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Andres Rojas, Alejandro Vazquez-Tello, Gerardo Ferbeyre, F. Venanzetti, Lutz Bachmann, Bruno Paquin, Valerio Sbordoni, Robert Cedergren (2000)
Hammerhead-mediated processing of satellite pDo500 family transcripts from Dolichopoda cave crickets.Nucleic acids research, 28 20
J. Milligan, D. Groebe, G. Witherell, O. Uhlenbeck (1987)
Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates.Nucleic acids research, 15 21
J. Penedo, T. Wilson, S. Jayasena, A. Khvorova, D. Lilley (2004)
Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements.RNA, 10 5
J. Han, John Burke (2005)
Model for general acid-base catalysis by the hammerhead ribozyme: pH-activity relationships of G8 and G12 variants at the putative active site.Biochemistry, 44 21
(2001)
Geometric nomenclature and classification of
O. Uhlenbeck (1987)
A small catalytic oligoribonucleotideNature, 328
(2002)
base pairs
T. Stage-Zimmermann, O. Uhlenbeck (1998)
Hammerhead ribozyme kinetics.RNA, 4 8
A. Khvorova, A. Lescoute, E. Westhof, S. Jayasena (2003)
Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activityNature Structural Biology, 10
L. Rocheleau, M. Pelchat (2006)
The Subviral RNA Database: a toolbox for viroids, the hepatitis delta virus and satellite RNAs researchBMC Microbiology, 6
M. Canny, F. Jucker, A. Pardi (2007)
Efficient ligation of the Schistosoma hammerhead ribozyme.Biochemistry, 46 12
K. Hertel, Arthur Pardi, O. Uhlenbeck, M. Koizumi, Eiko Ohtsuka, Seiichi Uesugi, R. Cedergren, Fritz Eckstein, W. Gerlach, R. Hodgson, R. Symons (1992)
Numbering system for the hammerhead.Nucleic acids research, 20 12
M. Canny, F. Jucker, E. Kellogg, A. Khvorova, S. Jayasena, A. Pardi (2004)
Fast cleavage kinetics of a natural hammerhead ribozyme.Journal of the American Chemical Society, 126 35
M. Martick, W. Scott (2006)
Tertiary Contacts Distant from the Active Site Prime a Ribozyme for CatalysisCell, 126
M. Peña, Selma Gago, R. Flores (2003)
Peripheral regions of natural hammerhead ribozymes greatly increase their self‐cleavage activityThe EMBO Journal, 22
N. Leontis, Jesse Stombaugh, E. Westhof (2002)
The non-Watson-Crick base pairs and their associated isostericity matrices.Nucleic acids research, 30 16
D. Lilley (2005)
Structure, folding and mechanisms of ribozymes.Current opinion in structural biology, 15 3
E. Osborne, J. Schaak, V. DeRose (2005)
Characterization of a native hammerhead ribozyme derived from schistosomes.RNA, 11 2
G. Ferbeyre, James Smith, R. Cedergren (1998)
Schistosome Satellite DNA Encodes Active Hammerhead RibozymesMolecular and Cellular Biology, 18
S. Ambrós, R. Flores (1998)
In vitro and in vivo self-cleavage of a viroid RNA with a mutation in the hammerhead catalytic pocket.Nucleic acids research, 26 8
W. Scott (2007)
Morphing the minimal and full-length hammerhead ribozymes: implications for the cleavage mechanism, 388
J. Nelson, Irina Shepotinovskaya, O. Uhlenbeck (2005)
Hammerheads derived from sTRSV show enhanced cleavage and ligation rate constants.Biochemistry, 44 44
L. Epstein, J. Gall (1987)
Self-cleaving transcripts of satellite DNA from the newtCell, 48
R. Przybilski, C. Hammann (2006)
The Hammerhead Ribozyme Structure Brought in LineChemBioChem, 7
N. Leontis, E. Westhof (2001)
Geometric nomenclature and classification of RNA base pairs.RNA, 7 4
S. Ambrós, C. Hernández, J. Desvignes, R. Flores (1998)
Genomic Structure of Three Phenotypically Different Isolates of Peach Latent Mosaic Viroid: Implications of the Existence of Constraints Limiting the Heterogeneity of Viroid QuasispeciesJournal of Virology, 72
D. Ruffner, Gary Stormo, O. Uhlenbeck (1990)
Sequence requirements of the hammerhead RNA self-cleavage reaction.Biochemistry, 29 47
C. Hammann, D. Lilley (2002)
Folding and Activity of the Hammerhead RibozymeChemBioChem, 3
G. Prody, J. Bakos, J. Buzayan, Irving Schneider, G. Bruening (1986)
Autolytic Processing of Dimeric Plant Virus Satellite RNAScience, 231
R. Przybilski, S. Gräf, A. Lescoute, W. Nellen, E. Westhof, G. Steger, C. Hammann (2005)
Functional Hammerhead Ribozymes Naturally Encoded in the Genome of Arabidopsis thalianaw⃞The Plant Cell Online, 17
Abstract The hammerhead ribozyme is a small RNA endonuclease found in sub-viral plant pathogens, in transcripts from certain animal satellite DNAs and encoded at distinct loci of Arabidopsis thaliana . Kinetic analyses of tertiary stabilised ribozymes from peach latent mosaic viroid (PLMVd), Schistosoma mansoni and A. thaliana revealed a ten-fold difference in cleavage rates. Core nucleotide variations affected cleavage reactions least in the A. thaliana ribozyme, and most in the S. mansoni ribozyme. The reverse ligation reaction was catalysed efficiently by the PLMVd and A. thaliana ribozymes. The different behaviour of the individual hammerhead ribozymes is discussed in terms of structure and function.
Biological Chemistry – de Gruyter
Published: Jul 1, 2007
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