TY - JOUR AU1 - Lines, S AU2 - Manners, J AU3 - Mayne, N J AU4 - Goyal, J AU5 - Carter, A L AU6 - Boutle, I A AU7 - Lee, G K H AU8 - Helling, Ch AU9 - Drummond, B AU1 - Acreman, D M AB - ABSTRACT We present high-resolution transmission spectra, calculated directly from a 3D radiative hydrodynamic simulation that includes kinetic cloud formation, for HD 209458b. We find that the high opacity of our vertically extensive cloud deck, composed of a large number density of sub-$$\mu$$m particles, flattens the transmission spectrum and obscures spectral features identified in the observed data. We use the pandexo simulator to explore features of our HD 209458b spectrum which may be detectable with the James Webb Space Telescope. We determine that an   8–12$$\mu$$m absorption feature attributed to the mixed-composition, predominantly silicate cloud particles is a viable marker for the presence of cloud. Further calculations explore, and trends are identified with, variations in cloud opacity, composition heterogeneity, and artificially scaled gravitational settling on the transmission spectrum. Principally, by varying the upper extent of our cloud decks, rainout is identified to be a key process for the dynamical atmospheres of hot Jupiters and shown to dramatically alter the resulting spectrum. Our synthetic transmission spectra, obtained from the most complete, forward atmosphere simulations to date, allow us to explore the model’s ability to conform with observations. Such comparisons can provide insight into the physical processes either missing or requiring improvement. hydrodynamics, radiative transfer, scattering, methods: numerical, planets and satellites: atmospheres 1 INTRODUCTION Clouds are expected to be ubiquitous in exoplanetary atmospheres (Marley et al. 2013). Transmission spectra obtained observationally from hot Jupiters, highly irradiated Jovian-like giant exoplanets, often contain a number of gas-phase atomic and molecular absorption features (e.g. Charbonneau et al. 2002; Snellen et al. 2010; Sing et al. 2011; Birkby et al. 2017), possible small-particle condensates or photochemical ‘haze’ that appears in spectra as non-H2/He Rayleigh scattering (e.g. Lecavelier Des Etangs et al. 2008; Pont et al. 2008; Nikolov et al. 2015; Kirk et al. 2017) and evidence of clouds in the form of a large multiwavelength opacity that can weaken water and other gaseous signatures (Deming et al. 2013; Iyer et al. 2016; Sing et al. 2016). The ability of clouds and haze to mute or mask entirely the underlying chemical composition and thermal structure of their host atmospheres means an improved understanding of their atmospheric feedback may be critical in correctly interpreting observations. Since cloud formation is dependent upon the local thermochemical conditions, mapping clouds is important to infer the underlying atmospheric properties. The distribution of clouds across a diverse range of planetary types is made more complex by the flow or advection, particularly from superrotating equatorial or general zonal jets (see e.g. Showman & Guillot 2002; Y.-K. Cho et al. 2006; Menou & Rauscher 2009; Heng, Menou & Phillipps 2011; Showman & Polvani 2011; Dobbs-Dixon & Agol 2013; Mayne et al. 2014b; Rauscher & Kempton 2014; Carone, Keppens & Decin 2015; Heng & Showman 2015; Carone, Keppens & Decin 2016; Kataria et al. 2016; Mayne et al. 2017), meridional advection (from jet-momentum coupling; see Showman & Polvani 2011; Mayne et al. 2014a, 2017; Lines et al. 2018), and vertical mixing from a combination of mean flow (circulation) and atmospheric turbulence (Parmentier, Showman & Lian 2013). The swift increase in our knowledge of the dynamics and structure of hot-Jupiter atmospheres has been due to, in part, the development and adaptation of 3D atmosphere and global circulation models (GCMs), which can capture both the full vertical and horizontal dynamics (e.g. Showman & Guillot 2002; Menou & Rauscher 2009; Rauscher & Menou 2013; Mayne et al. 2014b). Since the atmospheres of hot Jupiters are heated by both a convective flux at the base of the radiative zone and intense stellar irradiation, one important model consideration is the treatment of radiative transfer. Cloud-free simulations have produced results that closely match observations, for example the prediction of kilometre per second wind velocities from the superrotating jets (Snellen et al. 2010; Louden & Wheatley 2015; Brogi et al. 2016), and the agreement with the observed dayside emission (Showman et al. 2009; Amundsen et al. 2016). Aerosols are prevalent in the atmospheres of planets within our Solar System, and the influence on their host atmospheres (e.g. Zhang, Strobel & Imanaka 2017) demonstrates clearly that neglecting the radiative feedback from clouds on their host atmospheres is not always a suitable approximation. In the last few years, a number of cloudy GCMs, of varying complexity, have been developed (Parmentier et al. 2013; Lee et al. 2016; Oreshenko, Heng & Demory 2016; Parmentier et al. 2016; Roman & Rauscher 2018) and advanced our understanding of cloud dynamics, radiative feedback, and their effect on observables. Recently, in Lines et al. (2018), we continued this effort by coupling the Met Office GCM, the unified model (um), to a sophisticated kinetic, non-equilibrium cloud formation model (Woitke & Helling 2003, 2004; Helling & Woitke 2006; Helling, Woitke & Thi 2008a; Lee et al. 2016). The coupled cloud–GCM model considers the homogeneous nucleation of seed particles and subsequent heterogeneous surface growth (condensation) and evaporation. The model also allows for the advection of cloud and depleted/enriched gas with the bulk atmospheric flow, gravitational settling (precipitation), and both gas- and solid-phase interaction with planetary and stellar radiation via absorption and scattering. While theoretical modelling provides a valuable opportunity to understand atmospheric chemical processes that are not directly observable in the atmospheres of extrasolar planets, in order to verify their accuracy, comparisons to observed data sets are necessary. With respect to observations of cloud in substellar atmospheres, a combination of powerful methods has been used, including analysis of emission spectra (Knutson et al. 2009; Line et al. 2016; Evans et al. 2017) and phase curves (Demory et al. 2013; Armstrong et al. 2016; Stevenson et al. 2014, 2017). Transmission spectra, however, remain one of the most valuable sources of atmospheric data, allowing for the direct identification of gas-phase species via their interaction with the stellar photons. This claim is supported by the wealth of transmission spectra obtained from forward models of hot-Jupiter atmospheres (e.g. Seager & Sasselov 2000; Brown 2001; Dobbs-Dixon, Agol & Burrows 2012; Showman et al. 2013; Wakeford & Sing 2015; Goyal et al. 2018). With hot Jupiters expected to contain similar chemical species, albeit in variable quantities due to their vast thermal range, the detection or absence of signatures of key species, such as the alkali metals and water vapour, can help us to infer the presence of haze and/or condensate clouds. One of the foremost issues with atmosphere characterization, however, is the continued absence of directly detected clouds; haze and clouds are currently indirectly inferred from non-H2/He Rayleigh scattering and weakened spectral signatures from their expected broad opacity. Many studies have discussed potential condensate species operating across the James Webb Space Telescope (JWST) wavelength window (e.g. Helling et al. 2006; Helling et al. 2008a; Min et al. 2008; Zeidler, Posch & Mutschke 2013; Lee et al. 2014; Marley & Robinson 2015; Wakeford & Sing 2015; Zeidler, Mutschke & Posch 2015; Helling et al. 2016; Kitzmann & Heng 2018). Of particular interest for mineral dust clouds forming in hot Jupiters is the Si–O bond which has active vibrational modes operating between λ ∼ 8 and 12$$\mu$$m (Lee et al. 2014; Wakeford & Sing 2015). Plotting the complex refractive index (see Fig. A1) for our included dust species displays, via the extinction coefficient, the strong attenuating properties of the silicate species in the 10 $$\mu$$m region can be seen. Cloud-coupled GCMs can indicate the expected 3D distribution of cloud precipitation efficiency and help constrain which condensate species are important for a given planet. Comparisons with observational data can only be made by producing synthetic model observables. Hubbard et al. (2001), Seager & Sasselov (2000), and Brown (2001) presented some of the first studies into how model transmission spectra can be used as diagnostics to characterize giant exoplanet atmospheres. Atmospheric properties, such as the temperature and cloud cover, were investigated to reveal their impact on the resulting spectrum. While most transmission models have been analytically prescribed for 1D pressure–temperature (PT) profiles, Fortney et al. (2003) presented a 2D study and furthered this in Fortney et al. (2010) for application to a 3D atmosphere. Since then, various models have considered the effect of a 3D atmosphere on the transmission spectrum (Burrows et al. 2010; Dobbs-Dixon et al. 2012; Miller-Ricci Kempton & Rauscher 2012; Showman et al. 2013; Kilpatrick et al. 2018; Drummond et al. 2018; Parmentier et al. 2018; Powell et al. 2018). In this letter, we present for the first time synthetic transmission spectra of a cloudy hot-Jupiter atmosphere that are computed directly from a state-of-the-art prognostic (predictive) and radiatively active cloudy 3D simulation. This methodology is applied to the existing radiatively active HD 209458b cloudy atmosphere simulation performed in Lines et al. (2018) and we explore within this atmosphere how cloud particle opacity, composition, and gravitational settling affect the transmitted flux. In Section 2, we introduce the details of our transmission spectrum calculation, initial conditions, and methodology. In Section 3, we present the transmission spectra and potential for cloud detection with the JWST, and in Section 4 we discuss and summarize the implications from our findings. 2 NUMERICAL METHODS 2.1 Radiative transfer For the calculation of radiative heating rates, we use the open-source ‘Suite Of Community RAdiative Transfer codes based on Edwards & Slingo (1996)’ (socrates1) two-stream solver, in the configuration described in Amundsen et al. (2014). Rayleigh scattering for our H2/He atmosphere is included, and a combination of Mie and effective medium theory is invoked to compute the scattering and extinction contribution from the cloud condensate particles (see Lines et al. 2018 for more information). Scattering of both stellar and thermal fluxes is done using the practical improved flux method of Zdunkowski, Welch & Korb (1980). The correlated-k method is used for gas absorption with absorption line data for H2O, CO, CH4, NH3, Li, Na, K, Rb, Cs, and H2–H2 and H2–He collision induced absorption (CIA) data taken from exomol, and where necessary, hitran and hitemp. The complete index of line list and partition function sources can be found in Amundsen et al. (2014). The method of equivalent extinction (see Edwards 1996; Amundsen et al. 2017) is used for the treatment of overlapping gas-phase absorption. 2.2 Transmission spectrum calculation Our transmission spectra are calculated within the 3D model framework using the same radiation scheme that is used to solve for the heating rates (i.e. socrates). This can be done at any time during the simulation, by way of a second, diagnostic (not affecting model evolution), call to the scheme using a configuration with high spectral resolution. For this diagnostic call, we treat the direct (unscattered) stellar radiation using spherical geometry and implement the following methodology, which follows that of Brown (2001). The diagnosed transmission spectrum takes into consideration the slant geometry and extinction of stellar flux through the 3D atmosphere and is made up of contributions from the direct fluxes leaving the top of the atmosphere for each GCM grid-column on the nightside of the limb. Fig. 1 displays the geometry considered. An important limitation of this method is that each vertical column is treated independently within the GCM so that individual transmission spectra are derived for spherically symmetric atmospheres. For the example column displayed in Fig. 1 (right), the path of the direct beam in Fig. 1 (left) passes through model layers assuming identical optical properties to the given column, as if they were homogenous spherical shells. This calculation will then be done separately for each of the columns so that the resulting fluxes will fully represent variations across the limb perpendicular to the observer, while variations along the line of sight are only approximately represented. Figure 1. View largeDownload slide Spherical shell geometry used for the calculation of transmission spectra. The left-hand plot shows the view perpendicular to the transit. The right-hand plot shows the view from the nightside in line with the transit. Parameters are shown for a model column located in the position of the dotted line in each plot, giving a transmission spectrum at the point where the arrow leaves the top of the atmosphere (indicated by the dot in the right-hand plot). ζ denotes the stellar zenith angle, b the impact parameter, and ds the path length element for the layer bounded by radii r1 and r2. Note the path of the beam will pass through each layer twice, except for the layer in which the impact parameter is found. Figure 1. View largeDownload slide Spherical shell geometry used for the calculation of transmission spectra. The left-hand plot shows the view perpendicular to the transit. The right-hand plot shows the view from the nightside in line with the transit. Parameters are shown for a model column located in the position of the dotted line in each plot, giving a transmission spectrum at the point where the arrow leaves the top of the atmosphere (indicated by the dot in the right-hand plot). ζ denotes the stellar zenith angle, b the impact parameter, and ds the path length element for the layer bounded by radii r1 and r2. Note the path of the beam will pass through each layer twice, except for the layer in which the impact parameter is found. Calculations are performed for model columns where the stellar zenith angle, ζ, is greater than 90 degrees (i.e. lit from beneath) and where the path of the stellar beam will not intersect the bottom boundary of the model, below which the atmosphere is considered opaque. The element of the slant path within each layer, or spherical shell, i is \begin{eqnarray*} \mathrm{ d}s_i &=& 2 \left(\sqrt{r_i^2 - b^2} - \sqrt{r_{i+1}^2 - b^2} \right)\quad [r_{i+1} \gt b], \end{eqnarray*} (1) \begin{eqnarray*} \mathrm{ d}s_i &=& 2\sqrt{r_i^2 - b^2} \qquad [r_i \gt b, r_{i+1} \lt b], \end{eqnarray*} (2) \begin{eqnarray*} \mathrm{ d}s_i &=& 0 \qquad [r_i \lt b]. \end{eqnarray*} (3) The total optical depth along the slant path for a given frequency ν is then \begin{eqnarray*} \tau (\nu)=\sum _{i=1}^{n} \mathrm{ d}s_i \kappa _i(\nu) \rho _i, \end{eqnarray*} (4) where the sum is over the number of model layers (n), κi is the extinction coefficient for layer i, and ρi is the mean density in the layer. The calculation is done in terms of flux in Watts per square metre normal to the direction of the incoming beam. The incident flux into the atmosphere Finc is determined based on the stellar constant (S, the stellar flux at 1 au) and the orbital distance of the planet (Dau, in astronomical units). The outgoing flux is a simple function of the optical depth along the slant path: \begin{eqnarray*} F_{\rm inc}(\nu) &=& S(\nu) / D_{\rm au}^2, \end{eqnarray*} (5) \begin{eqnarray*} F_{\rm out}(\nu) &=& F_{\rm inc}(\nu) e^{-\tau (\nu)}. \end{eqnarray*} (6) The spectral flux, Fout, here calculated as that passing through an area normal to the direction of the outgoing beam, is then converted to spectral intensity, Iout, along the beam direction by assuming the flux is spread over a solid angle equal to that subtended by the stellar disc as seen from the planet. This can then be used to obtain the flux seen by a distant observer of the transit, which we normalize to units of Watts per square metre at 1 au: \begin{eqnarray*} I_{\rm out}(\nu) &=& \frac{F_{\rm out}(\nu) D^2}{\pi R_*^2}, \end{eqnarray*} (7) \begin{eqnarray*} F_{1\mathrm{ au}}(\nu) &=& \frac{I_{\rm out}(\nu) |\mathrm{ d}A {\rm cos{\zeta }}|}{\rm au^2}, \end{eqnarray*} (8) \begin{eqnarray*} \qquad \quad &=& \frac{F_{\rm out}(\nu) |\mathrm{ d}A {\rm cos{\zeta }}| D_{\mathrm{ au}}^2}{\pi R_*^2}, \end{eqnarray*} (9) where |dAcosζ| is the area of the model gridbox at the top of the atmosphere projected in the direction of the beam, au is an astronomical unit in metres, D is the orbital distance in metres, and R* is the stellar radius in metres. The fluxes from each contributing model column are summed to give the total flux transmitted through the planet’s limb that would be received by a distant observer. We then convert this to an effective planetary radius, Rp(ν), by determining the radius of a completely opaque planet that would obscure the same amount of stellar flux. The stellar flux (normalized for an observer at a distance of 1 au) that would be received during a transit (ST) if the planet’s atmosphere was totally opaque is \begin{eqnarray*} S_\mathrm{ T}(\nu)=S(\nu)\left(1 - \frac{R_{\mathrm{ p},\mathrm{ TOA}}^2}{R_*^2}\right) . \end{eqnarray*} (10) The actual flux observed during the transit is \begin{eqnarray*} S_\mathrm{ T}(\nu) &=& S(\nu)\left(1 - \frac{R_{\mathrm{ p},\mathrm{ TOA}}^2}{R_*^2}\right) + \sum _{x,y}{F_{1\rm au}(\nu)} \end{eqnarray*} (11) \begin{eqnarray*} \qquad \quad &=& S(\nu)\left(1 - \frac{R_\mathrm{ p}(\nu)^2}{R_*^2}\right) . \end{eqnarray*} (12) Then the effective planetary radius for this frequency as a fraction of the stellar radius can be found: \begin{eqnarray*} \frac{R_\mathrm{ p}(\nu)}{R_*}=\sqrt{\frac{R_{\mathrm{ p},\mathrm{ TOA}}^2}{R_*^2} - \frac{\sum _{x,y}{F_{1\rm au}(\nu)}}{S(\nu)}}. \end{eqnarray*} (13) The method employed here is somewhat different from that used by Fortney et al. (2010), who define a transit radius at the point where the total slant optical depth reaches 0.56. The flux-based method used here, as noted by Brown (2001), derives directly from how the quantity is actually observed. The other major difference with the method of Fortney et al. (2010) is how the spherical grid is defined. Fortney et al. (2010) resample the output of their 3D simulations on to a grid with its pole directed towards the star. The transmission spectra for each azimuthal angle around the limb can then be calculated using the optical properties sampled along the slant path. In contrast, we calculate the transmission spectra directly from the GCM as it is running using the latitude–longitude grid of the GCM without interpolation of optical properties. The advantage of this method is that transmission spectra can be diagnosed directly from the model using the full 3D information available to the radiation scheme. The treatment of each column separately within the scheme means that only the atmospheric conditions in the columns on the nightside of the planet limb will be included in the calculation. This may cause biases if the optical properties of the atmosphere display strong gradients across the terminator. We address the bias introduced by our approximation in the results. 2.3 Initial conditions We apply our transmission model to the final output from our ‘hot-interior’,2 radiatively active cloudy simulation of HD 209458b in Lines et al. (2018). In that work, we evolved from rest, using the um, a cloud-free atmosphere of HD 209458b for t = 800 d,3 followed by tcloud= 100 d of cloud formation and evolution (of which, in the final 50 d, the clouds are allowed to radiatively feedback, via absorption and scattering, on to the atmosphere). The kinetic, microphysical Helling & Woitke (2006) model is used to compute TiO2 seed particle nucleation and the growth and evaporation of cloud particles, of which a single particle can be a mixture of our included condensation species (TiO2, SiO, SiO2, MgSiO3, and Mg2SiO4). Cloud particles are advected and precipitated through the atmosphere, in addition to contributing to the local heating rates via the scattering and absorption of thermal and stellar irradiation. The subgrid particle size distribution is unimodal, meaning that each cell reports a mean cloud particle size that varies between cells. The grid setup and planet constants can be found in Table 1 and a brief overview of the cloud distribution and radiative properties is displayed in Fig. 2. Figure 2. View largeDownload slide Cloud particle number density (upper), aerosol total optical depth for λ = 6.45–10.40 $$\mu$$m (middle), and aerosol total optical depth for λ = 0.96–1.01$$\mu$$m (lower) in HD 209458b. Data obtained from the ‘hot’ simulation at tcloud = 100 d in Lines et al. (2018). The substellar point is at λ = 180o. Figure 2. View largeDownload slide Cloud particle number density (upper), aerosol total optical depth for λ = 6.45–10.40 $$\mu$$m (middle), and aerosol total optical depth for λ = 0.96–1.01$$\mu$$m (lower) in HD 209458b. Data obtained from the ‘hot’ simulation at tcloud = 100 d in Lines et al. (2018). The substellar point is at λ = 180o. Table 1. Selected model parameters from our hot-interior HD 209458b atmosphere, covering grid setup, run lengths, and planet constants. See Lines et al. (2018) for more information. Parameter Value Horizontal resolution (grid cells) λ = 144, ϕ = 90 Vertical resolution (levels) 66 Hydrodynamical time-step (s) 30 Radiative time-step (s) 150 Intrinsic temperature (K) 100 Initial inner boundary pressure (Pa) 2.0 $$\times$$ 107 Upper boundary height (m) 1.0 $$\times$$ 107 Ideal gas constant, R (J kg−1 K−1) 3556.8 Specific heat capacity, cp (J kg−1 K−1) 1.3 $$\times$$ 104 Radius, Rp (m) 9.00 $$\times$$ 107 Rotation rate, Ω (s−1) 2.06 $$\times$$ 10−5 Surface gravity, gp (m s−2) 10.79 Semi-major axis, ap (au) 4.75 $$\times$$ 10−2 Parameter Value Horizontal resolution (grid cells) λ = 144, ϕ = 90 Vertical resolution (levels) 66 Hydrodynamical time-step (s) 30 Radiative time-step (s) 150 Intrinsic temperature (K) 100 Initial inner boundary pressure (Pa) 2.0 $$\times$$ 107 Upper boundary height (m) 1.0 $$\times$$ 107 Ideal gas constant, R (J kg−1 K−1) 3556.8 Specific heat capacity, cp (J kg−1 K−1) 1.3 $$\times$$ 104 Radius, Rp (m) 9.00 $$\times$$ 107 Rotation rate, Ω (s−1) 2.06 $$\times$$ 10−5 Surface gravity, gp (m s−2) 10.79 Semi-major axis, ap (au) 4.75 $$\times$$ 10−2 View Large Table 1. Selected model parameters from our hot-interior HD 209458b atmosphere, covering grid setup, run lengths, and planet constants. See Lines et al. (2018) for more information. Parameter Value Horizontal resolution (grid cells) λ = 144, ϕ = 90 Vertical resolution (levels) 66 Hydrodynamical time-step (s) 30 Radiative time-step (s) 150 Intrinsic temperature (K) 100 Initial inner boundary pressure (Pa) 2.0 $$\times$$ 107 Upper boundary height (m) 1.0 $$\times$$ 107 Ideal gas constant, R (J kg−1 K−1) 3556.8 Specific heat capacity, cp (J kg−1 K−1) 1.3 $$\times$$ 104 Radius, Rp (m) 9.00 $$\times$$ 107 Rotation rate, Ω (s−1) 2.06 $$\times$$ 10−5 Surface gravity, gp (m s−2) 10.79 Semi-major axis, ap (au) 4.75 $$\times$$ 10−2 Parameter Value Horizontal resolution (grid cells) λ = 144, ϕ = 90 Vertical resolution (levels) 66 Hydrodynamical time-step (s) 30 Radiative time-step (s) 150 Intrinsic temperature (K) 100 Initial inner boundary pressure (Pa) 2.0 $$\times$$ 107 Upper boundary height (m) 1.0 $$\times$$ 107 Ideal gas constant, R (J kg−1 K−1) 3556.8 Specific heat capacity, cp (J kg−1 K−1) 1.3 $$\times$$ 104 Radius, Rp (m) 9.00 $$\times$$ 107 Rotation rate, Ω (s−1) 2.06 $$\times$$ 10−5 Surface gravity, gp (m s−2) 10.79 Semi-major axis, ap (au) 4.75 $$\times$$ 10−2 View Large 2.4 Methodology Since our transmission method is performed at ‘run-time’, (i.e. at any time requested during the execution of the um), it is only necessary to run our simulations for a single t = 30 s hydrodynamical time-step in order to retrieve the transmitted flux. From Lines et al. (2018), and described in Section 2.3, we took the existing ‘hot’ HD 209458b cloudy atmosphere, at t = 100 earth days of simulated cloud formation, and continued this simulation under the same conditions for a single hydrodynamical (and radiative) time-step. During this step, a second diagnostic call to the radiative transfer scheme was enabled whereby the transmitted flux is calculated using spectral files that cover λ = 0.2–10,000 $$\mu$$m using 950 bands, a significant improvement over the 32 bands used to obtain the heating rates (see Amundsen et al. 2014 for more information). We simulated, and extracted the transmitted flux from, atmospheres corresponding to 18 scenarios that explore the roles of cloud opacity, composition, and gravitational settling. In the first study, we analysed two clear-sky atmospheres with PT profiles corresponding to an atmosphere prior to and after modification by radiatively active clouds, a cloudy simulation with full opacity from our mixed-composition cloud particles, including both scattering and absorption by cloud particles, one without cloud particle absorption and one without cloud particle scattering. In the second study, we added a further four cases in which we scaled the cloud opacity (by way of the scattering and absorption coefficients) by 0.1, 0.01, 0.001, and 0.0001. In the third study, we investigated the role of composition heterogeneity on the transmission spectrum by forcing mixed-composition cloud particles to adopt a single chemical make-up (as if the cloud had formed by homogenous condensation) using each of the five contributing dust species that make up our original cloud particles: TiO2, SiO, SiO2, MgSiO3, and Mg2SiO4. This process involved setting the volume contribution to 100 $${{\ \rm per\ cent}}$$ for each species, in turn, and thus bypassing the need to calculate average optical values via effective medium theory. In our final study, we explored the role of cloud particle precipitation. Gravitational settling of the cloud may significantly alter the atmospheric observables as it can be an efficient way to remove high-opacity condensate particles and haze from the upper atmosphere. Precipitation time-scales can be long; from Lines et al. (2018) we find that particles settling, for example, from P = 1–2 bar, can occur within t = 50 d providing there is no other advective process at play. However, this gravitational rainout can be (and in our case is) offset by upwards vertical transport from atmospheric circulation in the form of global winds. This reduction in the net cloud particle velocities (10−1 to 10−4 m s−1) results in a required integration time to a semisteady state of tens of years. In some cases, strong dayside updraughts can entirely support or even loft small particulates to high altitudes. The equilibrium state of such a process is therefore not currently possible to obtain with computationally demanding 3D GCMs. Therefore, to simulate the effects of an atmosphere in which the cloud has settled to deeper pressures, we executed our transmission scheme for four additional cloudy profiles whereby the cloud opacity is zeroed for the first (upper) 15, 20, 25, and 30 vertical layers, corresponding to upper cloud boundaries of approximately P = 0.01, 0.1, 1, and 10 mbar. Since pressure, for a given height, varies as a function of horizontal location, the cloud top pressure varies slightly for a single layer.4 3 RESULTS 3.1 Clear skies Our synthetic transmission spectra are displayed in Fig. 3. With the clear-sky (radiatively transparent clouds) simulation, we see H/He Rayleigh scattering up to 0.5$$\mu$$m that is immediately followed by the prominent Na and K absorption lines, and at longer wavelengths by H2O and CO features. The clear transmission (active model clouds) simulation considers an atmosphere that does not contain direct scattering or absorption from cloud particles, but has a PT profile that has adjusted in response to 50 d of radiatively active clouds. By comparison with the ‘transparent’ clear-skies simulation (which considers a PT profile prior to radiatively active clouds), the strongly scattering and hence cooler atmosphere (up to 250 K) results in a modification to the solution of gas-phase chemical equilibrium. This effect reduces the alkali metal signatures and, for λ < 3$$\mu$$m, water features. Most noticeable though is the CH4 feature at 3.3 $$\mu$$m (and to a lesser extent 7.8 $$\mu$$m), which has an enhanced absorption amplitude, a result of the cooler conditions increasing the methane abundance (in relation to CO). Figure 3. View largeDownload slide Synthetic transmission spectra of HD 209458b. (a) Radiative contribution. Magenta: clear-sky atmosphere prior to cloud modification of thermal profile. Blue: clear-sky transmission from a cloudy model atmosphere (PT profile modified by 50 d of radiatively active clouds; see Lines et al. 2018 for details). Black: cloudy atmosphere including both scattering and absorption from cloud particles. Red: cloudy atmosphere without cloud particle scattering. Grey: cloudy atmosphere without cloud particle absorption. (b) Scaled cloud opacity. Blue: As above. Black, Grey, Cyan, Red, and Magenta: cloudy atmosphere with a varying scaling factor of the cloud opacity, ranging from 1.0$$\times$$ to 0.0001$$\times$$. Figure 3. View largeDownload slide Synthetic transmission spectra of HD 209458b. (a) Radiative contribution. Magenta: clear-sky atmosphere prior to cloud modification of thermal profile. Blue: clear-sky transmission from a cloudy model atmosphere (PT profile modified by 50 d of radiatively active clouds; see Lines et al. 2018 for details). Black: cloudy atmosphere including both scattering and absorption from cloud particles. Red: cloudy atmosphere without cloud particle scattering. Grey: cloudy atmosphere without cloud particle absorption. (b) Scaled cloud opacity. Blue: As above. Black, Grey, Cyan, Red, and Magenta: cloudy atmosphere with a varying scaling factor of the cloud opacity, ranging from 1.0$$\times$$ to 0.0001$$\times$$. 3.2 Cloudy skies The high cloud particle number densities introduce a large cloud opacity that spans across both the visual and the infrared leading to a flat spectrum compared to a clear-sky atmosphere. However, when isolating the full cloud opacity model as shown in Fig. 4, the transit radius ratio is revealed to have a wavelength dependence. Notably, the extensive Mie scattering from our 0.3 $$\mu$$m cloud particles leads to a shallower gradient in the visual, reducing the H/He Rayleigh scattering, which is a prominent feature of a clear-sky atmosphere. Beyond 4$$\mu$$m, cloud particle absorption begins to play a stronger role and leads to a cloud feature that is extremely broad (due to both a mixed composition and particle size) but peaking at around 9 $$\mu$$m. The only gas-phase feature that is not completely flattened by the broad cloud opacity is the narrow CH4 signature at 3.3 $$\mu$$m. Figure 4. View largeDownload slide Simulated transmission spectrum from the full cloud opacity model. As per Fig. 3 but with Rp/Rs axis scaling to show the spectrum shape. Figure 4. View largeDownload slide Simulated transmission spectrum from the full cloud opacity model. As per Fig. 3 but with Rp/Rs axis scaling to show the spectrum shape. In the scattering-only simulation, the transmitted flux increases (Rp/Rs decreases) for wavelengths longer than that of the methane feature (3.3 $$\mu$$m). Interestingly, cloud scattering also produces a broad feature between   8 and 12$$\mu$$m, although at these wavelengths the cloud extinction is entirely dominated by absorption. The absorption-only simulation produces almost identical spectra to the full simulation for λ > 4.5$$\mu$$m, indicating the 9 $$\mu$$m peak is attributed to cloud absorption. Decreasing the cloud opacity helps to accentuate the 9 $$\mu$$m cloud feature, as it reduces the opacity outside of this window, although the strength of the features attenuates for the lowest opacity (0.0001 x). The 0.001 x scaling factor leads to a well-defined cloud absorption feature as well as beginning to reveal the water vapour and carbon monoxide features. Since the Mie scattering efficiency is high around our average cloud particle size of 0.3 $$\mu$$m (see Lines et al. 2018 for more information), the opacity remains high in the optical even for the highest opacity scaling. As a result, the alkali metal features are still heavily muted. To address and quantify the bias in our transmission model, which considers only the atmospheric properties from the nightside columns, we perform an additional simulation that is not shown in Fig. 3. A spectrum is obtained for the full cloud opacity (1.0 x cloud) model, but we instead perform the transmission calculation taking into account only the properties from the dayside. This spectrum is then averaged with the nightside-only model to correspond to a solution that accounts for the atmospheric properties across both sides of the terminator. We find an offset (increase) in the transit depth of between 25 and 50 ppm, which is unlikely to be detectable through the instrument noise. Such an increase in the atmospheric opacity is expected, due to higher cloud particle number densities on the dayside, leading to increased optical depths; these cloud properties are illustrated in Fig. 2. Transmission spectra obtained observationally have a floating baseline radius that is unknown and therefore must be deduced by fitting routines. The resulting spectrum is therefore not on an absolute radius (or pressure) scale, making the identification of relative differences in the spectral features a critical aspect in characterization. In our case, the overall shape of the spectrum remains consistent between models using the nightside and the averaged values. Crucially, this allows for the same identification of spectral markers, such as the silicate peak, in addition to resolving overall trends in the data. 3.3 Composition In Fig. 5, we present the transmission spectra for our forced cloud composition. While forcing a purely SiO cloud composition presents a dramatically different transmission profile for 5 $$\mu$$m < λ < 8.5 $$\mu$$m, the remaining cloud species closely follow the default mineral mix. Pure TiO2 introduces a higher opacity in the visual and near-infrared, but does not produce the cloud absorption features (attributed to the Si–O bonding in the silicates) at 9$$\mu$$m. TiO2 regains dominance from 12 $$\mu$$m due to the its high extinction factor at 20 $$\mu$$m. However, in our upper atmosphere TiO2, alongside SiO, contributes very little (or in some cases none) of the cloud particle volume; contributions from TiO2 exist primarily in the form of the nucleation seed, and that from SiO is only non-negligible for the deepest atmosphere (see Lines et al. 2018 for more information on cloud particle composition). At pressures probed by transmission spectroscopy, the compositional mix is approximately 15 $${{\ \rm per\ cent}}$$ SiO2, 30 $${{\ \rm per\ cent}}$$ MgSiO3, and 55 $${{\ \rm per\ cent}}$$ Mg2SiO4. Figure 5. View largeDownload slide Synthetic transmission spectrum of our cloudy HD 209458b. Particle composition is forced from a variable mineral mixture (mixed composition with volume ratios taken from Lines et al. 2018) to single species. The same data, without SiO, is shown in the lower plot. Figure 5. View largeDownload slide Synthetic transmission spectrum of our cloudy HD 209458b. Particle composition is forced from a variable mineral mixture (mixed composition with volume ratios taken from Lines et al. 2018) to single species. The same data, without SiO, is shown in the lower plot. While the opacities from the magnesium silicates peak at similar wavelengths (9–10 $$\mu$$m), SiO2 provides an opacity maximum, for the wavelengths plotted in Fig. 5, at shorter values, which helps to broaden the mineral mix absorption peak towards 8$$\mu$$m. 3.4 Precipitation In Fig. 6, we present the transmission spectra of our cloudy atmosphere with enhanced precipitation, calculated by zeroing the cloudy opacity in the upper n layers. By removing cloud scattering and absorption in the first 15, 20, 25, and 30 vertical layers, we force the cloud top to pressures of approximately P = 0.01, 0.1, 1, and 10 mbar, respectively, simulating the effects of cloud particle rainout over time-scales longer than our 3D GCM can practically capture. The results indicate that the cloud must settle to the millibar pressure level until all spectral features common to HD 209458b (Na, K, and H2O) can be seen. A cloud confined to below P = 1 mbar results in a grey opacity, with a weak sodium signal and water bands. At the shortest wavelengths, the Rayleigh scattering from the background H/He atmosphere becomes important. For the deepest cloud top at P = 15–60 mbar, the spectrum closely traces our clear-sky atmosphere for λ < 0.3$$\mu$$m and λ > 2 $$\mu$$m. Figure 6. View largeDownload slide Transmission spectra exploring the effects of gravitational settling of cloud particles, produced from the set of ‘enhanced precipitation’ simulations. Pressures in the legend indicate the minimum and maximum pressures traced by the cloud top (upper cloud boundary) in each model. Figure 6. View largeDownload slide Transmission spectra exploring the effects of gravitational settling of cloud particles, produced from the set of ‘enhanced precipitation’ simulations. Pressures in the legend indicate the minimum and maximum pressures traced by the cloud top (upper cloud boundary) in each model. 3.5 JWST potential In preparation for the launch of JWST, Batalha et al. (2017) have developed a noise simulator, called pandexo, which generates simulated observations of all observatory-supported time-series spectroscopy modes. In Fig. 7, we present pandexo simulations for a selection of the generated transmission spectra of HD 209458b using both the NIRSpec G395H and MIRI LRS modes. Figure 7. View largeDownload slide JWST detectability with pandexo simulator showing each simulation from Fig. 3 with the same format and colour scheme. Figure 7. View largeDownload slide JWST detectability with pandexo simulator showing each simulation from Fig. 3 with the same format and colour scheme. The simulations were performed for a single occultation with an equal fraction of in, to out of, transit observation time; a noise floor of 50 ppm was set for all observation modes and detector saturation was set at 80 $${{\ \rm per\ cent}}$$ full well. The stellar and planetary parameters necessary for the simulation were retrieved from the tepcat database and the stellar spectrum used was identical to the one used in the GCM. All instrument-related parameters, such as subarrays and readout patterns, were kept at the pandexo defaults. The resolutions of the generated spectra are not strictly as high as the achievable resolution of the NIRSpec G395H or the MIRI LRS. However, binning of the data will be typically necessary to improve the signal to noise and make resolving certain spectral features possible. As such, we have binned the NIRSpec G395H and MIRI LRS data to a resolution of R ∼ 60 and R ∼ 30, respectively. We measure the silicate feature between 4 and 9 $$\mu$$m to be 70 ppm and thus, providing the MIRI instrument noise floor lies well below the feature size, it is in a regime where detection is possible. We perform a χ2 analysis between the pandexo-simulated observations and (i) our simulated full-opacity cloudy model ($$\chi ^{2}_{\textrm{cloudy}}$$) and (ii) a flat-line ‘grey’ spectrum ($$\chi ^{2}_{\textrm{grey}}$$) with variable transit depth between 0.0153 ≤ (Rp/Rs)2 ≤ 0.0155. We find $$\chi ^{2}_{\textrm{cloudy}}$$ = 117 and 228 ≥ $$\chi ^{2}_{\textrm{grey}}$$ ≤ 12030 for 122 degrees of freedom, and rule out a fully grey atmosphere at 5.6 σ. For all cases $$\chi ^{2}_{\textrm{cloudy}}$$ < $$\chi ^{2}_{\textrm{grey}}$$, indicating detection of the silicate feature over that of a fully grey atmosphere is favourable. The CH4 amplitude of 20 ppm in the full cloud model is within the scatter and therefore is unlikely to be detected above the noise. Both the silicate and methane detectability increases, however, with reducing cloud opacity. This means that for an atmosphere with less cloud particles in the transit region (potentially originating from, e.g., lower metallicity and/or enhanced settling) the detection likelihood of cloud particles, and gas absorption, improves. An opacity scaling of 0.01 x is likely required in order to detect the 3.3 $$\mu$$m methane feature (150 ppm). 4 DISCUSSION AND SUMMARY Since our simulations produce vertically extensive cloud condensate decks with large cloud particle number densities (>3 $$\times$$ 104 cm−3) even at the lowest pressures, it is not surprising that the blanket opacity across the visual and infrared mask, almost completely, the atomic and molecular signatures in the gas phase. Despite this, the obtained synthetic transmission spectrum for the full cloud opacity model still contains potentially detectable features. First, there is the flat nature, compared to a clear-sky atmosphere, of the spectrum. This indicates the presence of high-opacity aerosols that can efficiently obscure the spectral signatures of the majority of gas-phase absorbers, unless the cloud opacity is scaled down or the cloud deck upper boundary or ‘cloud top’ is forced to higher (deeper) pressures. Secondly, there remains a tiny signature from CH4 absorption, which is amplified from the cooler atmospheric conditions produced by a highly scattering cloud in our Lines et al. (2018) simulations. Finally, the 9 $$\mu$$m cloud absorption feature, shown to be broadened by mixed-composition cloud particles, is potentially detectable by JWST, providing a reduced cloud opacity. The previously predicted Si–O vibrational absorption from cloud particles (Lee et al. 2014; Wakeford & Sing 2015) leads to strong absorption (shown via the imaginary component of the material refractive indices) at around 10$$\mu$$m for the SiO2, TiO2, MgSiO3, and Mg2SiO4 condensates considered in our work. Further understanding of how this feature changes in response to the cloud composition will likely prove critical in determining cloud properties (e.g. composition, particle/droplet size) of observed atmospheres. We address the bias introduced by an approximation in our transmission model, and find that the offset in the transit radius ratio when considering atmospheric properties about both the night and daysides of the terminator is minimal. The offset, which for our case lies below the JWST instrument noise, is a function of the cloud longitudinal asymmetry level. To address planetary atmospheres that could feature stronger asymmetries in the cloud distribution, future work may need to improve upon our approximation. One aspect of cloud formation and evolution that could exert a strong influence on the cloud vertical structure and observable properties is the gravitational settling of cloud and/or haze particles. While cloud particles can obtain large precipitation velocities (see Lines et al. 2018), this fall speed can be offset by a combination of vertical mean winds that result in a slow net downwards advection of cloud. Cloud particles may also be transported by turbulence, but this process is not included in our simulations since the model neither includes a subgrid turbulence parametrization nor is at a suitable resolution to capture these processes. Future studies will need to consider the implications of turbulence, since this may have a significant effect on the cloud vertical structure. As cloud particles settle to deeper pressures, the total cloud cross-section reduces in the upper atmosphere, leading to a reduced opacity in the transmission region. While the time-scales involved are typically too long to capture with current 3D simulations, it will be necessary in future studies to address this mechanism. The results from our enhanced precipitation tests, which simulate the effects of a more vertically evolved cloud deck, indicate that the ability to detect gaseous absorption signatures through the grey opacity is strongly dependent on the cloud top pressure. The retrieval analysis of Barstow et al. (2017) on the Sing et al. (2016) data set has previously indicated the importance of this connection, stressing the potential wide range of cloud top pressures across their small sample of hot Jupiters. While we can, for the cloud structural and compositional conditions determined in Lines et al. (2018), constrain the cloud top pressure to be P > 15 mbar for HD 209458b, the motivation of this result is clearly to more accurately pinpoint the vertical equilibrium of the cloud (and hence upper boundary of the cloud opacity). It is also worth considering and cautioning that by parametrizing the cloud top, the complex feedback between the cloud radiative transfer and the atmosphere’s thermal, chemical, and dynamical properties is circumvented. Thus, the resulting synthetic observations do not necessarily represent an atmosphere with a PT profile that has converged to the cloud vertical extent. Observations of HD 209458b have revealed, repeatedly, the presence of sodium (Charbonneau et al. 2002; Sing et al. 2008; Snellen et al. 2008; Jensen et al. 2011) as well as water vapour and carbon monoxide (Snellen et al. 2010; Deming et al. 2013). It is interesting therefore to consider that while the literature typically considers HD 209458b to have a cloudless atmosphere due to the prominence of the aforementioned gaseous chemical signatures, our Lines et al. (2018) simulations are remarkably cloudy in terms of the opacity and both the horizontal and the vertical distribution of cloud particles. As a result, our transmission spectrum probes that of an optically thick atmosphere, with many of the radiative interactions occurring within the first few vertical layers of dense silicate particles; the cloud is radiatively dominant in the most upper layer. The result is an inevitably featureless profile, since there is no layer of gas absorbers above the cloud that can imprint on our spectra. Our opacity-scaling tests indicate that a reduction in both the absorption and the scattering coefficients of at least three orders of magnitude is required to see CO and water bands in the model spectrum, although CH4 is visible in the full cloud opacity spectrum. We note that even with a strong reduction in the opacity, we are still unable to unmask the alkali metal spectral signatures. Our inability to emulate the observed spectrum of HD 209458b is an indication that we are missing physical processes or chemical constituents in our model.5 Our current model setup considers only five condensate materials and therefore may underestimate the atmospheric ‘cloudiness’ by mass. The inclusion of a wider variety of important condensing species may lead to increased cloud particle sizes which will modify the cloud particle optical properties; the significance of this consideration is posited by the 1D microphysical study of Powell et al. (2018), who use a mass-binning technique for their cloud particles to reveal an irregular distribution of silicate particles and explore its importance. The current omission of iron itself, as a strong absorber, means we are likely underestimating cloud warming and this could lead to a situation whereby the atmospheric temperature increases, instead of the net cooling mechanism from a silicate-dominant one. Aside from the aforementioned increase in condensate species, particle growth via coagulation could also play a role in producing heavier particles. Coagulation has been shown to be a requirement to drive precipitation in Earth’s atmosphere (Pruppacher & Klett 1978), with condensational growth alone not able to provide particle sizes large enough to initiate rainout. However, Helling et al. (2008b) show that for submicron silicate grains in substellar atmospheres, coagulation can operate on a time-scale orders of magnitude longer than chemical growth and therefore may not be an essential model component. Our chosen initial metallicity may also play a significant role in cloud abundance, with non-solar values either reducing or increasing the total condensate mass and giving rise to a weakened or increased cloud opacity. This has been demonstrated in Helling et al. (2017) for varying C/O ratios, and in Mahapatra, Helling & Miguel (2017) for rocky versus solar element abundances. Whatever the precise mechanism behind condensate growth, larger particles will effectively sediment out of the atmosphere and support the importance of investigating the role of precipitation. We also acknowledge the omission of hydrocarbons formed photochemically in the gas phase (e.g. polycyclic aromatic hydrocarbons, or PAHs), which may play a large role in the atmospheric opacity and hence spectrum. Even if PAHs cannot themselves survive the large UV flux on the dayside, their precursor radicals have been found to be quite abundant in the upper atmospheric layers (Venot et al. 2015). That situation may change as the radical-rich gas is advected by zonal winds from the hot/irradiated dayside to the cold/dark nightside, leading to the efficient formation of PAHs and, subsequently, photochemical hazes. It has been demonstrated, however, that the abundances of PAHs can be very low, despite their abundances increasing in cloud-forming regions due to the reduction of oxygen (Bilger, Rimmer & Helling 2013). These few physically motivated model adjustments alone may be enough to better reproduce the observed data, by way of increasing the detectability of gas-phase atomic and molecular absorption features. The benefit and power of using this physically motivated model is the ability to isolate and identify such specific physical processes and details, which can be difficult for parametrized models which may obscure the underlying physical mechanisms at play.Therefore, although unlikely to represent the current conditions on HD 209458b, our simulations do provide an insight into those atmospheres that contain optically thick cloud, potentially from suspended silicate condensates. For example, our results are consistent with those of WASP-101b, which has a flat spectrum (there is no WFC3 H2O feature) despite the planet possessing similar atmospheric properties to HD 209458b (Wakeford et al. 2017). This is a possible indication that subtle differences in the atmospheric circulation, metallicity, C/O ratio, etc. and interplay with the cloud radiative feedback could lead to large changes in the cloud’s ability to impact on the observations. Additionally, despite the grey cloud opacity for our simulations, we are still able to identify transmission features that indicate cloud coverage and which have the potential for detection with JWST. Finally, we acknowledge the convenient ability to obtain synthetic transmission spectra directly from our 3D simulations, which will enhance our ability to connect with the latest observations. ACKNOWLEDGEMENTS S. Lines and J. Goyal are funded by and thankful to the Leverhulme Trust. N. J. Mayne is part funded by a Leverhulme Trust Research Project Grant. J. Manners and I. A. Boutle acknowledge the support of a Met Office Academic Partnership secondment. B. Drummond acknowledges funding from the European Research Council (ERC) under the European Unions Seventh Framework Programme (FP7/2007-2013) / ERC grant agreement no. 336792. G. K. H. Lee acknowledges support from the Universities of Oxford and Bern through the Bernoulli fellowship program. A. L. Carter is funded by a Science and Technology Facilities Council (STFC) studentship. The calculations for this paper were performed on the University of Exeter supercomputer, a Distributed Research using Advanced Computing (DiRAC) facility jointly funded by STFC, the Large Facilities Capital Fund of the Department for Business, Innovation and Skills (BIS), and the University of Exeter. Material produced using Met Office Software. The research data supporting this publication are openly available from the University of Exeter's institutional repository at http://hdl.handle.net/10871/33850. The authors would like to thank the referee for their insightful comments and suggestions. Footnotes 1 https://code.metoffice.gov.uk/trac/socrates 2 Atmosphere initialized with a high-entropy interior, as per the heated deep atmosphere of Showman & Guillot (2002) and Tremblin et al. (2017). See Lines et al. (2018) for more details. 3 All references to days (d) refer to one earth day. 4 The UM grid uses a vertical grid on geometric height instead of pressure. 5 Caution must always be taken when making comparisons between transmission spectra from theoretical models and observations due to the presence of degeneracies, for example those existing between baseline pressure, planetary radius, and absorber abundances (see Benneke & Seager 2012; Heng & Kitzmann 2017, for more information). REFERENCES Amundsen D. S. , Baraffe I. , Tremblin P. , Manners J. , Hayek W. , Mayne N. J. , Acreman D. M. , 2014 , A&A , 564 , A59 https://doi.org/10.1051/0004-6361/201323169 CrossRef Search ADS Amundsen D. S. , Tremblin P. , Manners J. , Baraffe I. , Mayne N. J. , 2017 , A&A , 598 , A97 CrossRef Search ADS Amundsen D. S. et al. , 2016 , A&A , 595 , A36 https://doi.org/10.1051/0004-6361/201629183 CrossRef Search ADS Armstrong D. J. , de Mooij E. , Barstow J. , Osborn H. P. , Blake J. , Saniee N. F. , 2016 , Nature Astronomy , 1 , 0004 CrossRef Search ADS Barstow J. K. , Aigrain S. , Irwin P. G. J. , Sing D. K. , 2017 , ApJ , 834 , 50 https://doi.org/10.3847/1538-4357/834/1/50 CrossRef Search ADS Batalha N. E. et al. , 2017 , PASP , 129 , 064501 https://doi.org/10.1088/1538-3873/aa65b0 CrossRef Search ADS Benneke B. , Seager S. , 2012 , ApJ , 753 , 100 https://doi.org/10.1088/0004-637X/753/2/100 CrossRef Search ADS Bilger C. , Rimmer P. , Helling C. , 2013 , MNRAS , 435 , 1888 https://doi.org/10.1093/mnras/stt1378 CrossRef Search ADS Birkby J. L. , de Kok R. J. , Brogi M. , Schwarz H. , Snellen I. A. G. , 2017 , AJ , 153 , 138 CrossRef Search ADS Brogi M. , de Kok R. J. , Albrecht S. , Snellen I. A. G. , Birkby J. L. , Schwarz H. , 2016 , ApJ , 817 , 106 https://doi.org/10.3847/0004-637X/832/2/106 CrossRef Search ADS Brown T. M. , 2001 , ApJ , 553 , 1006 https://doi.org/10.1086/320950 CrossRef Search ADS Burrows A. , Rauscher E. , Spiegel D. S. , Menou K. , 2010 , ApJ , 719 , 341 https://doi.org/10.1088/0004-637X/719/1/341 CrossRef Search ADS Carone L. , Keppens R. , Decin L. , 2015 , MNRAS , 453 , 2412 https://doi.org/10.1093/mnras/stv1752 CrossRef Search ADS Carone L. , Keppens R. , Decin L. , 2016 , MNRAS , 461 , 1981 https://doi.org/10.1093/mnras/stw1265 CrossRef Search ADS Charbonneau D. , Brown T. M. , Noyes R. W. , Gilliland R. L. , 2002 , ApJ , 568 , 377 CrossRef Search ADS Deming D. et al. , 2013 , ApJ , 774 , 95 https://doi.org/10.1088/0004-637X/774/2/95 CrossRef Search ADS Demory B.-O. et al. , 2013 , ApJ , 776 , L25 https://doi.org/10.1088/2041-8205/776/2/L25 CrossRef Search ADS Dobbs-Dixon I. , Agol E. , 2013 , MNRAS , 435 , 3159 https://doi.org/10.1093/mnras/stt1509 CrossRef Search ADS Dobbs-Dixon I. , Agol E. , Burrows A. , 2012 , ApJ , 751 , 87 https://doi.org/10.1088/0004-637X/751/2/87 CrossRef Search ADS Drummond B. et al. , 2018 , ApJ , 855 , L31 https://doi.org/10.3847/2041-8213/aab209 CrossRef Search ADS Edwards J. M. , 1996 , J. Atmos. Sci. , 53 , 1921 https://doi.org/10.1175/1520-0469(1996)053 < 1921:ECOIFA>2.0.CO;2 CrossRef Search ADS Edwards J. M. , Slingo A. , 1996 , Q. J. R. Meteorol. Soc. , 122 , 689 https://doi.org/10.1002/qj.49712253107 CrossRef Search ADS Evans T. M. et al. , 2017 , Nature , 548 , 58 CrossRef Search ADS PubMed Fortney J. J. , Shabram M. , Showman A. P. , Lian Y. , Freedman R. S. , Marley M. S. , Lewis N. K. , 2010 , ApJ , 709 , 1396 https://doi.org/10.1088/0004-637X/709/2/1396 CrossRef Search ADS Fortney J. J. , Sudarsky D. , Hubeny I. , Cooper C. S. , Hubbard W. B. , Burrows A. , Lunine J. I. , 2003 , ApJ , 589 , 615 https://doi.org/10.1086/374387 CrossRef Search ADS Goyal J. M. et al. , 2018 , MNRAS , 474 , 5158 https://doi.org/10.1093/mnras/stx3015 CrossRef Search ADS Helling C. , Dehn M. , Woitke P. , Hauschildt P. H. , 2008b , ApJ , 675 , L105 CrossRef Search ADS Helling C. , Thi W.-F. , Woitke P. , Fridlund M. , 2006 , A&A , 451 , L9 https://doi.org/10.1051/0004-6361:20064944 CrossRef Search ADS Helling C. , Tootill D. , Woitke P. , Lee G. , 2017 , A&A , 603 , A123 https://doi.org/10.1051/0004-6361/201629696 CrossRef Search ADS Helling C. , Woitke P. , 2006 , A&A , 455 , 325 https://doi.org/10.1051/0004-6361:20054598 CrossRef Search ADS Helling C. , Woitke P. , Thi W.-F. , 2008a , A&A , 485 , 547 https://doi.org/10.1051/0004-6361:20078220 CrossRef Search ADS Helling C. et al. , 2016 , MNRAS , 460 , 855 https://doi.org/10.1093/mnras/stw662 CrossRef Search ADS Heng K. , Kitzmann D. , 2017 , MNRAS , 470 , 2972 https://doi.org/10.1093/mnras/stx1453 CrossRef Search ADS Heng K. , Menou K. , Phillipps P. J. , 2011 , MNRAS , 413 , 2380 https://doi.org/10.1111/j.1365-2966.2011.18315.x CrossRef Search ADS Heng K. , Showman A. P. , 2015 , Annu. Rev. Earth Planet. Sci. , 43 , 509 https://doi.org/10.1146/annurev-earth-060614-105146 CrossRef Search ADS Hubbard W. B. , Fortney J. J. , Lunine J. I. , Burrows A. , Sudarsky D. , Pinto P. , 2001 , ApJ , 560 , 413 https://doi.org/10.1086/322490 CrossRef Search ADS Iyer A. R. , Swain M. R. , Zellem R. T. , Line M. R. , Roudier G. , Rocha G. , Livingston J. H. , 2016 , ApJ , 823 , 109 https://doi.org/10.3847/0004-637X/823/2/109 CrossRef Search ADS Jensen A. G. , Redfield S. , Endl M. , Cochran W. D. , Koesterke L. , Barman T. S. , 2011 , ApJ , 743 , 203 https://doi.org/10.1088/0004-637X/743/2/203 CrossRef Search ADS Kataria T. , Sing D. K. , Lewis N. K. , Visscher C. , Showman A. P. , Fortney J. J. , Marley M. S. , 2016 , ApJ , 821 , 9 https://doi.org/10.3847/0004-637X/821/1/9 CrossRef Search ADS Kilpatrick B. M. et al., 2018 , preprint (arXiv:1704.07421) Kirk J. , Wheatley P. J. , Louden T. , Doyle A. P. , Skillen I. , McCormac J. , Irwin P. G. J. , Karjalainen R. , 2017 , MNRAS , 468 , 3907 https://doi.org/10.1093/mnras/stx752 CrossRef Search ADS Kitzmann D. , Heng K. , 2018 , MNRAS , 475 , 94 https://doi.org/10.1093/mnras/stx3141 CrossRef Search ADS Knutson H. A. , Charbonneau D. , Burrows A. , O’Donovan F. T. , Mandushev G. , 2009 , ApJ , 691 , 866 https://doi.org/10.1088/0004-637X/691/1/866 CrossRef Search ADS Lecavelier Des Etangs A. , Pont F. , Vidal-Madjar A. , Sing D. , 2008 , A&A , 481 , L83 CrossRef Search ADS Lee G. , Dobbs-Dixon I. , Helling C. , Bognar K. , Woitke P. , 2016 , A&A , 594 , A48 CrossRef Search ADS Lee G. , Helling C. , Dobbs-Dixon I. , Juncher D. , 2015 , A&A , 580 , A12 https://doi.org/10.1051/0004-6361/201525982 CrossRef Search ADS Lee J.-M. , Irwin P. G. J. , Fletcher L. N. , Heng K. , Barstow J. K. , 2014 , ApJ , 789 , 14 https://doi.org/10.1088/0004-637X/789/1/14 CrossRef Search ADS Line M. R. et al. , 2016 , AJ , 152 , 203 https://doi.org/10.3847/0004-6256/152/6/203 CrossRef Search ADS Lines S. et al. , 2018 , A&A , 615 , A97 https://doi.org/10.1051/0004-6361/201732278 CrossRef Search ADS Louden T. , Wheatley P. J. , 2015 , ApJ , 814 , L24 https://doi.org/10.1088/2041-8205/814/2/L24 CrossRef Search ADS Mahapatra G. , Helling C. , Miguel Y. , 2017 , MNRAS , 472 , 447 https://doi.org/10.1093/mnras/stx1666 CrossRef Search ADS Marley M. S. , , Ackerman A. S. , Cuzzi J. N. , Kitzmann D. , 2013 , Clouds and Hazes in Exoplanet Atmospheres . UAPress , p. 367 https://doi.org/10.2458/azu_uapress_9780816530595-ch15 Marley M. S. , Robinson T. D. , 2015 , ARA&A , 53 , 279 https://doi.org/10.1146/annurev-astro-082214-122522 CrossRef Search ADS Mayne N. J. , Baraffe I. , Acreman D. M. , Smith C. , Wood N. , Amundsen D. S. , Thuburn J. , Jackson D. R. , 2014a , Geosci. Model Dev. , 7 , 3059 https://doi.org/10.5194/gmd-7-3059-2014 CrossRef Search ADS Mayne N. J. et al. , 2014b , A&A , 561 , A1 https://doi.org/10.1051/0004-6361/201322174 CrossRef Search ADS Mayne N. J. et al. , 2017 , A&A , 604 , A79 https://doi.org/10.1051/0004-6361/201730465 CrossRef Search ADS Menou K. , Rauscher E. , 2009 , ApJ , 700 , 887 https://doi.org/10.1088/0004-637X/700/1/887 CrossRef Search ADS Miller-Ricci Kempton E. , Rauscher E. , 2012 , ApJ , 751 , 117 https://doi.org/10.1088/0004-637X/751/2/117 CrossRef Search ADS Min M. , Hovenier J. W. , Waters L. B. F. M. , de Koter A. , 2008 , A&A , 489 , 135 https://doi.org/10.1051/0004-6361:200809534 CrossRef Search ADS Nikolov N. et al. , 2015 , MNRAS , 447 , 463 https://doi.org/10.1093/mnras/stu2433 CrossRef Search ADS Oreshenko M. , Heng K. , Demory B.-O. , 2016 , MNRAS , 457 , 3420 https://doi.org/10.1093/mnras/stw133 CrossRef Search ADS Parmentier , P. et al. , 2018 , preprint (arXiv:1805.00096) Parmentier V. , Fortney J. J. , Showman A. P. , Morley C. , Marley M. S. , 2016 , ApJ , 828 , 22 CrossRef Search ADS Parmentier V. , Showman A. P. , Lian Y. , 2013 , A&A , 558 , A91 https://doi.org/10.1051/0004-6361/201321132 CrossRef Search ADS Pont F. , Knutson H. , Gilliland R. L. , Moutou C. , Charbonneau D. , 2008 , MNRAS , 385 , 109 https://doi.org/10.1111/j.1365-2966.2008.12852.x CrossRef Search ADS Powell D. , Zhang X. , Gao P. , Parmentier V. , 2018 , ApJ , 860 , 18 https://doi.org/10.3847/1538-4357/aac215 CrossRef Search ADS Pruppacher H. R. , Klett J. D. , 1978 , Microphysics of Clouds and Precipitation . D. Reidel Pub. Co , Dordrecht; Boston Rauscher E. , Kempton E. M. R. , 2014 , ApJ , 790 , 79 https://doi.org/10.1088/0004-637X/790/1/79 CrossRef Search ADS Rauscher E. , Menou K. , 2013 , ApJ , 764 , 103 https://doi.org/10.1088/0004-637X/764/1/103 CrossRef Search ADS Roman M. , Rauscher E. , 2018 , preprint (arXiv:1807.08890) Seager S. , Sasselov D. D. , 2000 , ApJ , 537 , 916 https://doi.org/10.1086/309088 CrossRef Search ADS Showman A. P. , Fortney J. J. , Lewis N. K. , Shabram M. , 2013 , ApJ , 762 , 24 https://doi.org/10.1088/0004-637X/762/1/24 CrossRef Search ADS Showman A. P. , Fortney J. J. , Lian Y. , Marley M. S. , Freedman R. S. , Knutson H. A. , Charbonneau D. , 2009 , ApJ , 699 , 564 https://doi.org/10.1088/0004-637X/699/1/564 CrossRef Search ADS Showman A. P. , Guillot T. , 2002 , A&A , 385 , 166 https://doi.org/10.1051/0004-6361:20020101 CrossRef Search ADS Showman A. P. , Polvani L. M. , 2011 , ApJ , 738 , 71 https://doi.org/10.1088/0004-637X/738/1/71 CrossRef Search ADS Sing D. K. , Vidal-Madjar A. , Désert J.-M. , Lecavelier des Etangs A. , Ballester G. , 2008 , ApJ , 686 , 658 https://doi.org/10.1086/590075 CrossRef Search ADS Sing D. K. et al. , 2011 , A&A , 527 , A73 https://doi.org/10.1051/0004-6361/201015579 CrossRef Search ADS Sing D. K. et al. , 2016 , Nature , 529 , 59 CrossRef Search ADS PubMed Snellen I. A. G. , Albrecht S. , de Mooij E. J. W. , Le Poole R. S. , 2008 , A&A , 487 , 357 https://doi.org/10.1051/0004-6361:200809762 CrossRef Search ADS Snellen I. A. G. , de Kok R. J. , de Mooij E. J. W. , Albrecht S. , 2010 , Nature , 465 , 1049 https://doi.org/10.1038/nature09111 CrossRef Search ADS PubMed Stevenson K. B. et al. , 2014 , Science , 346 , 838 https://doi.org/10.1126/science.1256758 CrossRef Search ADS PubMed Stevenson K. B. et al. , 2017 , AJ , 153 , 68 CrossRef Search ADS Tremblin P. et al. , 2017 , ApJ , 841 , 30 CrossRef Search ADS Venot O. , Hébrard E. , Agúndez M. , Decin L. , Bounaceur R. , 2015 , A&A , 577 , A33 https://doi.org/10.1051/0004-6361/201425311 CrossRef Search ADS Wakeford H. R. , Sing D. K. , 2015 , A&A , 573 , A122 https://doi.org/10.1051/0004-6361/201424207 CrossRef Search ADS Wakeford H. R. et al. , 2017 , ApJ , 835 , L12 https://doi.org/10.3847/2041-8213/835/1/L12 CrossRef Search ADS Woitke P. , Helling C. , 2003 , A&A , 399 , 297 https://doi.org/10.1051/0004-6361:20021734 CrossRef Search ADS Woitke P. , Helling C. , 2004 , A&A , 414 , 335 https://doi.org/10.1051/0004-6361:20031605 CrossRef Search ADS Y-K. Cho J. , Menou K. , Hansen B. , Seager S. , 2008 , ApJ , 675 , 817 https://doi.org/10.1086/524718 CrossRef Search ADS Zdunkowski W. , Welch R. , Korb G. , 1980 , Beiträge zur Physik der Atmosphäre , 53 , 147 Zeidler S. , Mutschke H. , Posch T. , 2015 , ApJ , 798 , 125 https://doi.org/10.1088/0004-637X/798/2/125 CrossRef Search ADS Zeidler S. , Posch T. , Mutschke H. , 2013 , A&A , 553 , A81 https://doi.org/10.1051/0004-6361/201220459 CrossRef Search ADS Zhang X. , Strobel D. F. , Imanaka H. , 2017 , Nature , 551 , 352 CrossRef Search ADS PubMed APPENDIX A Figure A1. View largeDownload slide Complex refractive index for the five dust species that make up our mixed-composition mineral cloud particles. The real component of refractive index, n, is shown in solid lines and the imaginary component, or extinction coefficient k, as dashed lines. A reference list of sources for the optical constants can be found in Lee et al. (2015). Figure A1. View largeDownload slide Complex refractive index for the five dust species that make up our mixed-composition mineral cloud particles. The real component of refractive index, n, is shown in solid lines and the imaginary component, or extinction coefficient k, as dashed lines. A reference list of sources for the optical constants can be found in Lee et al. (2015). © 2018 The Author(s) Published by Oxford University Press on behalf of the Royal Astronomical Society This article is published and distributed under the terms of the Oxford University Press, Standard Journals Publication Model (https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model) TI - Exonephology: transmission spectra from a 3D simulated cloudy atmosphere of HD 209458b JF - Monthly Notices of the Royal Astronomical Society DO - 10.1093/mnras/sty2275 DA - 2018-11-01 UR - https://www.deepdyve.com/lp/oxford-university-press/exonephology-transmission-spectra-from-a-3d-simulated-cloudy-OY8b7IiE1U SP - 194 EP - 205 VL - 481 IS - 1 DP - DeepDyve ER -