Magnetic Resonance in Chemistry

Montalvo‐González, Rubén; Ariza‐Castolo, Armando

doi: 10.1002/mrc.2504pmid: 19722187

The thermodynamic products (ε‐lactams) of the degradation of ten different spirocyclic oxaziridines were analyzed by 1H and 13C NMR spectroscopy. The preferred conformations were determined by examining the homonuclear spin–spin coupling constant and the chemical shift effects of the N‐substituent and the alkyl group of the aliphatic ring on 1H and 13C NMR spectra. Copyright © 2009 John Wiley & Sons, Ltd.

Blechta, Vratislav; Schraml, Jan

doi: 10.1002/mrc.2505pmid: 19711302

A modification of double quantum–zero quantum (DQ—ZQ) experiment termed single‐quantum–single‐quantum (SQ—SQ) experiment is proposed for the determination of relative signs and magnitudes of coupling constants. The modification replaces the multiple‐quantum evolution period by two synchronously incremented single‐quantum periods. Similarly to DQ—ZQ experiment, the sequence requires only two coupling constants that share one nucleus, the one to be measured and a reference one. This allows application to a larger variety of molecular fragments than traditional 2D sequences producing E.COSY or TROSY pattern. The SQ—SQ experiment eliminates the effects of some other couplings during t1, thereby simplifying the 2D pattern and increasing the signal intensity in comparison with DQ—ZQ experiment. The presented sequence is particularly designed for the determination of silicon–carbon coupling constants across several bonds at natural abundance using silicon–hydrogen couplings as the sign reference. The signs of silicon–carbon couplings across two and three bonds in dimethyl(phenoxy)silane which cannot be detected by traditional methods and which have not yet been determined are established by the SQ—SQ method here: 2J(Si,C) = +2.2 Hz and 3J(Si,C) = −1.7 Hz. Copyright © 2009 John Wiley & Sons, Ltd.

Xie, X.; Yuan, Y.; Krüger, R.; Bröring, M.

doi: 10.1002/mrc.2506pmid: 19728328

The conformation of (bis‐(N,N′‐difluoroboryl))‐3,3′‐diethyl‐4,4′,8,8′,9,9′,10,10′‐octamethyl‐2,2′‐bidipyrrin (1) in solution was studied by analyzing the 13C19F and 19F19F through‐space spin–spin couplings. The 1H and 13C NMR spectra were assigned on the basis of nuclear Overhauser effect spectroscopy (NOESY), heteronuclear single‐quantum correlation (HSQC), and heteronuclear multiple‐bond correlation (HMBC) experiments. The 19F spectrum of 1 was compared with that of 2‐ethyl‐1,3,5,6,7‐pentamethyl‐4,4‐difluoro‐4‐bor‐3a,4a‐diaza‐s‐indacen (2). The 19F19F through‐space spinspin coupling in 1 was thus assigned and the coupling constant was obtained by simulating the coupling patterns. The obtained conformation of 1 was compared with those of the known complexes (bis‐(N,N′‐difluoroboryl))‐3,3′,8,8′,9,9′‐hexaethyl‐4,4′,10,10′‐tetramethyl‐6,6′‐(4‐methylphenyl)‐2,2′‐bidipyrrin (3)and (bis‐(N,N′‐difluoroboryl))‐9,9′‐diethyl‐4,4′,8,8′,10,10′‐hexamethyl‐3,3′‐bis(methoxycarbonylethyl)‐2,2′‐bidipyrrin (4). The conformational dynamics of 1, 3, and 4 was surveyed by observing the temperature dependence of the through‐space coupling constants between 253 and 333 K. The 13C19F and 19F19F through‐space spin–spin couplings thus confirm similar conformations of different BisBODIPYs in solution in contrast to earlier findings in the solid state. Copyright © 2009 John Wiley & Sons, Ltd.

Potmischil, Francisc; Marinescu, Maria; Nicolescu, Alina; Deleanu, Cǎlin

doi: 10.1002/mrc.2507pmid: 19757403

The 1H and 13C NMR chemical shifts of 1,2,3,4,5,6,7,8‐octahydroacridine, 12 of its 9‐substituted derivatives, and of the corresponding N‐oxides were determined, assigned, and discussed in terms of 9‐substituent effects and effects of N‐oxidation. A good linear correlation was found between the 13C chemical shifts of the aromatic carbons in octahydroacridines and those of respective carbons in the corresponding N‐oxides. Copyright © 2009 John Wiley & Sons, Ltd.

Cesare Marincola, Flaminia; Virno, Ada; Randazzo, Antonio; Mocci, Francesca; Saba, Giuseppe; Lai, Adolfo

doi: 10.1002/mrc.2509pmid: 19757406

A comparative study of the competitive cation exchange between the alkali metal ions K+, Rb+, and Cs+ and the Na+ ions bound to the dimeric quadruplex (d(G4T4G4))2 was performed in aqueous solution by a combined use of the 23Na and 1H NMR spectroscopy. The titration data confirm the different binding affinities of these ions for the G‐quadruplex and, in particular, major differences in the behavior of Cs+ as compared to the other ions were found. Accordingly, Cs+ competes with Na+ only for the binding sites at the quadruplex surface (primarily phosphate groups), while K+ and Rb+ are also able to replace sodium ions located inside the quadruplex. Furthermore, the 1H NMR results relative to the CsCl titration evidence a close approach of Cs+ ions to the phosphate groups in the narrow groove of (d(G4T4G4))2. Based on a three‐site exchange model, the 23Na NMR relaxation data lead to an estimate of the relative binding affinity of Cs+ versus Na+ for the quadruplex surface of 0.5 at 298 K. Comparing this value to those reported in the literature for the surface of the G‐quadruplex formed by 5′‐guanosinemonophosphate and for the surface of double‐helical DNA suggests that topology factors may have an important influence on the cation affinity for the phosphate groups on DNA. Copyright © 2009 John Wiley & Sons, Ltd.

Nguyen, Tuyen Kim Pham; Nguyen, Kim Phi Phung; Kamounah, Fadhil S.; Zhang, Wei; Hansen, Poul Erik

doi: 10.1002/mrc.2510pmid: 19728327

Alkylated hydroxyflavothiones, namely flavothione, 5‐hydroxyflavothione, 5,7‐dihydroxyflavothione (chrysinthione), 7‐dodecyloxy‐5‐hydroxyflavothione, 7‐butyloxy‐5‐hydroxyflavothione, 2′,3,4′,7‐tetramethoxy‐5‐hydroxyflavothione, 3,3′,4′,7‐tetramethoxy‐5‐hydroxyflavothione, 7‐butyloxy‐4′,5‐dihydroxyflavothione and 7‐butyloxy‐4′,5‐hydroxyflavanonethione have been synthesized from the corresponding hydroxyflavones in two steps, alkylation of the non‐hydrogen‐bonded hydroxyl groups by bromoalkanes or dimethyl sulfate followed by conversion of the carbonyl group to a thione using Lawesson's Reagent under microwave irradiation and solvent‐free conditions. Part of the alkylated flavanone, 7‐butyloxy‐4′,5‐dihydroxyflavanone, was oxidized during the treatment with Lawesson's reagent to yield a second product 7‐butyloxy‐4′,5‐dihydroxyflavothione in addition to the target product butyloxy‐4′,5‐hydroxyflavanonethione. Deuterium isotope effects on 13C chemical shifts have been measured in hydroxyflavones, isoflavones, flavanones and the thio analogs. Formal four‐bond deuterium isotope effects on 13C chemical shifts, nΔCS(OD) are very sensitive to variations in structures and substitution patterns. Density functional theory (DFT) calculations are carried out to obtain geometries. Correlations relating distances around the hydrogen bond system to the deuterium isotope effects on 13C chemical shifts are discussed. 13C chemical shifts are calculated by DFT methods. Effects of thiocarbonyl anisotropies are suggested. Copyright © 2009 John Wiley & Sons, Ltd.

Spanton, Stephen G.; Whittern, David

doi: 10.1002/mrc.2512pmid: 19725074

We have developed an NMR chemical shift prediction system that enables high throughput automatic grading of NMR spectra. In support of high throughput synthetic efforts for our drug discovery program, a rapid and accurate analysis for identity was needed. The system was designed and implemented to take advantage of the NMR assignments that had been tabulated on internally generated research compounds. The system has been operational for four years and has been used in conjunction with an internally written grading program to successfully analyze several hundred thousand samples based only on their 1D 1H spectrum. A focused test of the system's accuracy on 1006 molecules demonstrated the ability to estimate the proton chemical shift with an average error of +/−0.16 ppm. This level of chemical shift accuracy allows for reliable structure confirmation by automated analysis using only proton NMR. Copyright © 2009 John Wiley & Sons, Ltd.

Mason, Harris E.; Hirner, Joshua J.; Xu, Wenqian; Parise, John B.; Phillips, Brian L.

doi: 10.1002/mrc.2514pmid: 19821466

Pb‐containing hydroxylapatite phases synthesized under aqueous conditions were investigated by X‐ray diffraction and solid‐state nuclear magnetic resonance (NMR) techniques to determine the Pb, Ca distribution. 31P and 1H magic‐angle spinning (MAS) NMR results indicate slight shifts of the isotropic chemical shift with increased Ca content and complex lineshapes at compositions with near equal amounts of Ca and Pb. 31P{207Pb} and 1H{207Pb} rotational‐echo double resonance (REDOR) results for intermediate compositions show that resolved spectral features cannot be assigned simply in terms of local Ca, Pb configurations or coexisting phases. 207Pb MAS NMR spectra are easily obtained for these materials and contain well‐resolved resonances for crystallographically unique A1 and A2 Pb sites. Splitting of the A1 and A2 207Pb resonances for pure hydroxyl‐pyromorphite (Pb10(PO4)6(OH)2) compared to natural pyromorphite (Pb5(PO4)3Cl) suggests symmetry reduced from hexagonal. We find that 207Pb{1H} CP/MAS NMR is impractical in Pb‐rich hydroxylapatites due to fast 207Pb relaxation. Copyright © 2009 John Wiley & Sons, Ltd.

Lu, Jianyun; Dawson, Marcia I.; Hu, Qiong Ying; Xia, Zebin; Dambacher, Jesse D.; Ye, Mao; Zhang, Xiao‐Kun; Li, Ellen

doi: 10.1002/mrc.2515pmid: 19757405

The effect of retinoid X receptor (RXR) antagonists on the conformational exchange of the RXR ligand‐binding domain (LBD) remains poorly characterized. To address this question, we used nuclear magnetic resonance spectroscopy to compare the chemical shift perturbations induced by RXR antagonists and agonists on the RXRα LBD when partnered with itself as a homodimer and as the heterodimeric partner with the peroxisome proliferator‐activated receptor γ (PPARγ) LBD. Chemical shift mapping on the crystal structure showed that agonist binding abolished a line‐broadening effect caused by a conformational exchange on backbone amide signals for residues in helix H3 and other regions of either the homo‐ or hetero‐dimer, whereas binding of antagonists with similar binding affinities failed to do so. A lineshape analysis of a glucocorticoid receptor‐interacting protein 1 NR box 2 coactivator peptide showed that the antagonists enhanced peptide binding to the RXRα LBD homodimer, but to a lesser extent than that enhanced by the agonists. This was further supported by a lineshape analysis of the RXR C‐terminal residue, threonine 462 (T462) in the homodimer but not in the heterodimer. Contrary to the agonists, the antagonists failed to abolish a line‐broadening effect caused by a conformational exchange on the T462 signal corresponding to the RXRα LBD–antagonist–peptide ternary complex. These results suggest that the antagonists lack the ability of the agonists to shift the equilibrium of multiple RXRα LBD conformations in favor of a compact state, and that a PPARγ LBD‐agonist complex can prevent the antagonist from enhancing the RXRα LBD‐coactivator binding interaction. Copyright © 2009 John Wiley & Sons, Ltd.

McLachlan, A. S.; Richards, J. J.; Bilia, A. R.; Morris, G. A.

doi: 10.1002/mrc.2518pmid: 19757483

An improved constant time gradient HSQC–iDOSY pulse sequence is presented, and the corresponding form of the Stejskal–Tanner equation is derived. The pulse sequence is particularly well suited to the problem of analysing mixtures of chemically cognate species, where the high spectral resolution afforded by 1H13C correlation methods is needed for DOSY experiments to give good diffusion resolution. Its use is illustrated for a mixture of rutin and its aglycone quercetin. Copyright © 2009 John Wiley & Sons, Ltd.