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Did you mean: protein fold recognition by sequence reading tools and assessment

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    More Like This enGxHrgFwn Preview Only

    Protein fold recognition by sequence threading: tools and assessment techniques.

    Miller, R. T.; Jones, D. T.; Thornton, J. M.
    FASEB journal : official publication of the Federation of American Societies for Experimental Biology MEDLINE Abstracts – Jan 1, 1996
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    Improving Fold Recognition Without Folds

    Przybylski, Dariusz; Rost, Burkhard
    Follow Journal of Molecular Biology , Volume 341 (1) Elsevier – Jul 30, 2004

    The most reliable way to align two proteins of unknown structure is through sequence–profile and profile–profile alignment methods. If the structure for one of the two is known, fold recognition ...

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    Multiple Sequence Information for Threading Algorithms

    Defay, Tom R.; Cohen, Fred E.
    Follow Journal of Molecular Biology , Volume 262 (2) Elsevier – Sep 20, 1996

    *Corresponding author Keywords: protein structure prediction; threading; fold recognition; relative solvent accessibility; multiple sequence alignments Introduction A solution to the protein folding problem ...

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    More Like This wPNlNCI0qh Rentable

    Improvement of 3D protein models using multiple templates guided by single-template model quality assessment

    Buenavista, Maria T.; Roche, Daniel B.; McGuffin, Liam J.
    Follow Bioinformatics , Volume 28 (14) Oxford University Press – Jul 15, 2012

    highly accurate models; ...

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    DALIX: Optimal DALI Protein Structure Alignment

    Wohlers, Inken; Andonov, Rumen; Klau, Gunnar W.
    Follow Computational Biology and Bioinformatics, IEEE/ACM Transactions on , Volume 10 (1) Institute of Electrical and Electronics Engineers – May 20, 2013

    bioinformatics. Detecting and evaluating structural similarities is a standard task that lies at the basis of many applications like, for example, homology detection, fold recognition, protein classification ...

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    Using scores derived from statistical coupling analysis to distinguish correct and incorrect folds in de‐novo protein structure prediction

    Bartlett, Gail J.; Taylor, William R.
    Follow Proteins: Structure Function and Bioinformatics , Volume 71 (2) Wiley – May 1, 2008

    and incorrectly folded proteins, and used this approach to improve the fold recognition capacity of a threading approach to protein structure prediction. Other studies have found less clear‐cut results, sometimes ...

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    Effective use of sequence correlation and conservation in fold recognition 1 1 Edited by J. M. Thornton

    Olmea, Osvaldo; Rost, Burkhard; Valencia, Alfonso
    Follow Journal of Molecular Biology , Volume 293 (5) Elsevier – Nov 12, 1999

    . The results showed that the fold recognition capacity of a given threading approach could be improved almost fourfold by selecting the alignments that score best under the three different sequence-based ...

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    More Like This 0MQd9FUjD5 Rentable

    Deciphering a novel thioredoxin‐like fold family

    Kinch, Lisa N.; Baker, David; Grishin, Nick V.
    Follow Proteins: Structure Function and Bioinformatics , Volume 52 (3) Wiley – Aug 15, 2003

    ” sequence or sequence group that links to both protein families. 3 , 4 Alternatively, structure‐based searching or fold‐recognition methods that consider evolutionary relatedness 5–7 can further extend ...

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    More Like This 3lfQVqWW4T Rentable

    STRIKE: evaluation of protein MSAs using a single 3D structure

    Kemena, Carsten; Taly, Jean-Francois; Kleinjung, Jens; Notredame, Cedric
    Follow Bioinformatics , Volume 27 (24) Oxford University Press – Dec 15, 2011

    recognition methods (also called threading) (Bowie et al., 1991; Jones et al., 1992; Marin et al., 2002; Wu and Zhang, 2008), where the compatibility between a query sequence and a template structure ...

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    More Like This sS0H6WrhXU Rentable

    A GMDH polynomial neural network-based method to predict approximate three-dimensional structures of polypeptides

    Dorn, Márcio; Braga, André L.S.; Llanos, Carlos H.; Coelho, Leandro S.
    Follow Expert Systems with Applications , Volume 39 (15) Elsevier – Nov 1, 2012

    structures with the lowest potential energy. In threading methods, the main goal is to fit a protein sequence correctly against a structural model. Fold Recognition methods are motivated by the notion ...

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