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DNA Research Volume 21 Issue 1

Subject Areas: Genetics; ; ;
Publisher: Oxford University Press - Oxford University Press
ISSN: 1340-2838
SJR: 103

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Journal Article

Comprehensive Transcriptome Profiling and Functional Analysis of the Frog (Bombina maxima) Immune System

Zhao, Feng; Yan, Chao; Wang, Xuan; Yang, Yang; Wang, Guangyin; Lee, Wenhui; Xiang, Yang; Zhang, Yun

2014 DNA Research

doi:10.1093/dnares/dst035 pmid:23942912

Abstract Amphibians occupy a key phylogenetic position in vertebrates and evolution of the immune system. But, the resources of its transcriptome or genome are still little now. Bombina maxima possess strong ability to survival in very harsh environment with a more mature immune system. We...
Open Access

Journal Article

Dysbiosis of Salivary Microbiota in Inflammatory Bowel Disease and Its Association With Oral Immunological Biomarkers

Said, Heba S.; Suda, Wataru; Nakagome, Shigeki; Chinen, Hiroshi; Oshima, Kenshiro; Kim, Sangwan; Kimura, Ryosuke; Iraha, Atsushi; Ishida, Hajime; Fujita, Jiro; Mano, Shuhei; Morita, Hidetoshi; Dohi, Taeko; Oota, Hiroki; Hattori, Masahira

2014 DNA Research

doi:10.1093/dnares/dst037 pmid:24013298

Abstract Analysis of microbiota in various biological and environmental samples under a variety of conditions has recently become more practical due to remarkable advances in next-generation sequencing. Changes leading to specific biological states including some of the more complex diseases can...
Open Access

Journal Article

Fungal Alternative Splicing is Associated with Multicellular Complexity and Virulence: A Genome-Wide Multi-Species Study

Grützmann, Konrad; Szafranski, Karol; Pohl, Martin; Voigt, Kerstin; Petzold, Andreas; Schuster, Stefan

2014 DNA Research

doi:10.1093/dnares/dst038 pmid:24122896

Abstract Alternative splicing (AS) is a cellular process that increases a cell's coding capacity from a limited set of genes. Although AS is common in higher plants and animals, its prevalence in other eukaryotes is mostly unknown. In fungi the involvement of AS in gene expression and its effect...
Open Access

Journal Article

Development of 5123 Intron-Length Polymorphic Markers for Large-Scale Genotyping Applications in Foxtail Millet

Muthamilarasan, Mehanathan; Venkata Suresh, B.; Pandey, Garima; Kumari, Kajal; Parida, Swarup Kumar; Prasad, Manoj

2014 DNA Research

doi:10.1093/dnares/dst039 pmid:24086082

Abstract Generating genomic resources in terms of molecular markers is imperative in molecular breeding for crop improvement. Though development and application of microsatellite markers in large-scale was reported in the model crop foxtail millet, no such large-scale study was conducted for...
Open Access

Journal Article

Genome-Wide Microsatellite Characterization and Marker Development in the Sequenced Brassica Crop Species

Shi, Jiaqin; Huang, Shunmou; Zhan, Jiepeng; Yu, Jingyin; Wang, Xinfa; Hua, Wei; Liu, Shengyi; Liu, Guihua; Wang, Hanzhong

2014 DNA Research

doi:10.1093/dnares/dst040 pmid:24130371

Abstract Although much research has been conducted, the pattern of microsatellite distribution has remained ambiguous, and the development/utilization of microsatellite markers has still been limited/inefficient in Brassica, due to the lack of genome sequences. In view of this, we conducted...
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Journal Article

Deep Transcriptome Sequencing of Wild Halophyte Rice, Porteresia coarctata, Provides Novel Insights into the Salinity and Submergence Tolerance Factors

Garg, Rohini; Verma, Mohit; Agrawal, Shashank; Shankar, Rama; Majee, Manoj; Jain, Mukesh

2014 DNA Research

doi:10.1093/dnares/dst042 pmid:24104396

Abstract Porteresia coarctata is a wild relative of rice with capability of high salinity and submergence tolerance. The transcriptome analyses of Porteresia can lead to the identification of candidate genes involved in salinity and submergence tolerance. We sequenced the transcriptome of...
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Journal Article

High-Resolution Linkage and Quantitative Trait Locus Mapping Aided by Genome Survey Sequencing: Building Up An Integrative Genomic Framework for a Bivalve Mollusc

Jiao, Wenqian; Fu, Xiaoteng; Dou, Jinzhuang; Li, Hengde; Su, Hailin; Mao, Junxia; Yu, Qian; Zhang, Lingling; Hu, Xiaoli; Huang, Xiaoting; Wang, Yangfan; Wang, Shi; Bao, Zhenmin

2014 DNA Research

doi:10.1093/dnares/dst043 pmid:24107803

Abstract Genetic linkage maps are indispensable tools in genetic and genomic studies. Recent development of genotyping-by-sequencing (GBS) methods holds great promise for constructing high-resolution linkage maps in organisms lacking extensive genomic resources. In the present study, linkage...

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