Physical Chemistry Chemical Physics

doi: 10.1039/d2cp90060bpmid: N/A

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doi: 10.1039/d2cp90061kpmid: N/A

Reis, Marta Castiñeira; Alajarin, Mateo; Marin-Luna, Marta

doi: 10.1039/d2cp00700bpmid: 35322830

The reaction between two molecules is usually envisioned as following a least-motion path with both molecules travelling minimum distances to meet each other. However, the reaction path of lowest activation energy is not only determined by practicality but mainly by the orbital symmetry of the involved reactants and the efficiency of their mutual interaction. The term non-least-motion was born to design those reactions in which reactants follow, in their route to products, pathways longer than those intuitively expected. In this review we summarize the theoretical and experimental studies that describe and rationalize reactions following non-least-motion paths, starting with the dimerizations of carbenes and followed by additional processes of these and other reactive species (silylenes, carbynes) such as insertions into single bonds and additions to π-bonds. Other examples involving less reactive partners are also included.

Wang, Yiqing; Eigler, Siegfried

doi: 10.1039/d1cp05015jpmid: 35320329

Electrodes for electrochemical reduction of graphene oxide (GO) are coated with thin films using drop-casting and evaporation-assisted self-assembly. The influence of loading, the size of the flakes of GO, and the macroscopic coffee-ring effect occurring during drying are investigated. The effective transfer of protons and electrons in the electrochemical reduction of GO is decisive.

Pohl, Marvin N.; Malerz, Sebastian; Trinter, Florian; Lee, Chin; Kolbeck, Claudia; Wilkinson, Iain; Thürmer, Stephan; Neumark, Daniel M.; Nahon, Laurent; Powis, Ivan; Meijer, Gerard; Winter, Bernd; Hergenhahn, Uwe

doi: 10.1039/d1cp05748kpmid: 35253025

We present an experimental X-ray photoelectron circular dichroism (PECD) study of liquid fenchone at the C 1s edge. A novel setup to enable PECD measurements on a liquid microjet [Malerz et al., Rev. Sci. Instrum., 2022, 93, 015101] was used. For the C 1s line assigned to fenchone's carbonyl carbon, a non-vanishing asymmetry is found in the intensity of photoelectron spectra acquired under a fixed angle in the backward-scattering plane. This experiment paves the way towards an innovative probe of the chirality of organic/biological molecules in aqueous solution.

Black, Alexander W.; Bartlett, Philip N.

doi: 10.1039/d2cp00696kpmid: 35319040

Weakly coordinating solvents, such as dichloromethane, have been shown to be attractive for the electrodeposition of functional p-block compound and alloy semiconductors for electronic device applications. In this work the use of solvent descriptors to define weakly coordinating solvents and to identify new candidates for electrochemical applications is discussed. A set of solvent selection criteria are identified based on Kamlet and Taft's π*, α and β parameters: suitable solvents should be polar (π* ≥ 0.55), aprotic and weakly coordinating (α and β ≤ 0.2.). Five candidate solvents were identified and compared to dichloromethane: trifluorotoluene, o-dichlorobenzene, p-fluorotoluene, chlorobenzene and 1,2-dichloroethane. The solvents were compared using a suite of measurements including electrolyte voltammetric window, conductivity, and differential capacitance, and the electrochemistry of two model redox couples (decamethylferrocene and cobaltocenium hexafluorophosphate). Ion pairing is identified as a determining feature in weakly coordinating solvents and the criteria for selecting a solvent for electrochemistry is considered. o-dichlorobenzene and 1,2-dichloroethane are shown to be the most promising of the five for application to electrodeposition because of their polarity.

Fu, Tingting; Zheng, Qingchuan; Zhang, Hongxing

doi: 10.1039/d2cp00232apmid: 35319551

Cytochrome P450 3A4 (CYP3A4) is the most important P450 enzyme for drug metabolism and drug–drug interaction, due to it being responsible for the biotransformation of approximately 50% of clinically used drugs. Advance knowledge of the molecular and mechanistic basis of CYP3A4 regioselective metabolism is beneficial for understanding the production of metabolites, and may allow personalized metabolic pathways or designing pathway-specific therapeutics. In this work, we focus on investigating the ligand–receptor interactions, substrate conformational transition, and key factors regulating the specificity of metabolic pathways using midazolam (MDZ) as a probe. Here, three types of substrate-binding conformations related to the diversity of MDZ metabolites are identified. The results also suggest that an allosteric site for MDZ is located near the F′-helix, A-anchor, and C-terminal loop of CYP3A4. The presence of an effector in the allosteric site can accelerate the conformational transition of the substrate via modulating a “sandwich” structure, and may affect the proportion of metabolites at high substrate concentration. We hope that the results can improve the understanding of the CYP3A4 structure and function, and provide a new perspective for drug development.

Butt, Sam Armenta; Price, Stephen D.

doi: 10.1039/d1cp05397cpmid: 35322816

The reactivity, energetics and dynamics of bimolecular reactions between S2+ and three neutral species (Ar, H2 and N2) have been studied using a position-sensitive coincidence methodology at centre-of-mass collision energies below 6 eV. This is the first study of bimolecular reactions involving S2+, a species detected in planetary ionospheres, the interstellar medium, and in anthropogenic manufacturing processes. The reactant dication beam employed consists predominantly of S2+ in the ground 3P state, but some excited states are also present. Most of the observed reactions involve the ground state of S2+, but the dissociative electron transfer reactions appear to exclusively involve excited states of this atomic dication. We observe exclusively single electron-transfer between S2+ and Ar, a process which exhibits strong forward scatting typical of the Landau–Zener style dynamics observed for other dicationic electron transfer reactions. Following collisions between S2+ + H2, non-dissociative and dissociative single electron-transfer reactions were detected. The dynamics here show evidence for the formation of a long-lived collision complex, [SH2]2+, in the dissociative single electron-transfer channel. The formation of SH+ was not observed. In contrast, the collisions of S2+ + N2 result in the formation of SN+ + N+ in addition to the products of single electron-transfer reactions.

Rosen, Andrew S.; Notestein, Justin M.; Snurr, Randall Q.

doi: 10.1039/d2cp00963cpmid: 35332353

In this work, we computationally explore the formation and subsequent reactivity of various iron-oxo species in the iron–triazolate framework Fe2(μ-OH)2(bbta) (H2bbta = 1H,5H-benzo(1,2-d:4,5-d′)bistriazole) for the catalytic activation of strong C–H bonds. With the direct conversion of methane to methanol as the probe reaction of interest, we use density functional theory (DFT) calculations to evaluate multiple mechanistic pathways in the presence of either N2O or H2O2 oxidants. These calculations reveal that a wide range of transition metal-oxo sites – both terminal and bridging – are plausible in this family of metal–organic frameworks, making it a unique platform for comparing the electronic structure and reactivity of different proposed active site motifs. Based on the DFT calculations, we predict that Fe2(μ-OH)2(bbta) would exhibit a relatively low barrier for N2O activation and energetically favorable formation of an [Fe(O)]2+ species that is capable of oxidizing C–H bonds. In contrast, the use of H2O2 as the oxidant is predicted to yield an assortment of bridging iron-oxo sites that are less reactive. We also find that abstracting oxo ligands can exhibit a complex mixture of both positive and negative spin density, which may have broader implications for relating the degree of radical character to catalytic activity. In general, we consider the coordinatively unsaturated iron sites to be promising for oxidation catalysis, and we provide several recommendations on how to further tune the catalytic properties of this family of metal–triazolate frameworks.

Kroonblawd, Matthew P.; Goldman, Nir; Maiti, Amitesh; Lewicki, James P.

doi: 10.1039/d1cp05647fpmid: 35332907

Chemical reaction schemes are key conceptual tools for interpreting the results of experiments and simulations, but often carry implicit assumptions that remain largely unverified for complicated systems. Established schemes for chemical damage through crosslinking in irradiated silicone polymers comprised of polydimethylsiloxane (PDMS) date to the 1950's and correlate small-molecule off-gassing with specific crosslink features. In this regard, we use a somewhat reductionist model to develop a general conditional probability and correlation analysis approach that tests these types of causal connections between proposed experimental observables to reexamine this chemistry through quantum-based molecular dynamics (QMD) simulations. Analysis of the QMD simulations suggests that the established reaction schemes are qualitatively reasonable, but lack strong causal connections under a broad set of conditions that would enable making direct quantitative connections between off-gassing and crosslinking. Further assessment of the QMD data uncovers a strong (but nonideal) quantitative connection between exceptionally hard-to-measure chain scission events and the formation of silanol (Si–OH) groups. Our analysis indicates that conventional notions of radiation damage to PDMS should be further qualified and not necessarily used ad hoc. In addition, our efforts enable independent quantum-based tests that can inform confidence in assumed connections between experimental observables without the burden of fully elucidating entire reaction networks.