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Andolfatto P. Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome, Genome Res , 2007, vol. 12 (pg. 1755- 1762) Google Scholar CrossRef Search ADS ...
to be N -glycosylated are highlighted with a line. Serine and threonine residues predicted to be O -glycosylated are highlighted with a circle. Unique amino acid substitutions are indicated. https://doi.org ...
by two different amino acid substitutions (positions 416 and 420) (3). A further heterogeneity of Gc-globulin is created by a genotype-dependent O -linked glycosylation. Gc1F and Gc1S are modified with a N ...
pressure at an individual site inferred using an empirical Bayes approach; and (3) a fixed effects likelihood (FEL) method that directly estimates nonsynonymous and synonymous substitution rates at each site ...
the chemical property changes of the nearest amino acid substitutions . Data of 400-bp window are shown, for which all comparisons are statistically significant with Mann–Whitney U test except for the comparisons ...
Introduction Correlated occurrence of amino acids at different sites The rate at which individual protein sites accumulate substitutions changes in the course of evolution, which violates ...
use of π̃j = 1/4 for all nucleotides j may be one of the reasons that the +gwF nucleotide substitution models do not perform well. Whereas for the amino acid models the effect of the database values π̃j ...
lactation) using the slice option in SAS and Tukey adjustment. Effects were declared significant at P ≤ 0.05, and tendencies at 0.05 ≤ P ≤ 0.10. RESULTS Dietary Amino Acid Analyses Analyzed N and individual ...
Abstract Amino acid replacement matrices are an essential basis of protein phylogenetics. They are used to compute substitution probabilities along phylogeny branches and thus the likelihood ...
library comprising all combinations of amino acid substitutions returned by IPRO AraC-TAL14 variants . Background GFP expression . Fold-induced GFP expression with 1.5 mM OA ( N = 3, ±SD) (A) . Fold-induced ...
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