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10.1002/prot.22202.abs A new optimization‐based method is presented to predict the hydrophobic residue contacts in α‐helical proteins. The proposed approach uses a high resolution distance dependent force field to calculate the interaction energy between different residues of a protein. The...
10.1002/prot.22213.abs Ultralente insulin has been one of the commercially most important insulin preparations in diabetes treatment over the last 50 years. It is a suspension of insulin microcrystals which dissolve slowly following subcutaneous injection. Because of the small crystal size of...
10.1002/prot.22242.abs The large and diverse family of cytochrome P450 monooxygenases (CYPs) was systematically analyzed to identify selectivity‐ and specificity‐determining residues in the substrate recognition site 5, which is located in close vicinity to the heme center. A positively...
10.1002/prot.22206.abs UDP‐Galactopyranose mutase (UGM) is a flavoenzyme that catalyzes interconversion of UDP‐galactopyranose (UDP‐Galp) and UDP‐galactofuranose (UDP‐Galf); its activity depends on FAD redox state. The enzyme is vital to many pathogens, not native to mammals, and is an...
10.1002/prot.22208.abs We proposed the innovative method of domain identification based on the concept of the fuzzy domains. In this method each residue of the protein can belong to several domains simultaneously with certain weights, which reflect to what extent this residue shares the motion...
10.1002/prot.22209.abs Cellular signal transduction pathways are controlled by specific protein–protein interactions mediated by the binding of short peptides to small modular interaction domains. To gain insights into the specificity of these interactions, the association of...
10.1002/prot.22201.abs The human LINE‐1 endonuclease (L1‐EN) contributes in defining the genomic integration sites of the abundant human L1 and Alu retrotransposons. LINEs have been considered as possible vehicles for gene delivery and understanding the mechanism of L1‐EN could help...
10.1002/prot.22204.abs Molecular dynamics simulation has been carried out for the blue copper protein amicyanin from two different sources, Paracoccus denitrificans and Paraccocus versutus, to investigate the structural and dynamical properties common to the two molecules and to identify...
10.1002/prot.22192.abs Drug resistance significantly impairs the efficacy of AIDS therapy. Therefore, precise prediction of resistant viral mutants is particularly useful for developing effective drugs and designing therapeutic regimen. In this study, we applied a structure‐based computational...
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