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Draft Genome Sequence of the Volcano-Inhabiting Thermoacidophilic Methanotroph Methylacidiphilum fumariolicum Strain SolV

Draft Genome Sequence of the Volcano-Inhabiting Thermoacidophilic Methanotroph Methylacidiphilum... Free Draft Genome Sequence of the Volcano-Inhabiting Thermoacidophilic Methanotroph Methylacidiphilum fumariolicum Strain SolV Ahmad F. Khadem a , Adam S. Wieczorek a , Arjan Pol a , Stéphane Vuilleumier b , Harry R. Harhangi a , Peter F. Dunfield c , Marina G. Kalyuzhnaya d , J. Colin Murrell e , Kees-Jan Francoijs f , Henk G. Stunnenberg f , Lisa Y. Stein g , Alan A. DiSpirito h , Jeremy D. Semrau i , Aurélie Lajus j , Claudine Médigue j , Martin G. Klotz k , Mike S. M. Jetten a and Huub J. M. Op den Camp a a Department of Microbiology, IWWR, Radboud University Nijmegen, Nijmegen, the Netherlands b Université de Strasbourg, UMR 7156 CNRS, Strasbourg, France c Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada d Department of Microbiology, University of Washington, Seattle, Washington, USA e School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, United Kingdom f Department of Molecular Biology, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen, Nijmegen, the Netherlands g Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada h Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, USA i Department of Civil and Environmental Engineering, The University of Michigan, Ann Arbor, Michigan, USA j Laboratoire d'Analyses Bioinformatiques pour la Génomique et le Métabolisme (LABGeM), Genoscope-IG-CEA, Evry, France k Department of Biology, University of North Carolina, Charlotte, North Carolina, USA ABSTRACT The draft genome of Methylacidiphilum fumariolicum SolV, a thermoacidophilic methanotroph of the phylum Verrucomicrobia , is presented. Annotation revealed pathways for one-carbon, nitrogen, and hydrogen catabolism and respiration together with central metabolic pathways. The genome encodes three orthologues of particulate methane monooxygenases. Sequencing of this genome will help in the understanding of methane cycling in volcanic environments. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Journal of Bacteriology American Society For Microbiology

Draft Genome Sequence of the Volcano-Inhabiting Thermoacidophilic Methanotroph Methylacidiphilum fumariolicum Strain SolV

Journal of Bacteriology , Volume 194 (14): 3729 – Jul 15, 2012

Abstract

Free Draft Genome Sequence of the Volcano-Inhabiting Thermoacidophilic Methanotroph Methylacidiphilum fumariolicum Strain SolV Ahmad F. Khadem a , Adam S. Wieczorek a , Arjan Pol a , Stéphane Vuilleumier b , Harry R. Harhangi a , Peter F. Dunfield c , Marina G. Kalyuzhnaya d , J. Colin Murrell e , Kees-Jan Francoijs f , Henk G. Stunnenberg f , Lisa Y. Stein g , Alan A. DiSpirito h , Jeremy D. Semrau i , Aurélie Lajus j , Claudine Médigue j , Martin G. Klotz k , Mike S. M. Jetten a and Huub J. M. Op den Camp a a Department of Microbiology, IWWR, Radboud University Nijmegen, Nijmegen, the Netherlands b Université de Strasbourg, UMR 7156 CNRS, Strasbourg, France c Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada d Department of Microbiology, University of Washington, Seattle, Washington, USA e School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, United Kingdom f Department of Molecular Biology, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen, Nijmegen, the Netherlands g Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada h Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, USA i Department of Civil and Environmental Engineering, The University of Michigan, Ann Arbor, Michigan, USA j Laboratoire d'Analyses Bioinformatiques pour la Génomique et le Métabolisme (LABGeM), Genoscope-IG-CEA, Evry, France k Department of Biology, University of North Carolina, Charlotte, North Carolina, USA ABSTRACT The draft genome of Methylacidiphilum fumariolicum SolV, a thermoacidophilic methanotroph of the phylum Verrucomicrobia , is presented. Annotation revealed pathways for one-carbon, nitrogen, and hydrogen catabolism and respiration together with central metabolic pathways. The genome encodes three orthologues of particulate methane monooxygenases. Sequencing of this genome will help in the understanding of methane cycling in volcanic environments.

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References (18)

Publisher
American Society For Microbiology
Copyright
Copyright © 2012 by the American society for Microbiology.
ISSN
0021-9193
eISSN
1098-5530
DOI
10.1128/JB.00501-12
pmid
22740660
Publisher site
See Article on Publisher Site

Abstract

Free Draft Genome Sequence of the Volcano-Inhabiting Thermoacidophilic Methanotroph Methylacidiphilum fumariolicum Strain SolV Ahmad F. Khadem a , Adam S. Wieczorek a , Arjan Pol a , Stéphane Vuilleumier b , Harry R. Harhangi a , Peter F. Dunfield c , Marina G. Kalyuzhnaya d , J. Colin Murrell e , Kees-Jan Francoijs f , Henk G. Stunnenberg f , Lisa Y. Stein g , Alan A. DiSpirito h , Jeremy D. Semrau i , Aurélie Lajus j , Claudine Médigue j , Martin G. Klotz k , Mike S. M. Jetten a and Huub J. M. Op den Camp a a Department of Microbiology, IWWR, Radboud University Nijmegen, Nijmegen, the Netherlands b Université de Strasbourg, UMR 7156 CNRS, Strasbourg, France c Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada d Department of Microbiology, University of Washington, Seattle, Washington, USA e School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, United Kingdom f Department of Molecular Biology, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen, Nijmegen, the Netherlands g Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada h Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, USA i Department of Civil and Environmental Engineering, The University of Michigan, Ann Arbor, Michigan, USA j Laboratoire d'Analyses Bioinformatiques pour la Génomique et le Métabolisme (LABGeM), Genoscope-IG-CEA, Evry, France k Department of Biology, University of North Carolina, Charlotte, North Carolina, USA ABSTRACT The draft genome of Methylacidiphilum fumariolicum SolV, a thermoacidophilic methanotroph of the phylum Verrucomicrobia , is presented. Annotation revealed pathways for one-carbon, nitrogen, and hydrogen catabolism and respiration together with central metabolic pathways. The genome encodes three orthologues of particulate methane monooxygenases. Sequencing of this genome will help in the understanding of methane cycling in volcanic environments.

Journal

Journal of BacteriologyAmerican Society For Microbiology

Published: Jul 15, 2012

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