenyan Liu, M. Tagawa, H. Xin, Tong-Biao Wang, H. Emamy, Huilin Li, K. Yager, F. Starr, A. Tkachenko, O. Gang (2016)
Diamond family of nanoparticle superlatticesScience, 351
S. Glotzer, M. Solomon (2007)
Anisotropy of building blocks and their assembly into complex structures.Nature materials, 6 8
E. Noya, Emanuela Bianchi (2015)
Phase behaviour of inverse patchy colloids: effect of the model parametersJournal of Physics: Condensed Matter, 27
(2001)
Nature 414
J. Dudowicz, K. Freed, J. Douglas (2003)
Lattice model of equilibrium polymerization. IV. Influence of activation, chemical initiation, chain scission and fusion, and chain stiffness on polymerization and phase separationJournal of Chemical Physics, 119
J. Champion, Y. Katare, S. Mitragotri (2007)
Making polymeric micro- and nanoparticles of complex shapesProceedings of the National Academy of Sciences, 104
(1990)
Virology 177
(2006)
Annu
J. Tavares, L. Rovigatti, F. Sciortino (2012)
Quantitative description of the self-assembly of patchy particles into chains and rings.The Journal of chemical physics, 137 4
K. Rah, K. Freed, J. Dudowicz, J. Douglas (2006)
Lattice model of equilibrium polymerization. V. Scattering properties and the width of the critical regime for phase separation.The Journal of chemical physics, 124 14
T. Vissers, F. Smallenburg, G. Munaò, Zdeněk Preisler, F. Sciortino (2014)
Cooperative polymerization of one-patch colloids.The Journal of chemical physics, 140 14
(2015)
Nanoscale 9, 1956–1963(2017)
Yufeng Wang, Yu Wang, Dana Breed, V. Manoharan, Lang Feng, A. Hollingsworth, M. Weck, D. Pine (2012)
Colloids with valence and specific directional bondingNature, 491
M. Wertheim (1987)
Thermodynamic perturbation theory of polymerizationJournal of Chemical Physics, 87
(2013)
Phys
E. Noya, Ismene Kolovos, Günther Doppelbauer, G. Kahl, Emanuela Bianchi (2014)
Phase diagram of inverse patchy colloids assembling into an equilibrium laminar phase.Soft matter, 10 42
R. Langer, D. Tirrell (2004)
Designing materials for biology and medicineNature, 428
B. Huisman, P. Bolhuis, A. Fasolino (2008)
UvA-DARE ( Digital Academic Repository ) Phase transition to bundles of flexible supramolecular polymers
(2012)
) . ( 15 ) M . Gratzel
(2005)
Langmuir 21
Lang Feng, R. Dreyfus, R. Sha, N. Seeman, P. Chaikin (2013)
DNA Patchy ParticlesAdvanced Materials, 25
(1967)
Virology 31
L. Michele, E. Eiser (2013)
Developments in understanding and controlling self assembly of DNA-functionalized colloids.Physical chemistry chemical physics : PCCP, 15 9
D. Woodard, D. Bell, D. Tipton, S. Durrance, Lisa Cole, Bin Li, Shaohua Xu (2014)
Gel Formation in Protein Amyloid Aggregation: A Physical Mechanism for CytotoxicityPLoS ONE, 9
J. Dudowicz, J. Douglas, K. Freed (2009)
An exactly solvable model of hierarchical self-assembly.The Journal of chemical physics, 130 22
AbstractIn the present study we are performing simulation of simple model of two patch colloidal particles undergoing irreversible diffusion limited cluster aggregation using patchy Brownian cluster dynamics. In addition to the irreversible aggregation of patches, the spheres are coupled with isotropic reversible aggregation through the Kern–Frenkel potential. Due to the presence of anisotropic and isotropic potential we have also defined three different kinds of clusters formed due to anisotropic potential and isotropic potential only as well as both the potentials together. We have investigated the effect of patch size on self-assembly under different solvent qualities for various volume fractions. We will show that at low volume fractions during aggregation process, we end up in a chain conformation for smaller patch size while in a globular conformation for bigger patch size. We also observed a chain to bundle transformation depending on the attractive interaction strength between the chains or in other words depending on the quality of the solvent. We will also show that bundling process is very similar to nucleation and growth phenomena observed in colloidal system with short range attraction. We have also studied the bond angle distribution for this system, where for small patches only two angles are more probable indicating chain formation, while for bundling at very low volume fraction a tail is developed in the distribution. While for the case of higher patch angle this distribution is broad compared to the case of low patch angles showing we have a more globular conformation. We are also proposing a model for the formation of bundles which are similar to amyloid fibers using two patch colloidal particles.
Pure and Applied Chemistry – de Gruyter
Published: Jun 27, 2018
Keywords: aggregation; amyloid fibers; irreversible; patchy; POLYCHAR-25; reversible
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