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(2014)
Plant Cell Rep
JY Kang, HI Choi, MY Im, SY Kim (2002)
Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signalingPlant Cell, 14
Linda Koch (2016)
Resource: A comprehensive catalogue of human RNA-binding protein reagentsNature Reviews Genetics, 17
L. Rizhsky, Hongjian Liang, R. Mittler (2002)
The Combined Effect of Drought Stress and Heat Shock on Gene Expression in Tobacco1Plant Physiology, 130
C. Trapnell, Adam Roberts, L. Goff, G. Pertea, Daehwan Kim, David Kelley, Harold Pimentel, S. Salzberg, J. Rinn, L. Pachter (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and CufflinksNature Protocols, 7
Qi-Yun Zhou, Ai-Guo Tian, Hong-Feng Zou, Zong-ming Xie, Gang Lei, J. Huang, Chunmei Wang, Huiwen Wang, Jin‐Song Zhang, S. Chen (2008)
Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants.Plant biotechnology journal, 6 5
Jixin Dong, Chunhong Chen, Zhixiang Chen (2004)
Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense responsePlant Molecular Biology, 51
Madhunita Bakshi, R. Oelmüller (2014)
WRKY transcription factorsPlant Signaling & Behavior, 9
P. Rushton, H. Macdonald, A. Huttly, C. Lazarus, R. Hooley (1995)
Members of a new family of DNA-binding proteins bind to a conserved cis-element in the promoters of α-Amy2 genesPlant Molecular Biology, 29
Kojiro Hara, M. Yagi, Tomonobu Kusano, Hiroshi Sano (2000)
Rapid systemic accumulation of transcripts encoding a tobacco WRKY transcription factor upon woundingMolecular and General Genetics MGG, 263
Joung-youn Kang, Hyung-in Choi, Min-young Im, S. Kim (2002)
Arabidopsis Basic Leucine Zipper Proteins That Mediate Stress-Responsive Abscisic Acid Signaling Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010362.The Plant Cell Online, 14
Xiaolan Wu, Yoko Shiroto, S. Kishitani, Yukihiro Ito, K. Toriyama (2008)
Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoterPlant Cell Reports, 28
Haiwen Zhang, Zejun Huang, B. Xie, Qi Chen, Xin Tian, Xiulin Zhang, Hongbo Zhang, Xiangyang Lu, Dafang Huang, Rongfeng Huang (2004)
The ethylene-, jasmonate-, abscisic acid- and NaCl-responsive tomato transcription factor JERF1 modulates expression of GCC box-containing genes and salt tolerance in tobaccoPlanta, 220
Tokunori Hobo, Y. Kowyama, T. Hattori (1999)
A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription.Proceedings of the National Academy of Sciences of the United States of America, 96 26
Sheng Ying, Dengfeng Zhang, Jing-ying Fu, Yun-su Shi, Yan-chun Song, Tian-Yu Wang, Yu Li (2012)
Cloning and characterization of a maize bZIP transcription factor, ZmbZIP72, confers drought and salt tolerance in transgenic ArabidopsisPlanta, 235
Shi-Qing Gao, Ming Chen, Zhaoshi Xu, Changping Zhao, Lian-cheng Li, Hui-jun Xu, Yi-miao Tang, Xin Zhao, Youzhi Ma (2011)
The soybean GmbZIP1 transcription factor enhances multiple abiotic stress tolerances in transgenic plantsPlant Molecular Biology, 75
María García, Verónica Giammaria, Carolina Grandellis, M. Téllez-Iñón, R. Ulloa, D. Capiati (2012)
Characterization of StABF1, a stress-responsive bZIP transcription factor from Solanum tuberosum L. that is phosphorylated by StCDPK2 in vitroPlanta, 235
B. Pineles, R. Romero, D. Montenegro, A. Tarca, Yu Han, Y. Kim, S. Drăghici, J. Espinoza, J. Kusanovic, P. Mittal, S. Hassan, C. Kim (2007)
Distinct subsets of microRNAs are expressed differentially in the human placentas of patients with preeclampsia.American journal of obstetrics and gynecology, 196 3
S. Ishiguro, K. Nakamura (1994)
Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 5′ upstream regions of genes coding for sporamin and β-amylase from sweet potatoMolecular and General Genetics MGG, 244
Hongsheng He, Qing Dong, Y. Shao, Haiyang Jiang, Suwen Zhu, B. Cheng, Y. Xiang (2012)
Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpaPlant Cell Reports, 31
Wei Wei, Yuxiu Zhang, Luwan Han, Z. Guan, T. Chai (2008)
A novel WRKY transcriptional factor from Thlaspi caerulescens negatively regulates the osmotic stress tolerance of transgenic tobaccoPlant Cell Reports, 27
Juan Zhang, Youliang Peng, Zejian Guo (2008)
Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plantsCell Research, 18
N. Regier, B. Frey (2010)
Experimental comparison of relative RT-qPCR quantification approaches for gene expression studies in poplarBMC Molecular Biology, 11
Zhen Xie, Zhong-Lin Zhang, Xiaolu Zou, Guangxiao Yang, S. Komatsu, Q. Shen (2006)
Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells.The Plant journal : for cell and molecular biology, 46 2
Chuanxin Sun, Sara Palmqvist, Helena Olsson, M. Borén, S. Ahlandsberg, C. Jansson (2003)
A Novel WRKY Transcription Factor, SUSIBA2, Participates in Sugar Signaling in Barley by Binding to the Sugar-Responsive Elements of the iso1 Promoter Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.0145The Plant Cell Online, 15
K. Shinozaki, K. Yamaguchi-Shinozaki, M. Seki (2003)
Regulatory network of gene expression in the drought and cold stress responses.Current opinion in plant biology, 6 5
A. Giri, H. Wünsche, Sirsha Mitra, J. Zavala, A. Muck, A. Svatoš, I. Baldwin (2006)
Molecular Interactions between the Specialist Herbivore Manduca sexta (Lepidoptera, Sphingidae) and Its Natural Host Nicotiana attenuata. VII. Changes in the Plant's Proteome1[W]Plant Physiology, 142
H. Abé, T. Urao, Takuya Ito, M. Seki, K. Shinozaki, K. Yamaguchi-Shinozaki (2003)
Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) Function as Transcriptional Activators in Abscisic Acid Signaling Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.006130.The Plant Cell Online, 15
Eul-Won Hwang, Kyung-A Kim, Soo-Chul Park, M. Jeong, M. Byun, H. Kwon (2005)
Expression profiles of hot pepper (capsicum annuum) genes under cold stress conditionsJournal of Biosciences, 30
Rengasamy Ramamoorthy, Shuye Jiang, Nadimuthu Kumar, P. Venkatesh, S. Ramachandran (2008)
A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments.Plant & cell physiology, 49 6
S Chakravarthy, RP Tuori, MD D’Ascenzo, PR Fobert, C Despres, GB Martin, Martin (2003)
The tomato transcription factor Pti4 regulates defense-related gene expression via GCC box and non-GCC box cis elementsPlant Cell, 15
J. Antonov, D. Goldstein, Andrea Oberli, A. Baltzer, Marco Pirotta, A. Fleischmann, H. Altermatt, R. Jaggi (2005)
Reliable gene expression measurements from degraded RNA by quantitative real-time PCR depend on short amplicons and a proper normalizationLaboratory Investigation, 85
Can-Fang Niu, Wei Wei, Qi-Yun Zhou, Ai-Guo Tian, Yu-Jun Hao, Wan-Ke Zhang, B. Ma, Qing Lin, Zhengbin Zhang, Jin‐Song Zhang, S. Chen (2012)
Wheat WRKY genes TaWRKY2 and TaWRKY19 regulate abiotic stress tolerance in transgenic Arabidopsis plants.Plant, cell & environment, 35 6
T. Eulgem, P. Rushton, S. Robatzek, I. Somssich (2000)
The WRKY superfamily of plant transcription factors.Trends in plant science, 5 5
Y. Cheong, Hur-Song Chang, Rajeev Gupta, Xun Wang, T. Zhu, S. Luan (2002)
Transcriptional Profiling Reveals Novel Interactions between Wounding, Pathogen, Abiotic Stress, and Hormonal Responses in Arabidopsis1,212Plant Physiology, 129
Dimosthenis Kizis, V. Lumbreras, M. Pagés (2001)
Role of AP2/EREBP transcription factors in gene regulation during abiotic stressFEBS Letters, 498
S. Chakravarthy, R. Tuori, M. D'Ascenzo, P. Fobert, C. Després, G. Martin (2003)
The Tomato Transcription Factor Pti4 Regulates Defense-Related Gene Expression via GCC Box and Non-GCC Box cis Elements Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.017574.The Plant Cell Online, 15
K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, Sudhir Kumar (2011)
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.Molecular biology and evolution, 28 10
G. Tuskan, S. DiFazio, S. Jansson, J. Bohlmann, I. Grigoriev, U. Hellsten, N. Putnam, S. Ralph, S. Rombauts, A. Salamov, J. Schein, L. Sterck, A. Aerts, R. Bhalerao, R. Bhalerao, D. Blaudez, W. Boerjan, A. Brun, A. Brunner, V. Busov, M. Campbell, J. Carlson, M. Chalot, J. Chapman, G.-L. Chen, D. Cooper, P. Coutinho, J. Couturier, S. Covert, Q. Cronk, R. Cunningham, J. Davis, S. Degroeve, A. Déjardin, C. dePamphilis, J. Detter, B. Dirks, I. Dubchak, S. Duplessis, J. Ehlting, B. Ellis, K. Gendler, D. Goodstein, M. Gribskov, J. Grimwood, A. Groover, L. Gunter, B. Hamberger, B. Heinze, Y. Helariutta, B. Henrissat, D. Holligan, R. Holt, W. Huang, N. Islam-Faridi, S. Jones, M. Jones-Rhoades, R. Jørgensen, C. Joshi, J. Kangasjärvi, J. Karlsson, C. Kelleher, R. Kirkpatrick, M. Kirst, A. Kohler, U. Kalluri, F. Larimer, J. Leebens-Mack, J. Leplé, P. LoCascio, Y. Lou, S. Lucas, F. Martin, B. Montanini, C. Napoli, D. Nelson, C. Nelson, K. Nieminen, O. Nilsson, V. Pereda, G. Peter, R. Philippe, G. Pilate, A. Poliakov, J. Razumovskaya, P. Richardson, C. Rinaldi, K. Ritland, P. Rouzé, D. Ryaboy, J. Schmutz, J. Schrader, B. Segerman, H. Shin, A. Siddiqui, F. Sterky, A. Terry, C. Tsai, E. Uberbacher, P. Unneberg, J. Vahala, K. Wall, S. Wessler, G. Yang, T. Yin, C. Douglas, M. Marra, G. Sandberg, Y. Peer, D. Rokhsar (2006)
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)Science, 313
C. Marè, E. Mazzucotelli, C. Crosatti, E. Francia, A. Stanca, L. Cattivelli (2004)
Hv-WRKY38: a new transcription factor involved in cold- and drought-response in barleyPlant Molecular Biology, 55
B. Devaiah, A. Karthikeyan, K. Raghothama (2007)
WRKY75 Transcription Factor Is a Modulator of Phosphate Acquisition and Root Development in Arabidopsis1[C][W][OA]Plant Physiology, 143
Yan-Hua Xu, Jia-Wei Wang, Shui Wang, Jian-Ying Wang, Xiao-Ya Chen (2004)
Characterization of GaWRKY1, a Cotton Transcription Factor That Regulates the Sesquiterpene Synthase Gene (+)-δ-Cadinene Synthase-A1Plant Physiology, 135
H Abe, T Urao, T Ito, M Seki, K Shinozaki, K Yamaguchi-Shinozaki (2003)
Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signalingPlant Cell, 15
K. Dietz, Marc Vogel, Andrea Viehhauser (2010)
AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signallingProtoplasma, 245
L. Pnueli, E. Hallak-Herr, Mira Rozenberg, Mira Cohen, P. Goloubinoff, A. Kaplan, R. Mittler (2002)
Molecular and biochemical mechanisms associated with dormancy and drought tolerance in the desert legume Retama raetam.The Plant journal : for cell and molecular biology, 31 3
D Hui, J Iqbal, K Lehmann, K Gase, HP Saluz, IT Baldwin (2003)
Molecular interactions between the specialist herbivore Manduca sexta (Lepidoptera, Sphingidae) and its natural host Nicotiana attenuata : V. microarray analysis and further characterization of large-scale changes in herbivore-induced mRNAsPlant Physiol, 131
To understand the expression patterns of poplar WRKY genes under salinity stress, 51 of the 119 WRKY genes were selected from di-haploid Populus simonii × P . nigra by quantitative real-time PCR (qRT-PCR). We used qRT-PCR to profile the expression of the top 13 genes under salinity stress across seven time points, and employed RNA-Seq platforms to cross-validate it. Results demonstrated that all the 13 WRKY genes were expressed in root, stem, and leaf tissues, but their expression levels and overall patterns varied notably in these tissues. Regarding overall gene expression in roots, the 13 genes were significantly highly expressed at all six time points after the treatment, reaching the plateau of expression at hour 9. In leaves, the 13 genes were similarly up-regulated from 3 to 12 h in response to NaCl treatment. In stems, however, expression levels of the 13 genes did not show significant changes after the NaCl treatment. Regarding individual gene expression across the time points and the three tissues, the 13 genes can be classified into three clusters: the lowly expressed Cluster 1 containing PthWRKY28, 45 and 105 ; intermediately expressed Clusters 2 including PthWRKY56 , 88 and 116 ; and highly expressed Cluster 3 consisting of PthWRKY41, 44, 51, 61, 62, 75 and 106 . In general, genes in Cluster 2 and 3 displayed a dynamic pattern of “induced amplification—recovering”, suggesting that these WRKY genes and corresponding pathways may play a critical role in mediating salt response and tolerance in a dynamic and tissue-specific manner.
Plant Cell Reports – Springer Journals
Published: Oct 1, 2014
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