doi: 10.1016/0014-5793(92)81333-Hpmid: 1397274
In linear polypeptides, inversion of amino acid chirality (all‐l to all‐d) achieves a mirroring of side chain positions and interactions in conformational space. A similar mirroring of side chain positions is independently achieved by a reversal of the direction of the peptide backbone (retro modification). Thus, while an all‐d chain could be expected to adopt a perfect ‘mirror image’ of the three‐dimensional structure of its parent all‐l protein, the retro‐all‐l chain could be expected to adopt a topological equivalent of such a mirror image, through the symmetry transformations of side chain interactions. These notions, supported by sequence analyses, modelling studies, and evidence relating to the activity of ‘retro‐inverso’ peptides, are extended towards the proposal, that the backbone reversed chain of a large globular protein might recognize the chiral opposite of the parent protein's substrate(s).